MD14G1157400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014166
Physical Location & Seq
Forward (+)
25144268 .. 25146744
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1157400.v1.1.491

Sequence Viewer

Length: 924 bp
ATGTCGAACTCCGGAGACCAAACCCTAGCCGCGACACCACCAGCAGCACCGCCAGCGGCAACCGAAGAAGAAGAAGCGGTGGCAGAACAGAGAGTCTCCGACAACGACAACGCCAGCGAGCAGTCCTCCCAGGAATGGGAGACCATGGCCCGAGCTTGGCTCTGCTCGTTCCCCGAGGCCAAAGCTGTCTCCATGGACGAGGTCGAAGCCTGGATCGACTCCAACTTCGATTTCATACCCCAAGGCATCAAGTCCATGCCCCGCGGCGACCTCTGCCACCGCCTCATTGCCATTCAGAATTGCATGCGACTCCCCAACCAGGACCCACATTCTCCAATTCAGGATGGAAAGGAAGAAAACCAGGGTGATATTCCACATGCTCGATTTAAGCGCACCGATCAATGGAGACCGGCTTACATTTGGTTAGAATCGTTGGAGAAAGATGACGTGGTTAAGTCCAAAGATATAGCCGACTGGCTAACTGAGAACCCGGATATCCAAGCAGAGTTGTGCTCTAGGCATTCTAAGTATCATTTGATGCACTATATCAAGAAGTGCCATATGAAGATACTGAAGAGGCGGGAAAAGAAGAAGGTAGTGGATACTTCTTGTTTTAGCCCAATTAGCCTAGAAAATTCCAAGCGTCTGTCTGAAGATGCAGATGCTTCTTCGATATGGACCACATCAGGTATCAAGCAGCCTGACAAACCAGCCTCCCTAAAGGTTCACAAAGACGTGGCAATGAAACAAGAAGCTTTGCTGCCATCTCCACTCTCTGTATGCAATGCATTGATCAATGCACCTAAAGATGGTGACGCATATGTGATGAAACGAAAGGAAGCAATCCAGAAATATGAGATATTAGTGGAGCTGGAGAAGCTGCTTGCCCCCACCTTTTTAAGGCGTGAAGTTGCAAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

308

Amino Acids

34.77

Weight (kDa)

5.71

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50410
fragaria_vesca FvH4_5g08300
malus_domestica MD06G1142100.v1.1 MD14G1157400.v1.1
prunus_persica Prupe.5G151300_v2.0.a1 Prupe.5G151300_v2.0.a1
pyrus_communis pycom06g13190
rosa_chinensis RchiOBHm_Chr7g0190221
rosa_laevigata RLG00000004552
rosa_multiflora Rmu_sc0004886.1_g000020
rosa_rugosa Rorug06G0503000 Rorug06G0503000
rosa_samantha Rh7AG108400 Rh7BG111000 Rh7CG113400 Rh7DG111800
rosa_wichuraiana Rw7G009400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 32, 264
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 8 cut(s) 30, 50, 56, 77, 262, 264, 280, 580
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 2 cut(s) 593, 672
AfiI CCNNNNNNNGG 7 cut(s) 135, 136, 156, 319, 402, 809, 900
AjiI CACGTC 2 cut(s) 448, 736
AjnI CCWGG 4 cut(s) 129, 209, 318, 360
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 5 cut(s) 155, 185, 755, 871, 880
AluI AGCT 5 cut(s) 155, 185, 755, 871, 880
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 5 cut(s) 9, 100, 134, 193, 400
AlwI GGATC 1 cut(s) 221
Ama87I CYCGRG 2 cut(s) 150, 173
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 2 cut(s) 147, 177
ApeKI GCWGC 4 cut(s) 44, 697, 760, 880
ApoI RAATTY 1 cut(s) 634
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 3 cut(s) 148, 322, 678
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 377, 824
AvaI CYCGRG 2 cut(s) 150, 173
AvaII GGWCC 2 cut(s) 322, 678
Bbv12I GWGCWC 1 cut(s) 515
BbvI GCAGC 4 cut(s) 56, 709, 747, 867
BccI CCATC 3 cut(s) 338, 772, 803
BciT130I CCWGG 4 cut(s) 131, 211, 320, 362
BciVI GTATCC 1 cut(s) 595
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 5 cut(s) 9, 100, 134, 193, 400
BfaI CTAG 3 cut(s) 26, 516, 629
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 7 cut(s) 30, 45, 57, 265, 698, 761, 881
BlsI GCNGC 7 cut(s) 31, 46, 58, 266, 699, 762, 882
Bme1390I CCNGG 5 cut(s) 131, 211, 320, 362, 491
Bme18I GGWCC 2 cut(s) 322, 678
BmeT110I CYCGRG 2 cut(s) 150, 173
BmgBI CACGTC 2 cut(s) 448, 736
BmgT120I GGNCC 3 cut(s) 148, 322, 678
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 5 cut(s) 131, 211, 320, 362, 491
BmsI GCATC 4 cut(s) 255, 528, 646, 652
BplI GAGNNNNNCTC 6 cut(s) 110, 142, 144, 176, 497, 529
BpmI CTGGAG 1 cut(s) 893
BpuMI CCSGG 1 cut(s) 491
BsaI GGTCTC 3 cut(s) 9, 134, 400
BsaJI CCNNGG 7 cut(s) 129, 144, 174, 192, 241, 262, 361
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 7 cut(s) 135, 136, 156, 319, 402, 809, 900
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 3 cut(s) 285, 747, 790
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 4 cut(s) 131, 211, 320, 362
BseDI CCNNGG 7 cut(s) 129, 144, 174, 192, 241, 262, 361
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 7 cut(s) 135, 136, 156, 319, 402, 809, 900
BseMI GCAATG 3 cut(s) 285, 747, 790
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 479
BseXI GCAGC 4 cut(s) 56, 709, 747, 867
Bsh1236I CGCG 2 cut(s) 32, 264
BshFI GGCC 2 cut(s) 149, 179
BsiHKAI GWGCWC 1 cut(s) 515
BsiHKCI CYCGRG 2 cut(s) 150, 173
BsiSI CCGG 3 cut(s) 12, 410, 491
BslI CCNNNNNNNGG 7 cut(s) 135, 136, 156, 319, 402, 809, 900
BsmAI GTCTC 5 cut(s) 9, 100, 134, 193, 400
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 2 cut(s) 149, 179
Bso31I GGTCTC 3 cut(s) 9, 134, 400
BsoBI CYCGRG 2 cut(s) 150, 173
Bsp1286I GDGCHC 1 cut(s) 515
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 3 cut(s) 213, 397, 792
Bsp19I CCATGG 2 cut(s) 144, 192
BspACI CCGC 8 cut(s) 30, 50, 56, 77, 262, 264, 280, 580
BspANI GGCC 2 cut(s) 149, 179
BspCNI CTCAG 1 cut(s) 475
BspEI TCCGGA 1 cut(s) 11
BspFNI CGCG 2 cut(s) 32, 264
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 1 cut(s) 221
BspTNI GGTCTC 3 cut(s) 9, 134, 400
BsrDI GCAATG 3 cut(s) 285, 747, 790
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 7 cut(s) 129, 144, 174, 192, 241, 262, 361
BssMI GATC 3 cut(s) 213, 397, 792
BssT1I CCWWGG 3 cut(s) 144, 192, 241
Bst2UI CCWGG 4 cut(s) 131, 211, 320, 362
Bst6I CTCTTC 1 cut(s) 569
BstC8I GCNNGC 5 cut(s) 54, 115, 119, 305, 885
BstDEI CTNAG 2 cut(s) 483, 525
BstDSI CCRYGG 3 cut(s) 144, 192, 262
BstENI CCTNNNNNAGG 1 cut(s) 898
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 2 cut(s) 32, 264
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 3 cut(s) 216, 400, 795
BstMAI GTCTC 5 cut(s) 9, 100, 134, 193, 400
BstMBI GATC 3 cut(s) 213, 397, 792
BstMWI GCNNNNNNNGC 4 cut(s) 53, 273, 624, 877
BstNI CCWGG 4 cut(s) 131, 211, 320, 362
BstNSI RCATGY 2 cut(s) 307, 380
BstSCI CCNGG 5 cut(s) 129, 209, 318, 360, 489
BstUI CGCG 2 cut(s) 32, 264
BstV1I GCAGC 4 cut(s) 56, 709, 747, 867
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 2 cut(s) 149, 179
BtgI CCRYGG 3 cut(s) 144, 192, 262
BtrI CACGTC 2 cut(s) 448, 736
BtsCI GGATG 1 cut(s) 349
Cac8I GCNNGC 5 cut(s) 54, 115, 119, 305, 885
CfoI GCGC 1 cut(s) 393
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 3 cut(s) 148, 322, 678
Cfr42I CCGCGG 1 cut(s) 265
CseI GACGC 2 cut(s) 632, 824
CviAII CATG 5 cut(s) 145, 193, 256, 304, 377
DdeI CTNAG 2 cut(s) 483, 525
DpnI GATC 3 cut(s) 215, 399, 794
DpnII GATC 3 cut(s) 213, 397, 792
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Eco130I CCWWGG 3 cut(s) 144, 192, 241
Eco31I GGTCTC 3 cut(s) 9, 134, 400
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 2 cut(s) 322, 678
Eco57I CTGAAG 2 cut(s) 593, 672
Eco88I CYCGRG 2 cut(s) 150, 173
EcoNI CCTNNNNNAGG 1 cut(s) 898
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 4 cut(s) 129, 209, 318, 360
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 3 cut(s) 144, 192, 241
EcoT22I ATGCAT 1 cut(s) 790
ErhI CCWWGG 3 cut(s) 144, 192, 241
FaeI CATG 5 cut(s) 148, 196, 259, 307, 380
FatI CATG 5 cut(s) 144, 192, 255, 303, 376
FauI CCCGC 2 cut(s) 269, 573
FauNDI CATATG 2 cut(s) 561, 820
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 7 cut(s) 30, 45, 57, 265, 698, 761, 881
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 7 cut(s) 30, 45, 57, 265, 698, 761, 881
FspBI CTAG 3 cut(s) 26, 516, 629
GlaI GCGC 1 cut(s) 392
GluI GCNGC 7 cut(s) 30, 45, 57, 265, 698, 761, 881
GsuI CTGGAG 1 cut(s) 893
HaeIII GGCC 2 cut(s) 149, 179
HapII CCGG 3 cut(s) 12, 410, 491
HgaI GACGC 2 cut(s) 632, 824
HhaI GCGC 1 cut(s) 393
Hin1II CATG 5 cut(s) 148, 196, 259, 307, 380
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 4 cut(s) 93, 218, 309, 428
HpaII CCGG 3 cut(s) 12, 410, 491
HphI GGTGA 2 cut(s) 377, 824
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 3 cut(s) 100, 297, 652
Hpy188III TCNNGA 4 cut(s) 12, 341, 550, 847
Hpy8I GTNNAC 1 cut(s) 727
HpyAV CCTTC 1 cut(s) 586
HpyCH4IV ACGT 2 cut(s) 447, 735
HpyCH4V TGCA 7 cut(s) 303, 541, 659, 783, 788, 800, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 273, 624, 877
HpyF3I CTNAG 2 cut(s) 483, 525
HpySE526I ACGT 2 cut(s) 447, 735
Hsp92II CATG 5 cut(s) 148, 196, 259, 307, 380
HspAI GCGC 1 cut(s) 391
Kpn2I TCCGGA 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 792
KspI CCGCGG 1 cut(s) 265
Kzo9I GATC 3 cut(s) 213, 397, 792
LmnI GCTCC 1 cut(s) 868
Lsp1109I GCAGC 4 cut(s) 56, 709, 747, 867
LweI GCATC 4 cut(s) 255, 528, 646, 652
MaeI CTAG 3 cut(s) 26, 516, 629
MaeII ACGT 2 cut(s) 447, 735
MaeIII GTNAC 1 cut(s) 812
MalI GATC 3 cut(s) 215, 399, 794
MboI GATC 3 cut(s) 213, 397, 792
MboII GAAGA 9 cut(s) 77, 80, 83, 365, 577, 586, 601, 660, 665
MhlI GDGCHC 1 cut(s) 515
MluCI AATT 4 cut(s) 298, 336, 621, 634
MlyI GAGTC 3 cut(s) 102, 212, 303
MmeI TCCRAC 3 cut(s) 123, 246, 414
MnlI CCTC 7 cut(s) 136, 169, 193, 281, 293, 570, 724
Mph1103I ATGCAT 1 cut(s) 790
MroI TCCGGA 1 cut(s) 11
MseI TTAA 3 cut(s) 387, 453, 899
MspA1I CMGCKG 2 cut(s) 56, 264
MspI CCGG 3 cut(s) 12, 410, 491
MspR9I CCNGG 5 cut(s) 131, 211, 320, 362, 491
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 4 cut(s) 131, 211, 320, 362
MvnI CGCG 2 cut(s) 32, 264
MwoI GCNNNNNNNGC 4 cut(s) 53, 273, 624, 877
NciI CCSGG 1 cut(s) 491
NcoI CCATGG 2 cut(s) 144, 192
NdeI CATATG 2 cut(s) 561, 820
NdeII GATC 3 cut(s) 213, 397, 792
NlaIII CATG 5 cut(s) 148, 196, 259, 307, 380
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 812
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 2 cut(s) 307, 380
PaeI GCATGC 1 cut(s) 307
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 7 cut(s) 31, 46, 58, 266, 699, 762, 882
PleI GAGTC 3 cut(s) 101, 212, 303
PpsI GAGTC 3 cut(s) 101, 212, 303
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 4 cut(s) 129, 209, 318, 360
PspGI CCWGG 4 cut(s) 129, 209, 318, 360
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 3 cut(s) 148, 322, 678
PspPPI RGGWCCY 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 200
SacII CCGCGG 1 cut(s) 265
SaqAI TTAA 3 cut(s) 387, 453, 899
SatI GCNGC 7 cut(s) 30, 45, 57, 265, 698, 761, 881
Sau3AI GATC 3 cut(s) 213, 397, 792
Sau96I GGNCC 3 cut(s) 148, 322, 678
SchI GAGTC 3 cut(s) 102, 212, 303
ScrFI CCNGG 5 cut(s) 131, 211, 320, 362, 491
SduI GDGCHC 1 cut(s) 515
SfaNI GCATC 4 cut(s) 255, 528, 646, 652
Sfr303I CCGCGG 1 cut(s) 265
SgrBI CCGCGG 1 cut(s) 265
SinI GGWCC 2 cut(s) 322, 678
SphI GCATGC 1 cut(s) 307
Sse9I AATT 4 cut(s) 298, 336, 621, 634
SsiI CCGC 8 cut(s) 30, 50, 56, 77, 262, 264, 280, 580
SspMI CTAG 3 cut(s) 26, 516, 629
StyD4I CCNGG 5 cut(s) 129, 209, 318, 360, 489
StyI CCWWGG 3 cut(s) 144, 192, 241
TaiI ACGT 2 cut(s) 450, 738
TaqI TCGA 6 cut(s) 5, 204, 216, 228, 382, 671
TasI AATT 4 cut(s) 298, 336, 621, 634
TauI GCSGC 3 cut(s) 32, 59, 267
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 3 cut(s) 387, 453, 899
Tru9I TTAA 3 cut(s) 387, 453, 899
TseFI GTSAC 1 cut(s) 812
TseI GCWGC 4 cut(s) 44, 697, 760, 880
Tsp45I GTSAC 1 cut(s) 812
TspDTI ATGAA 4 cut(s) 223, 578, 758, 842
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 322, 678
XagI CCTNNNNNAGG 1 cut(s) 898
XapI RAATTY 1 cut(s) 634
XceI RCATGY 2 cut(s) 307, 380
XspI CTAG 3 cut(s) 26, 516, 629
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.