Prupe.5G149000_v2.0.a1

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
13587845 .. 13591533
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G149000.3

Sequence Viewer

Length: 1212 bp
ATGGACTGGAACTTGAAAGCACCTTCTTGGGATTTGACTGAACTAGAACAAGAAACCTTTTCCAACTTAGGCACAGTTGATGGGTCTAGTAGCTTTGGAGATCATAGGACCATCAAAGGCAACTTTTCTGTTGATTTGAAGCTTGGTCAGTTGGGTGATTCAGGTAACAATGAGTTGGTGGATATGTTGAAGGAGGCTGGGGGTCCGAAAACTACATCATCGCCTTCTGGACCATCAAAGAGGTCAAGAGCAGCTTACAGTGGATCGCAGACAGTCTCATGCCTTGTTGATGGCTGCAATTCAGACCTTAGTGTTTGTAGAGATTACCATAGGCGCCATAAAGTCTGTGAGCTCCACTCTAAGACTCCTCAGGTCACAATTAACGGCCAAAAGCAACGATTCTGCCAGCAGTGCAGCAGGTTCCATTCGCTGGAGGAATTTGATGAAGGAAAGAGAAGCTGCAGGAAGCGTCTTGATGGACACAATCGTAGACGAAGGAAGCCCCAACCAGAACCCTTGTCACGTTCAGGAAGTTTTTTGTCCAGTTACCAAGGTACACAATTGCTACCATTCTCCAGTTCACTTGTGTACCCCTCCACCACTGTTGTGAACCCAACCTGGGCTGGAGTTGTCAAAGCTGAGGCCGATACCGGTCTTCATAACCAGCATCTCCAACTGCCATTGATAGATAAACAAAACATGTTTCTTGGGTCCTCAACCAGCACCAGCAGCACCTACAAGGGAGGAAAGCAATTCTCACTTTTCCAAAGCTCCCCACTCCACAACCAAACATCTCATCATGGAGCATCTGTCTGCCAGCCCCTTCTGAATACCATTTCATTCTCAGAAACTGGTGGTGGGGCAAAGAGCAAAATGTTTTGTGACAGGCTAACAACTCAAATCCATGATTCGGATTGTGCTCTCTCTCTTCTGTCATCACCACAGACACAGCAGACATCTGAAATAGGTTTGAGACACATGGTGCAGCAGCCTAATTCAATATCTCTGATGCAACAACGATTAGGCCCCGGAGGCCTTCATGGGAACAACAGTATAGAGCCCATGGATTCAGTTCTGGTCTCCAATGGAAGTGAAGCAAATGTTCATTGCCCCGGAATGTTTCACCTAGGCTCTGATGGGTCCCTGGGGAACAATCAACAACATCAACATCAACATCAAGCCCCTCAAACACTTCCCTTCCATTGGCAGTAG

Protein Analysis

404

Amino Acids

44.19

Weight (kDa)

8.27

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 430
AccI GTMKAC 1 cut(s) 490
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 334
AdeI CACNNNGTG 1 cut(s) 982
AfaI GTAC 2 cut(s) 556, 590
AfiI CCNNNNNNNGG 4 cut(s) 430, 619, 910, 1203
AflIII ACRYGT 1 cut(s) 699
AgeI ACCGGT 1 cut(s) 650
AgsI TTSAA 4 cut(s) 16, 139, 190, 999
AjnI CCWGG 2 cut(s) 617, 1143
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 7 cut(s) 93, 142, 254, 352, 459, 638, 771
AluI AGCT 7 cut(s) 93, 142, 254, 352, 459, 638, 771
Alw21I GWGCWC 2 cut(s) 354, 922
Alw26I GTCTC 3 cut(s) 280, 967, 1084
AlwI GGATC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 851
AoxI GGCC 4 cut(s) 385, 642, 1024, 1033
ApeKI GCWGC 7 cut(s) 251, 294, 414, 459, 729, 985, 988
ApoI RAATTY 1 cut(s) 437
AsiGI ACCGGT 1 cut(s) 650
AspA2I CCTAGG 1 cut(s) 1126
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 6 cut(s) 108, 203, 230, 711, 1025, 1140
AsuC2I CCSGG 2 cut(s) 1029, 1113
AsuHPI GGTGA 3 cut(s) 167, 930, 1115
AvaII GGWCC 5 cut(s) 108, 203, 230, 711, 1140
AvrII CCTAGG 1 cut(s) 1126
AxyI CCTNAGG 1 cut(s) 369
BaeI ACNNNNGTAYC 2 cut(s) 572, 605
BanI GGYRCC 1 cut(s) 333
BanII GRGCYC 2 cut(s) 354, 1062
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 2 cut(s) 354, 922
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 7 cut(s) 263, 281, 426, 446, 741, 997, 1000
BccI CCATC 6 cut(s) 74, 119, 241, 284, 470, 1130
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 2 cut(s) 619, 1145
BcnI CCSGG 2 cut(s) 1029, 1113
BcoDI GTCTC 3 cut(s) 280, 967, 1084
BfaI CTAG 3 cut(s) 44, 87, 1127
BfmI CTRYAG 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 408
BglI GCCNNNNNGGC 1 cut(s) 1032
BisI GCNGC 7 cut(s) 252, 295, 415, 460, 730, 986, 989
BlnI CCTAGG 1 cut(s) 1126
BlsI GCNGC 7 cut(s) 253, 296, 416, 461, 731, 987, 990
Bme1390I CCNGG 4 cut(s) 619, 1029, 1113, 1145
Bme18I GGWCC 5 cut(s) 108, 203, 230, 711, 1140
BmgT120I GGNCC 6 cut(s) 108, 203, 230, 711, 1025, 1140
BmiI GGNNCC 7 cut(s) 204, 335, 422, 712, 1027, 1141, 1142
BmrFI CCNGG 4 cut(s) 619, 1029, 1113, 1145
BmsI GCATC 3 cut(s) 676, 815, 999
BpiI GAAGAC 1 cut(s) 647
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 3 cut(s) 452, 559, 645
Bpu10I CCTNAGC 1 cut(s) 639
BpuMI CCSGG 2 cut(s) 1029, 1113
BsaHI GRCGYC 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 1084
BsaJI CCNNGG 8 cut(s) 550, 618, 1027, 1062, 1111, 1126, 1143, 1144
BsaWI WCCGGW 1 cut(s) 650
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 4 cut(s) 430, 619, 910, 1203
Bse118I RCCGGY 1 cut(s) 650
Bse1I ACTGG 4 cut(s) 11, 543, 576, 856
Bse21I CCTNAGG 1 cut(s) 369
Bse3DI GCAATG 1 cut(s) 1105
BseBI CCWGG 2 cut(s) 619, 1145
BseDI CCNNGG 8 cut(s) 550, 618, 1027, 1062, 1111, 1126, 1143, 1144
BseLI CCNNNNNNNGG 4 cut(s) 430, 619, 910, 1203
BseMI GCAATG 1 cut(s) 1105
BseMII CTCAG 3 cut(s) 383, 630, 858
BseNI ACTGG 4 cut(s) 11, 543, 576, 856
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 7 cut(s) 263, 281, 426, 446, 741, 997, 1000
BseYI CCCAGC 1 cut(s) 197
BsgI GTGCAG 2 cut(s) 433, 1004
BshFI GGCC 4 cut(s) 387, 644, 1026, 1035
BshNI GGYRCC 1 cut(s) 333
BshTI ACCGGT 1 cut(s) 650
BsiHKAI GWGCWC 2 cut(s) 354, 922
BsiSI CCGG 3 cut(s) 651, 1029, 1113
BslFI GGGAC 1 cut(s) 1126
BslI CCNNNNNNNGG 4 cut(s) 430, 619, 910, 1203
BsmAI GTCTC 3 cut(s) 280, 967, 1084
BsmFI GGGAC 1 cut(s) 1126
BsnI GGCC 4 cut(s) 387, 644, 1026, 1035
Bso31I GGTCTC 1 cut(s) 1084
Bsp1286I GDGCHC 3 cut(s) 354, 922, 1062
Bsp143I GATC 2 cut(s) 100, 263
Bsp19I CCATGG 1 cut(s) 1062
BspANI GGCC 4 cut(s) 387, 644, 1026, 1035
BspCNI CTCAG 3 cut(s) 382, 631, 857
BspLI GGNNCC 7 cut(s) 204, 335, 422, 712, 1027, 1141, 1142
BspMAI CTGCAG 1 cut(s) 464
BspMI ACCTGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 1084
BsrDI GCAATG 1 cut(s) 1105
BsrFI RCCGGY 1 cut(s) 650
BsrI ACTGG 4 cut(s) 11, 543, 576, 856
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 8 cut(s) 550, 618, 1027, 1062, 1111, 1126, 1143, 1144
BssMI GATC 2 cut(s) 100, 263
BssNI GRCGYC 1 cut(s) 334
BssT1I CCWWGG 3 cut(s) 550, 1062, 1126
Bst2UI CCWGG 2 cut(s) 619, 1145
Bst4CI ACNGT 5 cut(s) 76, 260, 274, 604, 1052
Bst6I CTCTTC 1 cut(s) 933
BstACI GRCGYC 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 407, 818
BstDEI CTNAG 6 cut(s) 67, 308, 360, 369, 639, 844
BstDSI CCRYGG 1 cut(s) 1062
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 103, 266
BstMAI GTCTC 3 cut(s) 280, 967, 1084
BstMBI GATC 2 cut(s) 100, 263
BstMWI GCNNNNNNNGC 3 cut(s) 411, 729, 1032
BstNI CCWGG 2 cut(s) 619, 1145
BstNSI RCATGY 1 cut(s) 703
BstSCI CCNGG 4 cut(s) 617, 1027, 1111, 1143
BstSFI CTRYAG 1 cut(s) 460
BstV1I GCAGC 7 cut(s) 263, 281, 426, 446, 741, 997, 1000
BstV2I GAAGAC 1 cut(s) 647
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 4 cut(s) 387, 644, 1026, 1035
BtgI CCRYGG 1 cut(s) 1062
BtgZI GCGATG 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 3 cut(s) 265, 416, 600
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 407, 818
CaiI CAGNNNCTG 1 cut(s) 851
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 650
Cfr13I GGNCC 6 cut(s) 108, 203, 230, 711, 1025, 1140
CseI GACGC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 555, 589
CspAI ACCGGT 1 cut(s) 650
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 7 cut(s) 279, 700, 800, 905, 979, 1040, 1063
CviQI GTAC 2 cut(s) 555, 589
DdeI CTNAG 6 cut(s) 67, 308, 360, 369, 639, 844
DinI GGCGCC 1 cut(s) 335
DpnI GATC 2 cut(s) 102, 265
DpnII GATC 2 cut(s) 100, 263
DraIII CACNNNGTG 1 cut(s) 982
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 933
EarI CTCTTC 1 cut(s) 933
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 3 cut(s) 550, 1062, 1126
Eco147I AGGCCT 1 cut(s) 1035
Eco24I GRGCYC 2 cut(s) 354, 1062
Eco31I GGTCTC 1 cut(s) 1084
Eco47I GGWCC 5 cut(s) 108, 203, 230, 711, 1140
Eco53kI GAGCTC 1 cut(s) 352
Eco81I CCTNAGG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 352
EcoO109I RGGNCCY 3 cut(s) 711, 1025, 1140
EcoRII CCWGG 2 cut(s) 617, 1143
EcoT14I CCWWGG 3 cut(s) 550, 1062, 1126
EcoT38I GRGCYC 2 cut(s) 354, 1062
EgeI GGCGCC 1 cut(s) 335
EheI GGCGCC 1 cut(s) 335
ErhI CCWWGG 3 cut(s) 550, 1062, 1126
FaeI CATG 7 cut(s) 282, 703, 803, 908, 982, 1043, 1066
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FaqI GGGAC 1 cut(s) 1126
FatI CATG 7 cut(s) 278, 699, 799, 904, 978, 1039, 1062
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 7 cut(s) 252, 295, 415, 460, 730, 986, 989
FriOI GRGCYC 2 cut(s) 354, 1062
Fsp4HI GCNGC 7 cut(s) 252, 295, 415, 460, 730, 986, 989
FspBI CTAG 3 cut(s) 44, 87, 1127
GlaI GCGC 1 cut(s) 335
GluI GCNGC 7 cut(s) 252, 295, 415, 460, 730, 986, 989
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 3 cut(s) 452, 559, 645
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 4 cut(s) 387, 644, 1026, 1035
HapII CCGG 3 cut(s) 651, 1029, 1113
HgaI GACGC 1 cut(s) 458
HhaI GCGC 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 334
Hin1II CATG 7 cut(s) 282, 703, 803, 908, 982, 1043, 1066
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 5 cut(s) 158, 364, 399, 908, 1067
HpaII CCGG 3 cut(s) 651, 1029, 1113
HphI GGTGA 3 cut(s) 167, 930, 1115
Hpy166II GTNNAC 5 cut(s) 491, 557, 581, 589, 610
Hpy188I TCNGA 8 cut(s) 207, 304, 828, 847, 913, 961, 1008, 1135
Hpy188III TCNNGA 4 cut(s) 228, 246, 473, 528
Hpy8I GTNNAC 5 cut(s) 491, 557, 581, 589, 610
HpyAV CCTTC 8 cut(s) 33, 184, 234, 440, 489, 833, 1046, 1207
HpyCH4III ACNGT 5 cut(s) 76, 260, 274, 604, 1052
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 5 cut(s) 297, 414, 462, 985, 1012
HpyF10VI GCNNNNNNNGC 3 cut(s) 411, 729, 1032
HpyF3I CTNAG 6 cut(s) 67, 308, 360, 369, 639, 844
HpySE526I ACGT 1 cut(s) 523
Hsp92I GRCGYC 1 cut(s) 334
Hsp92II CATG 7 cut(s) 282, 703, 803, 908, 982, 1043, 1066
HspAI GCGC 1 cut(s) 334
KasI GGCGCC 1 cut(s) 333
KflI GGGWCCC 1 cut(s) 1140
Kzo9I GATC 2 cut(s) 100, 263
LmnI GCTCC 3 cut(s) 357, 776, 803
Lsp1109I GCAGC 7 cut(s) 263, 281, 426, 446, 741, 997, 1000
LweI GCATC 3 cut(s) 676, 815, 999
MaeI CTAG 3 cut(s) 44, 87, 1127
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 5 cut(s) 164, 373, 519, 545, 881
MalI GATC 2 cut(s) 102, 265
MboI GATC 2 cut(s) 100, 263
MboII GAAGA 2 cut(s) 647, 920
MfeI CAATTG 1 cut(s) 560
MhlI GDGCHC 3 cut(s) 354, 922, 1062
MluCI AATT 6 cut(s) 298, 378, 437, 560, 752, 994
Mly113I GGCGCC 1 cut(s) 334
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 2 cut(s) 87, 697
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 605
MspI CCGG 3 cut(s) 651, 1029, 1113
MspR9I CCNGG 4 cut(s) 619, 1029, 1113, 1145
MunI CAATTG 1 cut(s) 560
MvaI CCWGG 2 cut(s) 619, 1145
MwoI GCNNNNNNNGC 3 cut(s) 411, 729, 1032
NarI GGCGCC 1 cut(s) 334
NciI CCSGG 2 cut(s) 1029, 1113
NcoI CCATGG 1 cut(s) 1062
NdeII GATC 2 cut(s) 100, 263
NlaIII CATG 7 cut(s) 282, 703, 803, 908, 982, 1043, 1066
NlaIV GGNNCC 7 cut(s) 204, 335, 422, 712, 1027, 1141, 1142
NmuCI GTSAC 3 cut(s) 373, 519, 881
NspI RCATGY 1 cut(s) 703
OliI CACNNNNGTG 1 cut(s) 605
PasI CCCWGGG 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 1035
PciI ACATGT 1 cut(s) 699
PfeI GAWTC 4 cut(s) 158, 399, 908, 1067
PflMI CCANNNNNTGG 1 cut(s) 430
PinAI ACCGGT 1 cut(s) 650
PkrI GCNGC 7 cut(s) 253, 296, 416, 461, 731, 987, 990
PleI GAGTC 1 cut(s) 358
PluTI GGCGCC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 358
PpuMI RGGWCCY 2 cut(s) 711, 1140
PscI ACATGT 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 354
Psp5II RGGWCCY 2 cut(s) 711, 1140
Psp6I CCWGG 2 cut(s) 617, 1143
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 2 cut(s) 617, 1143
PspN4I GGNNCC 7 cut(s) 204, 335, 422, 712, 1027, 1141, 1142
PspPI GGNCC 6 cut(s) 108, 203, 230, 711, 1025, 1140
PspPPI RGGWCCY 2 cut(s) 711, 1140
PstI CTGCAG 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 851
RsaI GTAC 2 cut(s) 556, 590
RsaNI GTAC 2 cut(s) 555, 589
RseI CAYNNNNRTG 1 cut(s) 605
SacI GAGCTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 7 cut(s) 252, 295, 415, 460, 730, 986, 989
Sau3AI GATC 2 cut(s) 100, 263
Sau96I GGNCC 6 cut(s) 108, 203, 230, 711, 1025, 1140
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 4 cut(s) 619, 1029, 1113, 1145
SduI GDGCHC 3 cut(s) 354, 922, 1062
SfaNI GCATC 3 cut(s) 676, 815, 999
SfcI CTRYAG 1 cut(s) 460
SfiI GGCCNNNNNGGCC 1 cut(s) 1032
SfoI GGCGCC 1 cut(s) 335
SinI GGWCC 5 cut(s) 108, 203, 230, 711, 1140
SmiMI CAYNNNNRTG 1 cut(s) 605
Sse9I AATT 6 cut(s) 298, 378, 437, 560, 752, 994
SseBI AGGCCT 1 cut(s) 1035
SspDI GGCGCC 1 cut(s) 333
SspMI CTAG 3 cut(s) 44, 87, 1127
SstI GAGCTC 1 cut(s) 354
StuI AGGCCT 1 cut(s) 1035
StyD4I CCNGG 4 cut(s) 617, 1027, 1111, 1143
StyI CCWWGG 3 cut(s) 550, 1062, 1126
TaaI ACNGT 5 cut(s) 76, 260, 274, 604, 1052
TaiI ACGT 1 cut(s) 526
TasI AATT 6 cut(s) 298, 378, 437, 560, 752, 994
TfiI GAWTC 4 cut(s) 158, 399, 908, 1067
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 3 cut(s) 265, 416, 607
TseFI GTSAC 3 cut(s) 373, 519, 881
TseI GCWGC 7 cut(s) 251, 294, 414, 459, 729, 985, 988
Tsp45I GTSAC 3 cut(s) 373, 519, 881
TspDTI ATGAA 5 cut(s) 459, 647, 828, 1028, 1094
TspRI CASTG 3 cut(s) 265, 416, 607
Van91I CCANNNNNTGG 1 cut(s) 430
VpaK11BI GGWCC 5 cut(s) 108, 203, 230, 711, 1140
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 703
XmaJI CCTAGG 1 cut(s) 1126
XmiI GTMKAC 1 cut(s) 490
XspI CTAG 3 cut(s) 44, 87, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.