Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006574

Physical Location & Seq

Genomic Coordinates Reverse (-)

61550003 .. 61552620

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0500100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCCTCATTGCGCTAACATTCTCTGCAGAGGCCCAATCCATTACACTCAAACTGCGTCGTTTCGATCTGGACTGCCAAGTGTGTACAAAAGTACGTACTCCAAAGTCCAAAGCAAAAGAGCTTCGCTTCGGAGTTTGGACTGTTCGCTTCGCCGGAGCATCACGGCCAGTCTAACTTCAGCCATGGCGGATCCCTACCAGAGATACGCTGCTCCGCCGGAACGAGGTAGTGTAGCAAAGTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTGCTTTCGAATCACACTTTTGCCCCTACTGAATTGAGAAGCTATTCTTCGGATTTTCTGCTGAGAGATAAATCGTTGGGGTCTGTGCCGTATGGTGTAGATGATAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTAGCCTATATGATCCTCTGGAAGATACTTATCGAAGCCAGAGACGGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGCTGAACCTCGTCTTACTGTAACAGCAGGGGCTGGTTTTCCATCTCCTTTACAAGCTCAGACTTTATTAAACCAAAGACATGAGGTTGGAGCTGGCATTGGCTCAAGTGTTTCTACTGACTTCAGTAGAGAAAGGTCTGTGCCTTCGAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTAGACGCAGTGGAGATAAGGCAATGGTTTTATGCTTTGTGGAGTTTGTGGATCCAAAGTGTGCTTTGACTGCTATGGAAGCTCTACAAGGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGAGGATCCACTTTGCACATTTTCCTTTCCGTCTACCATCTGATTCCGATCAGAAACGAAGTGGAATCCGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

346

Amino Acids

37.96

Weight (kDa)

9.42

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	245 - 316	9.4e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50570 AT5G50570 AT5G50670 AT5G50670
fragaria_vesca	FvH4_5g08580 FvH4_5g08580 FvH4_5g08580
malus_domestica	MD06G1138800.v1.1 MD14G1154900.v1.1
prunus_persica	Prupe.5G149000_v2.0.a1 Prupe.5G149000_v2.0.a1 Prupe.5G149000_v2.0.a1
pyrus_communis	pycom06g12990 pycom14g12880
rosa_chinensis	RchiOBHm_Chr7g0189811
rosa_laevigata	RLG00000004586
rosa_multiflora	Rmu_sc0000512.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265140
rosa_rugosa	Rorug06G0500100 Rorug06G0500100 Rorug06G0500100
rosa_samantha	Rh7AG105300 Rh7BG108100 Rh7CG110100 Rh7DG108300
rosa_wichuraiana	Rw7G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccI	GTMKAC	1 cut(s)	997
AciI	CCGC	2 cut(s)	188, 215
AclWI	GGATC	7 cut(s)	185, 198, 434, 881, 894, 964, 977
AcoI	YGGCCR	1 cut(s)	165
AcuI	CTGAAG	2 cut(s)	162, 646
AcyI	GRCGYC	1 cut(s)	497
AfaI	GTAC	4 cut(s)	86, 94, 98, 763
AfiI	CCNNNNNNNGG	4 cut(s)	224, 472, 718, 800
AjnI	CCWGG	2 cut(s)	250, 499
AluBI	AGCT	5 cut(s)	122, 321, 596, 632, 917
AluI	AGCT	5 cut(s)	122, 321, 596, 632, 917
Alw26I	GTCTC	2 cut(s)	463, 707
AlwI	GGATC	7 cut(s)	185, 198, 434, 881, 894, 964, 977
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	3 cut(s)	31, 165, 778
ApeKI	GCWGC	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	427, 707
AsuII	TTCGAA	1 cut(s)	287
BamHI	GGATCC	3 cut(s)	190, 886, 969
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	6 cut(s)	283, 589, 692, 737, 789, 1009
BceAI	ACGGC	2 cut(s)	180, 352
BciT130I	CCWGG	2 cut(s)	252, 501
BcoDI	GTCTC	2 cut(s)	463, 707
BfaI	CTAG	2 cut(s)	429, 837
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	252, 501
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	4 cut(s)	192, 834, 888, 971
BmrFI	CCNGG	2 cut(s)	252, 501
BmrI	ACTGGG	1 cut(s)	701
BmsI	GCATC	2 cut(s)	168, 508
BmuI	ACTGGG	1 cut(s)	701
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	96
BsaBI	GATNNNNATC	2 cut(s)	456, 1011
BsaHI	GRCGYC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	2 cut(s)	183, 500
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 472, 718, 800
Bse1I	ACTGG	2 cut(s)	168, 707
Bse3DI	GCAATG	2 cut(s)	7, 864
Bse8I	GATNNNNATC	2 cut(s)	456, 1011
BseBI	CCWGG	2 cut(s)	252, 501
BseDI	CCNNGG	2 cut(s)	183, 500
BseGI	GGATG	2 cut(s)	263, 748
BseJI	GATNNNNATC	2 cut(s)	456, 1011
BseLI	CCNNNNNNNGG	4 cut(s)	224, 472, 718, 800
BseMI	GCAATG	2 cut(s)	7, 864
BseMII	CTCAG	2 cut(s)	332, 611
BseNI	ACTGG	2 cut(s)	168, 707
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	3 cut(s)	33, 167, 780
BsiSI	CCGG	2 cut(s)	154, 218
BslI	CCNNNNNNNGG	4 cut(s)	224, 472, 718, 800
BsmAI	GTCTC	2 cut(s)	463, 707
BsmBI	CGTCTC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	33, 167, 780
Bso31I	GGTCTC	1 cut(s)	707
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	6 cut(s)	65, 190, 439, 886, 969, 1012
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	2 cut(s)	188, 215
BspANI	GGCC	3 cut(s)	33, 167, 780
BspCNI	CTCAG	2 cut(s)	333, 610
BspLI	GGNNCC	4 cut(s)	192, 834, 888, 971
BspMAI	CTGCAG	1 cut(s)	29
BspPI	GGATC	7 cut(s)	185, 198, 434, 881, 894, 964, 977
BspT104I	TTCGAA	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	707
BsrDI	GCAATG	2 cut(s)	7, 864
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	168, 707
BssECI	CCNNGG	2 cut(s)	183, 500
BssMI	GATC	6 cut(s)	65, 190, 439, 886, 969, 1012
BssNI	GRCGYC	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	252, 501
Bst4CI	ACNGT	3 cut(s)	143, 559, 761
Bst6I	CTCTTC	1 cut(s)	763
BstACI	GRCGYC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	2 cut(s)	341, 597
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	263, 748
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	6 cut(s)	68, 193, 442, 889, 972, 1015
BstMAI	GTCTC	2 cut(s)	463, 707
BstMBI	GATC	6 cut(s)	65, 190, 439, 886, 969, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	905, 914
BstNI	CCWGG	2 cut(s)	252, 501
BstSCI	CCNGG	2 cut(s)	250, 499
BstSFI	CTRYAG	1 cut(s)	25
BstSNI	TACGTA	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	190, 886, 969
BstYI	RGATCY	3 cut(s)	190, 886, 969
BsuRI	GGCC	3 cut(s)	33, 167, 780
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	263, 748
BtsI	GCAGTG	1 cut(s)	850
BtsIMutI	CAGTG	3 cut(s)	753, 850, 1036
Cac8I	GCNNGC	1 cut(s)	634
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	3 cut(s)	45, 505, 849
Csp6I	GTAC	4 cut(s)	85, 93, 97, 762
CviAII	CATG	2 cut(s)	184, 620
CviQI	GTAC	4 cut(s)	85, 93, 97, 762
DdeI	CTNAG	2 cut(s)	341, 597
DpnI	GATC	6 cut(s)	67, 192, 441, 888, 971, 1014
DpnII	GATC	6 cut(s)	65, 190, 439, 886, 969, 1012
DraI	TTTAAA	1 cut(s)	808
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	763
EarI	CTCTTC	1 cut(s)	763
EciI	GGCGGA	2 cut(s)	203, 204
Eco105I	TACGTA	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	707
Eco57I	CTGAAG	2 cut(s)	162, 646
EcoRII	CCWGG	2 cut(s)	250, 499
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	2 cut(s)	187, 623
FaiI	YATR	8 cut(s)	185, 372, 436, 438, 510, 621, 868, 911
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FatI	CATG	2 cut(s)	183, 619
FblI	GTMKAC	1 cut(s)	997
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	2 cut(s)	250, 755
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	429, 837
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	33, 167, 780
HapII	CCGG	2 cut(s)	154, 218
HgaI	GACGC	3 cut(s)	45, 505, 849
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	497
Hin1II	CATG	2 cut(s)	187, 623
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	6 cut(s)	289, 401, 722, 953, 1007, 1029
HpaII	CCGG	2 cut(s)	154, 218
HphI	GGTGA	2 cut(s)	427, 707
Hpy166II	GTNNAC	3 cut(s)	85, 826, 998
Hpy188I	TCNGA	9 cut(s)	132, 268, 331, 400, 600, 1006, 1012, 1017, 1034
Hpy188III	TCNNGA	3 cut(s)	69, 446, 712
Hpy8I	GTNNAC	3 cut(s)	85, 826, 998
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	693, 968
HpyCH4III	ACNGT	3 cut(s)	143, 559, 761
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	27, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	905, 914
HpyF3I	CTNAG	2 cut(s)	341, 597
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	497
Hsp92II	CATG	2 cut(s)	187, 623
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	6 cut(s)	65, 190, 439, 886, 969, 1012
LmnI	GCTCC	4 cut(s)	156, 217, 629, 832
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	168, 508
MaeI	CTAG	2 cut(s)	429, 837
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	4 cut(s)	254, 415, 559, 926
MalI	GATC	6 cut(s)	67, 192, 441, 888, 971, 1014
MboI	GATC	6 cut(s)	65, 190, 439, 886, 969, 1012
MboII	GAAGA	3 cut(s)	318, 461, 780
MflI	RGATCY	3 cut(s)	190, 886, 969
MluCI	AATT	2 cut(s)	244, 311
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	9 cut(s)	15, 23, 218, 453, 480, 558, 616, 681, 960
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	2 cut(s)	608, 807
MspI	CCGG	2 cut(s)	154, 218
MspR9I	CCNGG	2 cut(s)	252, 501
MvaI	CCWGG	2 cut(s)	252, 501
MwoI	GCNNNNNNNGC	2 cut(s)	905, 914
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	6 cut(s)	65, 190, 439, 886, 969, 1012
NlaIII	CATG	2 cut(s)	187, 623
NlaIV	GGNNCC	4 cut(s)	192, 834, 888, 971
NmuCI	GTSAC	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	6 cut(s)	289, 401, 722, 953, 1007, 1029
PflMI	CCANNNNNTGG	1 cut(s)	800
PkrI	GCNGC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	250, 499
PspGI	CCWGG	2 cut(s)	250, 499
PspN4I	GGNNCC	4 cut(s)	192, 834, 888, 971
PspPI	GGNCC	1 cut(s)	32
PsrI	GAACNNNNNNTAC	2 cut(s)	379, 411
PstI	CTGCAG	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	3 cut(s)	190, 886, 969
RsaI	GTAC	4 cut(s)	86, 94, 98, 763
RsaNI	GTAC	4 cut(s)	85, 93, 97, 762
SaqAI	TTAA	2 cut(s)	608, 807
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	6 cut(s)	65, 190, 439, 886, 969, 1012
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	252, 501
SfaNI	GCATC	2 cut(s)	168, 508
SfcI	CTRYAG	1 cut(s)	25
SfuI	TTCGAA	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
SnaBI	TACGTA	1 cut(s)	96
Sse9I	AATT	2 cut(s)	244, 311
SsiI	CCGC	2 cut(s)	188, 215
SspMI	CTAG	2 cut(s)	429, 837
StyD4I	CCNGG	2 cut(s)	250, 499
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	3 cut(s)	143, 559, 761
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	4 cut(s)	64, 287, 460, 686
TasI	AATT	2 cut(s)	244, 311
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	6 cut(s)	289, 401, 722, 953, 1007, 1029
Tru1I	TTAA	2 cut(s)	608, 807
Tru9I	TTAA	2 cut(s)	608, 807
TscAI	CASTG	2 cut(s)	760, 850
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	787
TspGWI	ACGGA	1 cut(s)	983
TspRI	CASTG	2 cut(s)	760, 850
Van91I	CCANNNNNTGG	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	997
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	2 cut(s)	429, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.