Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006574

Physical Location & Seq

Genomic Coordinates Reverse (-)

20582083 .. 20584721

Gene Structure 2639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGACTGGAATTTCAAACTTAGCTCTGGTTATTTATCTGGATTCGATCAAGAACCAGATTTATCACCAATGGATGGTTCGATCTCGTTTGGTGGGTCGTCACAGTCAAAAGCGGATTTTTCATTTGATCTAAAACTTGGAAGAAACATTGGAAACTCTTCCTCTGTTTTTGGTGATACAGAGCAAGTGATTAGTCTTAGTAAGTGGAAAGATAGTGCTTTAGCTAAACCAGAAGGTTCAAGAAGCTCGAGTTCAAAGAGAACAAGAGGGAATGGTGTTGGAACCAACCAGATGCCGATTTGTCTTGTTGATGGATGTGATTCTGATTTTAGTAATTGTAGAGAGTATCATAAGAGACATAAAGTTTGTGATGTTCATTCAAAAACTCCTGTGGTTACTATTAATGGTCATAAACAGAGGTTTTGTCAACAATGCAGCAGGTTTCATGCTTTGGAGGAGTTTGATGAAGGGAAGAGAAGTTGTAGGAAACGTCTTGATGGACATAATCGAAGACGACGGAAGCCGCAGCCTGAACATATCGGTCGTCCTGCCAACTTCTTTACGGGTTTTCAAGGTAGCAAATTGCTAGAGTTTTCTGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGAGCTGGGGAAATAGTCTTGTAAGCGTTGCTGTAGCCGCCAATGGTTCGAGTTATGGGCAGAGCCAGAGCTATGTTGTTGGTTCTTCTCCTGCAAAGACAGGGATAATGTTTCCAATCTCTTCTTCTCCAAACAGTACCAGAAGCATAGCAAAACAATTCCCTTTCTTGCAAGAAGAAGAAAGCTCGAGAACCGCATCGTTGTGTGAGAGAATGACGAGTTGCATCCATGACTCTGATTGTGCTCTCTCTCTTCTGTCATCCTCCTCGTCGTCAGTCCCTCATTTGCTTCAACCACCACTTTCTTTGTCCCAAGAAGCAGTTGAGACAGTTTTTTACGGGTCGGGATTGTTTGAGAATGCGAGTGCAGTCTCTGATGGATCGGTTATATCCGGTAACGAGGCTGTCCGTCTTCCGCAGACATTCCCGTTTCATTGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

359

Amino Acids

39.11

Weight (kDa)

8.03

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	101 - 174	7.9e-31	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50570 AT5G50570 AT5G50670 AT5G50670
fragaria_vesca	FvH4_5g08580 FvH4_5g08580 FvH4_5g08580
malus_domestica	MD06G1138800.v1.1 MD14G1154900.v1.1
prunus_persica	Prupe.5G149000_v2.0.a1 Prupe.5G149000_v2.0.a1 Prupe.5G149000_v2.0.a1
pyrus_communis	pycom06g12990 pycom14g12880
rosa_chinensis	RchiOBHm_Chr7g0189811
rosa_laevigata	RLG00000004586
rosa_multiflora	Rmu_sc0000512.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265140
rosa_rugosa	Rorug06G0500100 Rorug06G0500100 Rorug06G0500100
rosa_samantha	Rh7AG105300 Rh7BG108100 Rh7CG110100 Rh7DG108300
rosa_wichuraiana	Rw7G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	5 cut(s)	113, 524, 675, 831, 1052
AclWI	GGATC	1 cut(s)	1024
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	1 cut(s)	775
AfiI	CCNNNNNNNGG	3 cut(s)	74, 643, 644
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	7 cut(s)	16, 240, 255, 381, 572, 634, 929
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 745, 777
AluBI	AGCT	6 cut(s)	24, 224, 246, 642, 708, 822
AluI	AGCT	6 cut(s)	24, 224, 246, 642, 708, 822
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	3 cut(s)	349, 956, 1012
AlwI	GGATC	1 cut(s)	1024
AlwNI	CAGNNNCTG	1 cut(s)	1010
Ama87I	CYCGRG	3 cut(s)	247, 637, 823
ApeKI	GCWGC	2 cut(s)	435, 526
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
AseI	ATTAAT	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	57, 185
AvaI	CYCGRG	3 cut(s)	247, 637, 823
BbsI	GAAGAC	2 cut(s)	517, 1040
Bbv12I	GWGCWC	1 cut(s)	883
BbvI	GCAGC	2 cut(s)	447, 538
BccI	CCATC	4 cut(s)	68, 305, 491, 1007
BcoDI	GTCTC	3 cut(s)	349, 956, 1012
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	1 cut(s)	669
BfuAI	ACCTGC	1 cut(s)	429
BisI	GCNGC	4 cut(s)	436, 524, 527, 675
BlsI	GCNGC	4 cut(s)	437, 525, 528, 676
BmeT110I	CYCGRG	3 cut(s)	247, 637, 823
BmiI	GGNNCC	1 cut(s)	283
BmsI	GCATC	3 cut(s)	282, 842, 870
BpiI	GAAGAC	2 cut(s)	517, 1040
BsaWI	WCCGGW	1 cut(s)	1028
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 643, 644
Bse1I	ACTGG	1 cut(s)	11
BseGI	GGATG	4 cut(s)	79, 320, 861, 896
BseLI	CCNNNNNNNGG	3 cut(s)	74, 643, 644
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	470, 892
BseXI	GCAGC	2 cut(s)	447, 538
BseYI	CCCAGC	1 cut(s)	642
BsgI	GTGCAG	1 cut(s)	1023
Bsh1285I	CGRYCG	1 cut(s)	544
BsiEI	CGRYCG	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	883
BsiHKCI	CYCGRG	3 cut(s)	247, 637, 823
BsiSI	CCGG	1 cut(s)	1029
BslFI	GGGAC	2 cut(s)	899, 931
BslI	CCNNNNNNNGG	3 cut(s)	74, 643, 644
BsmAI	GTCTC	3 cut(s)	349, 956, 1012
BsmFI	GGGAC	2 cut(s)	899, 931
BsmI	GAATGC	1 cut(s)	1000
BsoBI	CYCGRG	3 cut(s)	247, 637, 823
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	4 cut(s)	46, 81, 127, 1016
BspACI	CCGC	5 cut(s)	113, 524, 675, 831, 1052
BspLI	GGNNCC	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	1024
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	4 cut(s)	46, 81, 127, 1016
Bst4CI	ACNGT	3 cut(s)	105, 773, 967
Bst6I	CTCTTC	4 cut(s)	163, 467, 763, 894
BstDEI	CTNAG	2 cut(s)	20, 197
BstF5I	GGATG	4 cut(s)	79, 320, 861, 896
BstKTI	GATC	4 cut(s)	49, 84, 130, 1019
BstMAI	GTCTC	3 cut(s)	349, 956, 1012
BstMBI	GATC	4 cut(s)	46, 81, 127, 1016
BstMCI	CGRYCG	1 cut(s)	544
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	611
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	447, 538
BstV2I	GAAGAC	2 cut(s)	517, 1040
BtsCI	GGATG	4 cut(s)	79, 320, 861, 896
BveI	ACCTGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	1010
Csp6I	GTAC	1 cut(s)	774
CspCI	CAANNNNNGTGG	2 cut(s)	924, 959
CviAII	CATG	3 cut(s)	446, 608, 866
CviQI	GTAC	1 cut(s)	774
DdeI	CTNAG	2 cut(s)	20, 197
DpnI	GATC	4 cut(s)	48, 83, 129, 1018
DpnII	GATC	4 cut(s)	46, 81, 127, 1016
Eam1104I	CTCTTC	4 cut(s)	163, 467, 763, 894
EarI	CTCTTC	4 cut(s)	163, 467, 763, 894
Eco88I	CYCGRG	3 cut(s)	247, 637, 823
FaeI	CATG	3 cut(s)	449, 611, 869
FaqI	GGGAC	2 cut(s)	899, 931
FatI	CATG	3 cut(s)	445, 607, 865
Fnu4HI	GCNGC	4 cut(s)	436, 524, 527, 675
FokI	GGATG	4 cut(s)	86, 327, 848, 883
Fsp4HI	GCNGC	4 cut(s)	436, 524, 527, 675
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	4 cut(s)	436, 524, 527, 675
GsaI	CCCAGC	1 cut(s)	646
HapII	CCGG	1 cut(s)	1029
Hin1II	CATG	3 cut(s)	449, 611, 869
HincII	GTYRAC	1 cut(s)	428
HindII	GTYRAC	1 cut(s)	428
HinfI	GANTC	3 cut(s)	42, 320, 869
HpaII	CCGG	1 cut(s)	1029
HphI	GGTGA	2 cut(s)	57, 185
Hpy166II	GTNNAC	2 cut(s)	428, 605
Hpy188I	TCNGA	3 cut(s)	325, 874, 1012
Hpy188III	TCNNGA	6 cut(s)	39, 50, 240, 494, 825, 981
Hpy8I	GTNNAC	2 cut(s)	428, 605
Hpy99I	CGWCG	2 cut(s)	519, 910
HpyAV	CCTTC	2 cut(s)	227, 461
HpyCH4III	ACNGT	3 cut(s)	105, 773, 967
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	5 cut(s)	435, 731, 808, 861, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	2 cut(s)	20, 197
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	3 cut(s)	449, 611, 869
Kzo9I	GATC	4 cut(s)	46, 81, 127, 1016
Lsp1109I	GCAGC	2 cut(s)	447, 538
LweI	GCATC	3 cut(s)	282, 842, 870
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	3 cut(s)	99, 394, 1031
MalI	GATC	4 cut(s)	48, 83, 129, 1018
MboI	GATC	4 cut(s)	46, 81, 127, 1016
MhlI	GDGCHC	1 cut(s)	883
MluCI	AATT	4 cut(s)	10, 334, 581, 794
MlyI	GAGTC	1 cut(s)	863
MmeI	TCCRAC	2 cut(s)	259, 641
MnlI	CCTC	8 cut(s)	172, 260, 411, 448, 910, 913, 927, 1030
MroXI	GAANNNNTTC	1 cut(s)	157
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	838
MspI	CCGG	1 cut(s)	1029
Mva1269I	GAATGC	1 cut(s)	1000
MwoI	GCNNNNNNNGC	1 cut(s)	674
NdeII	GATC	4 cut(s)	46, 81, 127, 1016
NlaIII	CATG	3 cut(s)	449, 611, 869
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	611
PaeR7I	CTCGAG	2 cut(s)	247, 823
PciI	ACATGT	1 cut(s)	607
PctI	GAATGC	1 cut(s)	1000
PdmI	GAANNNNTTC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	42, 320
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	437, 525, 528, 676
PleI	GAGTC	1 cut(s)	863
PpsI	GAGTC	1 cut(s)	863
PscI	ACATGT	1 cut(s)	607
PshBI	ATTAAT	1 cut(s)	402
PspFI	CCCAGC	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	283
PspXI	VCTCGAGB	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	1010
RsaI	GTAC	1 cut(s)	775
RsaNI	GTAC	1 cut(s)	774
RseI	CAYNNNNRTG	1 cut(s)	838
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	4 cut(s)	436, 524, 527, 675
Sau3AI	GATC	4 cut(s)	46, 81, 127, 1016
SchI	GAGTC	1 cut(s)	863
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	3 cut(s)	282, 842, 870
SfcI	CTRYAG	1 cut(s)	669
Sfr274I	CTCGAG	2 cut(s)	247, 823
SlaI	CTCGAG	2 cut(s)	247, 823
SmiMI	CAYNNNNRTG	1 cut(s)	838
SmlI	CTYRAG	2 cut(s)	247, 823
SmoI	CTYRAG	2 cut(s)	247, 823
Sse9I	AATT	4 cut(s)	10, 334, 581, 794
SsiI	CCGC	5 cut(s)	113, 524, 675, 831, 1052
SspMI	CTAG	1 cut(s)	587
TaaI	ACNGT	3 cut(s)	105, 773, 967
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	6 cut(s)	45, 80, 248, 508, 686, 824
TaqII	GACCGA	1 cut(s)	530
TasI	AATT	4 cut(s)	10, 334, 581, 794
TauI	GCSGC	2 cut(s)	526, 677
TfiI	GAWTC	2 cut(s)	42, 320
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	435, 526
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	5 cut(s)	111, 365, 434, 480, 1058
TspGWI	ACGGA	2 cut(s)	532, 1034
Van91I	CCANNNNNTGG	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	611
XhoI	CTCGAG	2 cut(s)	247, 823
XmnI	GAANNNNTTC	1 cut(s)	157
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.