Rh7AG108400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014166
Physical Location & Seq
Forward (+)
8559955 .. 8561801
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG108400.1

Sequence Viewer

Length: 777 bp
ATGTCGAGCCCTCCTGCAGAGGAAACCCTAGCAGAACCAGCAGCAGCATCTGAAGAAGAAGAAGAAGAAGAAGCAGAGCAGAAGGTCTCCGACACCGACAACAGCGAGCAATCGCAAGAATGGGAGACCATGGCTCGAGCTTGGCTCTCGTCTTTCCCCGAGGCCAAAGCTGTGTCCATGGACGAGGTCGAGGCCTGGATCGACTCCAACTTCGATTTCATACCTGAAGGCATCAAATCCATGCCTCGCCTTGACGTCTGTCACCGCCTCATCGCTATCCAGAACTGCATGAGGTCCGCCAATCAGGAGAAAGAAGAAGATCAAGGTGATATTCCACATGCTCGATTTCAACGCACTGATCAGTGGAGACCGGTTTATATTTGGTTAGAATCTTTGAATAGAGACGACGTTGTGAAATCCAGAGATATAAGTGAGTGGCTAACTTCGAACCCGAAAATCCAAGAGTACTTGTGCTCTAGGCATTCTCGGTATCATTTGATGCACTACATCAAGAAATGCCATATGAAGATTCTGAAGAGGCGGGAAAGGAAGAAGGGTGTCCAGCAGTCAGACACACCAGCGTCTCTGAAGGTTCACAAAGATGTGGAGATGAAAAGAGAAGCTCCACTAGCCTGCACTAATTTAATCAATGTACCTCAAGATAGTGATCTATTTATGATGAAACGAAAGGAAGCACTTGAGAAATTTCAGATCTTAGTGGAGCTTGAGAAGCTGCTTGCCCCTACGTTTTTAAAGCGTGGAGATGGAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

258

Amino Acids

30.06

Weight (kDa)

5.34

Isoelectric Point (pI)

70.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50410
fragaria_vesca FvH4_5g08300
malus_domestica MD06G1142100.v1.1 MD14G1157400.v1.1
prunus_persica Prupe.5G151300_v2.0.a1 Prupe.5G151300_v2.0.a1
pyrus_communis pycom06g13190
rosa_chinensis RchiOBHm_Chr7g0190221
rosa_laevigata RLG00000004552
rosa_multiflora Rmu_sc0004886.1_g000020
rosa_rugosa Rorug06G0503000 Rorug06G0503000
rosa_samantha Rh7AG108400 Rh7BG111000 Rh7CG113400 Rh7DG111800
rosa_wichuraiana Rw7G009400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AciI CCGC 3 cut(s) 265, 297, 541
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 4 cut(s) 72, 246, 554, 608
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 467, 654
AgeI ACCGGT 1 cut(s) 370
AgsI TTSAA 2 cut(s) 350, 397
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 5 cut(s) 140, 170, 623, 724, 733
AluI AGCT 5 cut(s) 140, 170, 623, 724, 733
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 5 cut(s) 91, 119, 361, 396, 588
AlwI GGATC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 2 cut(s) 135, 158
AoxI GGCC 2 cut(s) 162, 192
ApeKI GCWGC 3 cut(s) 41, 44, 733
ApoI RAATTY 1 cut(s) 704
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AsiGI ACCGGT 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 254, 338
AsuII TTCGAA 1 cut(s) 446
AvaI CYCGRG 2 cut(s) 135, 158
AvaII GGWCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 3 cut(s) 53, 56, 720
BccI CCATC 1 cut(s) 758
BciT130I CCWGG 1 cut(s) 196
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 5 cut(s) 91, 119, 361, 396, 588
BfaI CTAG 3 cut(s) 29, 477, 629
BfmI CTRYAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 711
BisI GCNGC 3 cut(s) 42, 45, 734
BlsI GCNGC 3 cut(s) 43, 46, 735
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 294
BmeT110I CYCGRG 2 cut(s) 135, 158
BmgT120I GGNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 3 cut(s) 56, 240, 489
BoxI GACNNNNGTC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 129, 161
Bpu14I TTCGAA 1 cut(s) 446
BpuEI CTTGAG 3 cut(s) 642, 719, 746
BsaBI GATNNNNATC 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 3 cut(s) 91, 119, 361
BsaJI CCNNGG 3 cut(s) 129, 159, 177
BsaWI WCCGGW 1 cut(s) 370
Bse118I RCCGGY 1 cut(s) 370
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 3 cut(s) 129, 159, 177
BseJI GATNNNNATC 1 cut(s) 666
BseXI GCAGC 3 cut(s) 53, 56, 720
BsgI GTGCAG 1 cut(s) 619
BshFI GGCC 2 cut(s) 164, 194
BshTI ACCGGT 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 476
BsiHKCI CYCGRG 2 cut(s) 135, 158
BsiSI CCGG 1 cut(s) 371
BsmAI GTCTC 5 cut(s) 91, 119, 361, 396, 588
BsmBI CGTCTC 2 cut(s) 396, 588
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 2 cut(s) 164, 194
Bso31I GGTCTC 3 cut(s) 91, 119, 361
BsoBI CYCGRG 2 cut(s) 135, 158
Bsp119I TTCGAA 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 11, 476
Bsp143I GATC 5 cut(s) 198, 319, 358, 667, 711
Bsp19I CCATGG 2 cut(s) 129, 177
BspACI CCGC 3 cut(s) 265, 297, 541
BspANI GGCC 2 cut(s) 164, 194
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 446
BspTNI GGTCTC 3 cut(s) 91, 119, 361
BsrFI RCCGGY 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 129, 159, 177
BssMI GATC 5 cut(s) 198, 319, 358, 667, 711
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 2 cut(s) 129, 177
Bst2UI CCWGG 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 530
BstACI GRCGYC 1 cut(s) 255
BstBI TTCGAA 1 cut(s) 446
BstC8I GCNNGC 3 cut(s) 107, 634, 738
BstDEI CTNAG 1 cut(s) 715
BstDSI CCRYGG 2 cut(s) 129, 177
BstKTI GATC 5 cut(s) 201, 322, 361, 670, 714
BstMAI GTCTC 5 cut(s) 91, 119, 361, 396, 588
BstMBI GATC 5 cut(s) 198, 319, 358, 667, 711
BstMWI GCNNNNNNNGC 3 cut(s) 38, 629, 730
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 341
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 53, 56, 720
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 2 cut(s) 164, 194
BtgI CCRYGG 2 cut(s) 129, 177
BtgZI GCGATG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 354, 368
Cac8I GCNNGC 3 cut(s) 107, 634, 738
CaiI CAGNNNCTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 294
CseI GACGC 1 cut(s) 570
Csp6I GTAC 2 cut(s) 466, 653
CspAI ACCGGT 1 cut(s) 370
CviAII CATG 5 cut(s) 130, 178, 241, 289, 338
CviQI GTAC 2 cut(s) 466, 653
DdeI CTNAG 1 cut(s) 715
DpnI GATC 5 cut(s) 200, 321, 360, 669, 713
DpnII GATC 5 cut(s) 198, 319, 358, 667, 711
DraI TTTAAA 1 cut(s) 753
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 129, 177
Eco147I AGGCCT 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 3 cut(s) 91, 119, 361
Eco47I GGWCC 1 cut(s) 294
Eco57I CTGAAG 4 cut(s) 72, 246, 554, 608
Eco88I CYCGRG 2 cut(s) 135, 158
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 129, 177
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 129, 177
Esp3I CGTCTC 2 cut(s) 396, 588
FaeI CATG 5 cut(s) 133, 181, 244, 292, 341
FatI CATG 5 cut(s) 129, 177, 240, 288, 337
FauI CCCGC 1 cut(s) 534
FauNDI CATATG 1 cut(s) 522
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 3 cut(s) 42, 45, 734
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 42, 45, 734
FspBI CTAG 3 cut(s) 29, 477, 629
GluI GCNGC 3 cut(s) 42, 45, 734
HaeIII GGCC 2 cut(s) 164, 194
HapII CCGG 1 cut(s) 371
HgaI GACGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 5 cut(s) 133, 181, 244, 292, 341
HinfI GANTC 3 cut(s) 203, 389, 529
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 254, 338
Hpy166II GTNNAC 1 cut(s) 595
Hpy188I TCNGA 6 cut(s) 52, 91, 534, 571, 588, 711
Hpy188III TCNNGA 5 cut(s) 280, 305, 420, 511, 659
Hpy8I GTNNAC 1 cut(s) 595
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 4 cut(s) 76, 221, 547, 583
HpyCH4IV ACGT 3 cut(s) 255, 408, 746
HpyCH4V TGCA 4 cut(s) 17, 288, 502, 636
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 629, 730
HpyF3I CTNAG 1 cut(s) 715
HpySE526I ACGT 3 cut(s) 255, 408, 746
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 5 cut(s) 133, 181, 244, 292, 341
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 5 cut(s) 198, 319, 358, 667, 711
LmnI GCTCC 2 cut(s) 628, 721
Lsp1109I GCAGC 3 cut(s) 53, 56, 720
LweI GCATC 3 cut(s) 56, 240, 489
MaeI CTAG 3 cut(s) 29, 477, 629
MaeII ACGT 3 cut(s) 255, 408, 746
MaeIII GTNAC 1 cut(s) 260
MalI GATC 5 cut(s) 200, 321, 360, 669, 713
MboI GATC 5 cut(s) 198, 319, 358, 667, 711
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 2 cut(s) 11, 476
MluCI AATT 2 cut(s) 640, 704
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 114, 231
MseI TTAA 2 cut(s) 644, 752
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 38, 629, 730
NcoI CCATGG 2 cut(s) 129, 177
NdeI CATATG 1 cut(s) 522
NdeII GATC 5 cut(s) 198, 319, 358, 667, 711
NlaIII CATG 5 cut(s) 133, 181, 244, 292, 341
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 1 cut(s) 341
NspV TTCGAA 1 cut(s) 446
PaeR7I CTCGAG 1 cut(s) 135
PceI AGGCCT 1 cut(s) 194
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 389, 529
PflFI GACNNNGTC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 370
PkrI GCNGC 3 cut(s) 43, 46, 735
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PshAI GACNNNNGTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspPI GGNCC 1 cut(s) 294
PspXI VCTCGAGB 1 cut(s) 135
PstI CTGCAG 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 2 cut(s) 467, 654
RsaNI GTAC 2 cut(s) 466, 653
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 2 cut(s) 644, 752
SatI GCNGC 3 cut(s) 42, 45, 734
Sau3AI GATC 5 cut(s) 198, 319, 358, 667, 711
Sau96I GGNCC 1 cut(s) 294
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 11, 476
SfaNI GCATC 3 cut(s) 56, 240, 489
SfcI CTRYAG 1 cut(s) 15
Sfr274I CTCGAG 1 cut(s) 135
SfuI TTCGAA 1 cut(s) 446
SinI GGWCC 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 4 cut(s) 135, 657, 698, 725
SmoI CTYRAG 4 cut(s) 135, 657, 698, 725
Sse9I AATT 2 cut(s) 640, 704
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 3 cut(s) 265, 297, 541
SspMI CTAG 3 cut(s) 29, 477, 629
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 2 cut(s) 129, 177
TaiI ACGT 3 cut(s) 258, 411, 749
TaqI TCGA 7 cut(s) 5, 136, 189, 201, 213, 343, 446
TasI AATT 2 cut(s) 640, 704
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 2 cut(s) 389, 529
Tru1I TTAA 2 cut(s) 644, 752
Tru9I TTAA 2 cut(s) 644, 752
TscAI CASTG 2 cut(s) 361, 368
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 3 cut(s) 41, 44, 733
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 4 cut(s) 208, 539, 626, 695
TspRI CASTG 2 cut(s) 361, 368
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 1 cut(s) 704
XceI RCATGY 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 135
XspI CTAG 3 cut(s) 29, 477, 629
ZraI GACGTC 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.