FvH4_5g08300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014166
Physical Location & Seq
Reverse (-)
4826762 .. 4828428
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08300.t1

Sequence Viewer

Length: 753 bp
ATGTCGACCCCTCCGGACCAAACCCTAGCAGAACCAGAACCAGCAGCATCTGAAGAAGAAGAAGAGCAGAGCGAGCAATCGGAAGAATGGGAGACCATGGCTCGAGCTTGGGTGTCCTCTTTCCCCGAGGCCAAAGCTGTGTCCATGGAGGAGGTCGAGGCCTGGATCGACTCCAACTTCGATTTCATACCGGACGGCATCAAATCCATGCCTCGCTCCGAAGTCTGCCAACGCCTCATCGCTATCCAGAACTGCATGAGGTCCGCCGCTCAGGAGAAAGAAGAAGAACAAGGTGATGATATCAATATACCACATGCTCGATTCCAACGCACTGATCAGTGGAGACCGGTTTATAGTTGGTTAGAGTCTTTGAATAGTGGCGACGTTGTGAAATCCAAAGATATAAGTGAGTGGCTAACTTCTAACCCGGAAATCCAAGAGTACTTGTGCTCTAGGCATACTCGGTATCATTTGATGCACTACATCAAGAAATGCCATATGAAGATTCTCAAGAGGCGGGAGAGGAAGAAGGGTGTTCAGCAGTCTGACACACCAGCGTCTCTGAAGGTTCACAAAGATGTGGAAATGAAACAAGAAGCTCCACTACCCTCCACTAATCTAATCAATGTACCTCAAGACAGTGATCTATATATGATGAAACGGAAGGAAGCACTTGAAAAATTTCAGATCTTAGTGGAGCTGGAGAAGCTGCTTGCCCCTACGTTCTTAAAGCGTGGAGATGGAATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

251

Amino Acids

29.04

Weight (kDa)

5.18

Isoelectric Point (pI)

72.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50410
fragaria_vesca FvH4_5g08300
malus_domestica MD06G1142100.v1.1 MD14G1157400.v1.1
prunus_persica Prupe.5G151300_v2.0.a1 Prupe.5G151300_v2.0.a1
pyrus_communis pycom06g13190
rosa_chinensis RchiOBHm_Chr7g0190221
rosa_laevigata RLG00000004552
rosa_multiflora Rmu_sc0004886.1_g000020
rosa_rugosa Rorug06G0503000 Rorug06G0503000
rosa_samantha Rh7AG108400 Rh7BG111000 Rh7CG113400 Rh7DG111800
rosa_wichuraiana Rw7G009400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 3 cut(s) 264, 267, 517
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 680
AcuI CTGAAG 2 cut(s) 72, 584
AfaI GTAC 2 cut(s) 443, 630
AgeI ACCGGT 1 cut(s) 346
AgsI TTSAA 2 cut(s) 373, 677
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 5 cut(s) 107, 137, 599, 700, 709
AluI AGCT 5 cut(s) 107, 137, 599, 700, 709
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 3 cut(s) 86, 337, 564
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 2 cut(s) 102, 125
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 2 cut(s) 129, 159
ApeKI GCWGC 2 cut(s) 44, 709
ApoI RAATTY 1 cut(s) 680
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AsiGI ACCGGT 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 681
AspS9I GGNCC 2 cut(s) 16, 261
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 305
AvaI CYCGRG 2 cut(s) 102, 125
AvaII GGWCC 2 cut(s) 16, 261
BarI GAAGNNNNNNTAC 2 cut(s) 588, 620
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 56, 696
BccI CCATC 1 cut(s) 734
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 163
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 3 cut(s) 86, 337, 564
BfaI CTAG 2 cut(s) 26, 453
BglII AGATCT 1 cut(s) 687
BisI GCNGC 3 cut(s) 45, 267, 710
BlsI GCNGC 3 cut(s) 46, 268, 711
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 163, 428
Bme18I GGWCC 2 cut(s) 16, 261
BmeT110I CYCGRG 2 cut(s) 102, 125
BmgT120I GGNCC 2 cut(s) 16, 261
BmrFI CCNGG 2 cut(s) 163, 428
BmsI GCATC 3 cut(s) 56, 207, 465
BpmI CTGGAG 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 494, 618
BpuMI CCSGG 1 cut(s) 428
BsaI GGTCTC 2 cut(s) 86, 337
BsaJI CCNNGG 3 cut(s) 96, 126, 144
BsaWI WCCGGW 3 cut(s) 13, 190, 346
Bse118I RCCGGY 1 cut(s) 346
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 3 cut(s) 96, 126, 144
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 2 cut(s) 56, 696
BshFI GGCC 2 cut(s) 131, 161
BshTI ACCGGT 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 452
BsiHKCI CYCGRG 2 cut(s) 102, 125
BsiSI CCGG 4 cut(s) 14, 191, 347, 428
BsmAI GTCTC 3 cut(s) 86, 337, 564
BsmBI CGTCTC 1 cut(s) 564
BsnI GGCC 2 cut(s) 131, 161
Bso31I GGTCTC 2 cut(s) 86, 337
BsoBI CYCGRG 2 cut(s) 102, 125
Bsp1286I GDGCHC 1 cut(s) 452
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 4 cut(s) 165, 334, 643, 687
Bsp19I CCATGG 2 cut(s) 96, 144
BspACI CCGC 3 cut(s) 264, 267, 517
BspANI GGCC 2 cut(s) 131, 161
BspCNI CTCAG 1 cut(s) 283
BspEI TCCGGA 1 cut(s) 13
BspPI GGATC 1 cut(s) 173
BspQI GCTCTTC 1 cut(s) 57
BspTNI GGTCTC 2 cut(s) 86, 337
BsrBI CCGCTC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 96, 126, 144
BssMI GATC 4 cut(s) 165, 334, 643, 687
BssT1I CCWWGG 2 cut(s) 96, 144
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 641
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 74, 714
BstDEI CTNAG 2 cut(s) 270, 691
BstDSI CCRYGG 2 cut(s) 96, 144
BstKTI GATC 4 cut(s) 168, 337, 646, 690
BstMAI GTCTC 3 cut(s) 86, 337, 564
BstMBI GATC 4 cut(s) 165, 334, 643, 687
BstMWI GCNNNNNNNGC 2 cut(s) 73, 706
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 161, 426
BstV1I GCAGC 2 cut(s) 56, 696
BstX2I RGATCY 1 cut(s) 687
BstYI RGATCY 1 cut(s) 687
BsuRI GGCC 2 cut(s) 131, 161
BtgI CCRYGG 2 cut(s) 96, 144
BtgZI GCGATG 1 cut(s) 223
BtsIMutI CAGTG 3 cut(s) 330, 344, 646
Cac8I GCNNGC 2 cut(s) 74, 714
CaiI CAGNNNCTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 16, 261
CseI GACGC 1 cut(s) 546
Csp6I GTAC 2 cut(s) 442, 629
CspAI ACCGGT 1 cut(s) 346
CviAII CATG 5 cut(s) 97, 145, 208, 256, 314
CviJI RGCY 9 cut(s) 101, 107, 131, 137, 161, 415, 599, 700, 709
CviKI_1 RGCY 9 cut(s) 101, 107, 131, 137, 161, 415, 599, 700, 709
CviQI GTAC 2 cut(s) 442, 629
DdeI CTNAG 2 cut(s) 270, 691
DpnI GATC 4 cut(s) 167, 336, 645, 689
DpnII GATC 4 cut(s) 165, 334, 643, 687
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 96, 144
Eco147I AGGCCT 1 cut(s) 161
Eco31I GGTCTC 2 cut(s) 86, 337
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 16, 261
Eco57I CTGAAG 2 cut(s) 72, 584
Eco88I CYCGRG 2 cut(s) 102, 125
EcoRII CCWGG 1 cut(s) 161
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 96, 144
ErhI CCWWGG 2 cut(s) 96, 144
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 5 cut(s) 100, 148, 211, 259, 317
FatI CATG 5 cut(s) 96, 144, 207, 255, 313
FauI CCCGC 1 cut(s) 510
FauNDI CATATG 1 cut(s) 498
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 45, 267, 710
Fsp4HI GCNGC 3 cut(s) 45, 267, 710
FspBI CTAG 2 cut(s) 26, 453
GluI GCNGC 3 cut(s) 45, 267, 710
GsuI CTGGAG 1 cut(s) 722
HaeIII GGCC 2 cut(s) 131, 161
HapII CCGG 4 cut(s) 14, 191, 347, 428
HgaI GACGC 1 cut(s) 546
Hin1II CATG 5 cut(s) 100, 148, 211, 259, 317
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 170, 321, 365, 505, 744
HpaII CCGG 4 cut(s) 14, 191, 347, 428
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 6, 571
Hpy188I TCNGA 6 cut(s) 52, 82, 220, 547, 564, 687
Hpy188III TCNNGA 6 cut(s) 14, 247, 272, 487, 511, 635
Hpy8I GTNNAC 2 cut(s) 6, 571
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 3 cut(s) 523, 559, 658
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4IV ACGT 2 cut(s) 384, 722
HpyCH4V TGCA 2 cut(s) 255, 478
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 706
HpyF3I CTNAG 2 cut(s) 270, 691
HpySE526I ACGT 2 cut(s) 384, 722
Hsp92II CATG 5 cut(s) 100, 148, 211, 259, 317
Kpn2I TCCGGA 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 165, 334, 643, 687
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 221, 604, 697
Lsp1109I GCAGC 2 cut(s) 56, 696
LweI GCATC 3 cut(s) 56, 207, 465
MaeI CTAG 2 cut(s) 26, 453
MaeII ACGT 2 cut(s) 384, 722
MalI GATC 4 cut(s) 167, 336, 645, 689
MbiI CCGCTC 1 cut(s) 269
MboI GATC 4 cut(s) 165, 334, 643, 687
MboII GAAGA 9 cut(s) 65, 68, 71, 74, 95, 293, 296, 514, 538
MflI RGATCY 1 cut(s) 687
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 1 cut(s) 680
MlyI GAGTC 2 cut(s) 164, 374
MmeI TCCRAC 2 cut(s) 198, 349
MroI TCCGGA 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 1 cut(s) 728
MslI CAYNNNNRTG 1 cut(s) 576
MspI CCGG 4 cut(s) 14, 191, 347, 428
MspR9I CCNGG 2 cut(s) 163, 428
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 73, 706
NciI CCSGG 1 cut(s) 428
NcoI CCATGG 2 cut(s) 96, 144
NdeI CATATG 1 cut(s) 498
NdeII GATC 4 cut(s) 165, 334, 643, 687
NlaIII CATG 5 cut(s) 100, 148, 211, 259, 317
NspI RCATGY 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 102
PceI AGGCCT 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 321, 505, 744
PinAI ACCGGT 1 cut(s) 346
PkrI GCNGC 3 cut(s) 46, 268, 711
PleI GAGTC 2 cut(s) 164, 373
PpsI GAGTC 2 cut(s) 164, 373
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspPI GGNCC 2 cut(s) 16, 261
PspXI VCTCGAGB 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 687
RsaI GTAC 2 cut(s) 443, 630
RsaNI GTAC 2 cut(s) 442, 629
RseI CAYNNNNRTG 1 cut(s) 576
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 728
SatI GCNGC 3 cut(s) 45, 267, 710
Sau3AI GATC 4 cut(s) 165, 334, 643, 687
Sau96I GGNCC 2 cut(s) 16, 261
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 2 cut(s) 164, 374
ScrFI CCNGG 2 cut(s) 163, 428
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 3 cut(s) 56, 207, 465
Sfr274I CTCGAG 1 cut(s) 102
SinI GGWCC 2 cut(s) 16, 261
SlaI CTCGAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 3 cut(s) 102, 509, 633
SmoI CTYRAG 3 cut(s) 102, 509, 633
Sse9I AATT 1 cut(s) 680
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 3 cut(s) 264, 267, 517
SspMI CTAG 2 cut(s) 26, 453
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 161, 426
StyI CCWWGG 2 cut(s) 96, 144
TaaI ACNGT 1 cut(s) 641
TaiI ACGT 2 cut(s) 387, 725
TaqI TCGA 6 cut(s) 5, 103, 156, 168, 180, 319
TasI AATT 1 cut(s) 680
TatI WGTACW 1 cut(s) 441
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 3 cut(s) 321, 505, 744
Tru1I TTAA 1 cut(s) 728
Tru9I TTAA 1 cut(s) 728
TscAI CASTG 3 cut(s) 337, 344, 646
TseI GCWGC 2 cut(s) 44, 709
TspDTI ATGAA 4 cut(s) 175, 515, 602, 671
TspGWI ACGGA 1 cut(s) 676
TspRI CASTG 3 cut(s) 337, 344, 646
VpaK11BI GGWCC 2 cut(s) 16, 261
XapI RAATTY 1 cut(s) 680
XceI RCATGY 1 cut(s) 317
XhoI CTCGAG 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 2 cut(s) 26, 453
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.