pycom06g12990

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
18096466 .. 18098714
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12990.2

Sequence Viewer

Length: 1245 bp
ATGGACTGGAACTCGAAAGCAGCTTCTTGGGATTTGCCTGAACTAGAACAAGGAACCTTTTCTAACTTAGACTCTACAGTTGATGGGTCTAGCAGCTTTGGAGATCATAGGACCTTCAAAGGCAGCAACTTTTCGGTTGATTTGAAGCTTGGTCAGTTGGGTGCCCCTGGGAATAATGAGCTCGTGGGTATGCTGAAGGAGCCGGGTGGTCCGAAAACTACCTCATCATCTCCTTCTGGACCATTAAAGAGGTCAAGAGCGGCTTACAGTGGATCTCAGATGGTTTCATGCCTCGTTGGTGGATGCAATTCGGACCTTAGTACTTGTAGGGATTACCATCGGCGGCATAAGGTCTGTGAGCTACATTCAAAGACTCCTCAGGTCACTATTAACGGTAACAAGCAACGATTTTGCCAGCAGTGTAGCAGGTTCCATGCTCCGGAGGAATTTGATGAGGGAAAGAGAAGTTGCAGGAAACGTCTTGATGGACACAACCGGCGGCGAAGGAAGCCTCAACCAGAACCCTTGTCGCACCCGGGAAGCTTTCTGTCCAATTACCAAGGTACCCAATTGTTGCCATTCTCTAGTTCACTTGTATACCCCTCCACCAATGTCATAAACCCTGCCTGGGCCGGCATTGTCAAAACTGAGCCAGATTCCGGGGTTCATAACCTCCAACTGCCATTGATTGATAAGCAAAACATGTTCCTTGGGTCCTCAGGCAGCACTAGCAGCAGCGGTTACGAGGGAGGAAAGCAGTTCTCGCTCTTCCAGAGCAACAACAGCTCTCCACTTTACCACAACCACCAAACATCTCATCATCACGGCACTTCTGTCTGCCAACCCCTTCTCAACAACATTTCATCCTCCGAAACTGCTAGTGGTGGTGGTGGGACAACAAAGAGCAAGATGTTTTGTGACAGGTTAACAACTCAAATCCATGATTCGGACTGTGCTCTCTCTCTTCTGTCATCACCACAGACGCAGCAGACATCTGAAATAGGTTTGAGACACACAGTGCAGCAGCCTAACTCAATCTCTCTGATGCAACAACGACCAGGCCCCAACGGTCTACGCGGAAACAACAGTGCCATGGAGCCCATGGATTCAGTTTTGGTCTCCAATGGAAGTGGTGATGCAAATGTCCATTGCCCCGGAATGTTTCGGTTAATCTCTGATGGTTCTCAGGGCAATGGGAATCAACACCATCAATCCCCTCAAACACTTCCCTTTCATTGGCAGTAG

Protein Analysis

415

Amino Acids

44.98

Weight (kDa)

8.61

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 563
AccB1I GGYRCC 2 cut(s) 161, 563
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 2 cut(s) 597, 1072
AccII CGCG 1 cut(s) 1077
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 5 cut(s) 260, 343, 499, 738, 1077
AclWI GGATC 1 cut(s) 280
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 1018
AfaI GTAC 2 cut(s) 322, 565
AfiI CCNNNNNNNGG 5 cut(s) 439, 628, 659, 946, 1236
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 3 cut(s) 118, 145, 369
AjnI CCWGG 3 cut(s) 166, 626, 1057
AluBI AGCT 7 cut(s) 23, 96, 148, 181, 361, 543, 786
AluI AGCT 7 cut(s) 23, 96, 148, 181, 361, 543, 786
Alw21I GWGCWC 2 cut(s) 183, 958
Alw26I GTCTC 2 cut(s) 1003, 1123
AlwI GGATC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 535
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 2 cut(s) 630, 1060
ApeKI GCWGC 9 cut(s) 20, 93, 123, 723, 732, 735, 985, 1021, 1024
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 58
Asp718I GGTACC 1 cut(s) 563
AspS9I GGNCC 7 cut(s) 111, 209, 239, 313, 630, 714, 1061
AsuC2I CCSGG 5 cut(s) 204, 536, 537, 661, 1155
AsuHPI GGTGA 2 cut(s) 966, 1145
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 5 cut(s) 111, 209, 239, 313, 714
AxyI CCTNAGG 2 cut(s) 378, 718
BaeGI GKGCMC 1 cut(s) 166
BaeI ACNNNNGTAYC 2 cut(s) 547, 580
BanI GGYRCC 2 cut(s) 161, 563
BanII GRGCYC 2 cut(s) 183, 1101
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 183, 958
BbvI GCAGC 9 cut(s) 32, 105, 135, 735, 744, 747, 997, 1033, 1036
BccI CCATC 6 cut(s) 77, 274, 345, 479, 1172, 1215
BceAI ACGGC 1 cut(s) 841
BciT130I CCWGG 3 cut(s) 168, 628, 1059
BcnI CCSGG 5 cut(s) 204, 536, 537, 661, 1155
BcoDI GTCTC 2 cut(s) 1003, 1123
BfaI CTAG 5 cut(s) 44, 90, 585, 729, 879
BfmI CTRYAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 8 cut(s) 168, 204, 536, 537, 628, 661, 1059, 1155
Bme18I GGWCC 5 cut(s) 111, 209, 239, 313, 714
BmeT110I CYCGRG 1 cut(s) 535
BmgT120I GGNCC 7 cut(s) 111, 209, 239, 313, 630, 714, 1061
BmiI GGNNCC 8 cut(s) 55, 163, 201, 431, 565, 715, 1063, 1098
BmrFI CCNGG 8 cut(s) 168, 204, 536, 537, 628, 661, 1059, 1155
BmsI GCATC 3 cut(s) 293, 1035, 1126
BpuMI CCSGG 5 cut(s) 204, 536, 537, 661, 1155
BsaBI GATNNNNATC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 1123
BsaWI WCCGGW 1 cut(s) 439
Bsc4I CCNNNNNNNGG 5 cut(s) 439, 628, 659, 946, 1236
Bse118I RCCGGY 2 cut(s) 495, 632
Bse1I ACTGG 1 cut(s) 11
Bse21I CCTNAGG 2 cut(s) 378, 718
Bse3DI GCAATG 2 cut(s) 1147, 1198
Bse8I GATNNNNATC 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 3 cut(s) 168, 628, 1059
BseGI GGATG 2 cut(s) 308, 863
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 5 cut(s) 439, 628, 659, 946, 1236
BseMI GCAATG 2 cut(s) 1147, 1198
BseMII CTCAG 5 cut(s) 290, 392, 639, 732, 1199
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 9 cut(s) 32, 105, 135, 735, 744, 747, 997, 1033, 1036
BsgI GTGCAG 1 cut(s) 1040
Bsh1236I CGCG 1 cut(s) 1077
BshFI GGCC 2 cut(s) 632, 1062
BshNI GGYRCC 2 cut(s) 161, 563
BsiHKAI GWGCWC 2 cut(s) 183, 958
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 7 cut(s) 203, 440, 496, 536, 633, 660, 1155
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 5 cut(s) 439, 628, 659, 946, 1236
BsmAI GTCTC 2 cut(s) 1003, 1123
BsmFI GGGAC 1 cut(s) 907
BsnI GGCC 2 cut(s) 632, 1062
Bso31I GGTCTC 1 cut(s) 1123
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 4 cut(s) 166, 183, 958, 1101
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 2 cut(s) 103, 272
Bsp19I CCATGG 2 cut(s) 1092, 1101
BspACI CCGC 5 cut(s) 260, 343, 499, 738, 1077
BspANI GGCC 2 cut(s) 632, 1062
BspCNI CTCAG 5 cut(s) 289, 391, 640, 731, 1198
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 1077
BspLI GGNNCC 8 cut(s) 55, 163, 201, 431, 565, 715, 1063, 1098
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 773
BspT107I GGYRCC 2 cut(s) 161, 563
BspTNI GGTCTC 1 cut(s) 1123
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 1147, 1198
BsrFI RCCGGY 2 cut(s) 495, 632
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 2 cut(s) 495, 632
BssMI GATC 2 cut(s) 103, 272
BssNAI GTATAC 1 cut(s) 598
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 4 cut(s) 559, 709, 1092, 1101
Bst1107I GTATAC 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 168, 628, 1059
Bst4CI ACNGT 7 cut(s) 79, 269, 395, 953, 1018, 1070, 1088
Bst6I CTCTTC 2 cut(s) 773, 969
BstC8I GCNNGC 2 cut(s) 416, 634
BstDEI CTNAG 7 cut(s) 67, 276, 317, 378, 648, 718, 1185
BstDSI CCRYGG 2 cut(s) 1092, 1101
BstF5I GGATG 2 cut(s) 308, 863
BstFNI CGCG 1 cut(s) 1077
BstKTI GATC 2 cut(s) 106, 275
BstMAI GTCTC 2 cut(s) 1003, 1123
BstMBI GATC 2 cut(s) 103, 272
BstMWI GCNNNNNNNGC 6 cut(s) 199, 508, 729, 732, 763, 783
BstNI CCWGG 3 cut(s) 168, 628, 1059
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 8 cut(s) 166, 202, 534, 535, 626, 659, 1057, 1153
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 166
BstUI CGCG 1 cut(s) 1077
BstV1I GCAGC 9 cut(s) 32, 105, 135, 735, 744, 747, 997, 1033, 1036
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BstZ17I GTATAC 1 cut(s) 598
Bsu36I CCTNAGG 2 cut(s) 378, 718
BsuRI GGCC 2 cut(s) 632, 1062
BtgI CCRYGG 2 cut(s) 1092, 1101
BtsCI GGATG 2 cut(s) 308, 863
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 4 cut(s) 274, 425, 1023, 1093
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 416, 634
Cfr10I RCCGGY 2 cut(s) 495, 632
Cfr13I GGNCC 7 cut(s) 111, 209, 239, 313, 630, 714, 1061
Cfr9I CCCGGG 1 cut(s) 535
CseI GACGC 1 cut(s) 991
Csp6I GTAC 2 cut(s) 321, 564
CspCI CAANNNNNGTGG 2 cut(s) 1111, 1146
CviAII CATG 6 cut(s) 288, 434, 703, 941, 1093, 1102
CviQI GTAC 2 cut(s) 321, 564
DdeI CTNAG 7 cut(s) 67, 276, 317, 378, 648, 718, 1185
DpnI GATC 2 cut(s) 105, 274
DpnII GATC 2 cut(s) 103, 272
DraIII CACNNNGTG 1 cut(s) 1018
Eam1104I CTCTTC 2 cut(s) 773, 969
EarI CTCTTC 2 cut(s) 773, 969
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 4 cut(s) 559, 709, 1092, 1101
Eco24I GRGCYC 2 cut(s) 183, 1101
Eco31I GGTCTC 1 cut(s) 1123
Eco47I GGWCC 5 cut(s) 111, 209, 239, 313, 714
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 2 cut(s) 378, 718
Eco88I CYCGRG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 3 cut(s) 111, 714, 1061
EcoRII CCWGG 3 cut(s) 166, 626, 1057
EcoT14I CCWWGG 4 cut(s) 559, 709, 1092, 1101
EcoT38I GRGCYC 2 cut(s) 183, 1101
ErhI CCWWGG 4 cut(s) 559, 709, 1092, 1101
FaeI CATG 6 cut(s) 291, 437, 706, 944, 1096, 1105
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 1 cut(s) 907
FatI CATG 6 cut(s) 287, 433, 702, 940, 1092, 1101
FblI GTMKAC 2 cut(s) 597, 1072
FokI GGATG 2 cut(s) 315, 850
FriOI GRGCYC 2 cut(s) 183, 1101
FspBI CTAG 5 cut(s) 44, 90, 585, 729, 879
HaeIII GGCC 2 cut(s) 632, 1062
HapII CCGG 7 cut(s) 203, 440, 496, 536, 633, 660, 1155
HgaI GACGC 1 cut(s) 991
Hin1II CATG 6 cut(s) 291, 437, 706, 944, 1096, 1105
HincII GTYRAC 1 cut(s) 927
HindII GTYRAC 1 cut(s) 927
HindIII AAGCTT 2 cut(s) 146, 541
HinfI GANTC 6 cut(s) 71, 373, 656, 944, 1106, 1198
HpaI GTTAAC 1 cut(s) 927
HpaII CCGG 7 cut(s) 203, 440, 496, 536, 633, 660, 1155
HphI GGTGA 2 cut(s) 966, 1145
Hpy166II GTNNAC 4 cut(s) 590, 598, 927, 1073
Hpy188I TCNGA 8 cut(s) 213, 279, 313, 871, 949, 997, 1044, 1177
Hpy188III TCNNGA 5 cut(s) 237, 255, 440, 482, 772
Hpy8I GTNNAC 4 cut(s) 590, 598, 927, 1073
HpyAV CCTTC 5 cut(s) 124, 190, 243, 498, 857
HpyCH4III ACNGT 7 cut(s) 79, 269, 395, 953, 1018, 1070, 1088
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 5 cut(s) 306, 471, 1021, 1048, 1139
HpyF10VI GCNNNNNNNGC 6 cut(s) 199, 508, 729, 732, 763, 783
HpyF3I CTNAG 7 cut(s) 67, 276, 317, 378, 648, 718, 1185
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 6 cut(s) 291, 437, 706, 944, 1096, 1105
Kpn2I TCCGGA 1 cut(s) 439
KpnI GGTACC 1 cut(s) 567
KroI GCCGGC 1 cut(s) 632
KroNI GCCGGC 1 cut(s) 634
KspAI GTTAAC 1 cut(s) 927
Kzo9I GATC 2 cut(s) 103, 272
LguI GCTCTTC 1 cut(s) 773
LmnI GCTCC 3 cut(s) 199, 442, 1096
Lsp1109I GCAGC 9 cut(s) 32, 105, 135, 735, 744, 747, 997, 1033, 1036
LweI GCATC 3 cut(s) 293, 1035, 1126
MaeI CTAG 5 cut(s) 44, 90, 585, 729, 879
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 4 cut(s) 382, 395, 740, 917
MalI GATC 2 cut(s) 105, 274
MbiI CCGCTC 1 cut(s) 260
MboI GATC 2 cut(s) 103, 272
MboII GAAGA 2 cut(s) 760, 956
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 4 cut(s) 166, 183, 958, 1101
MluCI AATT 4 cut(s) 307, 446, 553, 569
MlyI GAGTC 2 cut(s) 65, 367
MmeI TCCRAC 1 cut(s) 700
MroI TCCGGA 1 cut(s) 439
MroNI GCCGGC 1 cut(s) 632
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 4 cut(s) 245, 390, 926, 1169
MspA1I CMGCKG 1 cut(s) 738
MspI CCGG 7 cut(s) 203, 440, 496, 536, 633, 660, 1155
MspR9I CCNGG 8 cut(s) 168, 204, 536, 537, 628, 661, 1059, 1155
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 3 cut(s) 168, 628, 1059
MvnI CGCG 1 cut(s) 1077
MwoI GCNNNNNNNGC 6 cut(s) 199, 508, 729, 732, 763, 783
NaeI GCCGGC 1 cut(s) 634
NciI CCSGG 5 cut(s) 204, 536, 537, 661, 1155
NcoI CCATGG 2 cut(s) 1092, 1101
NdeII GATC 2 cut(s) 103, 272
NgoMIV GCCGGC 1 cut(s) 632
NlaIII CATG 6 cut(s) 291, 437, 706, 944, 1096, 1105
NlaIV GGNNCC 8 cut(s) 55, 163, 201, 431, 565, 715, 1063, 1098
NmuCI GTSAC 2 cut(s) 382, 917
NspI RCATGY 1 cut(s) 706
PasI CCCWGGG 1 cut(s) 167
PciI ACATGT 1 cut(s) 702
PciSI GCTCTTC 1 cut(s) 773
PdiI GCCGGC 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 4 cut(s) 656, 944, 1106, 1198
PleI GAGTC 2 cut(s) 65, 367
PpsI GAGTC 2 cut(s) 65, 367
PpuMI RGGWCCY 2 cut(s) 111, 714
PscI ACATGT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 2 cut(s) 111, 714
Psp6I CCWGG 3 cut(s) 166, 626, 1057
PspGI CCWGG 3 cut(s) 166, 626, 1057
PspN4I GGNNCC 8 cut(s) 55, 163, 201, 431, 565, 715, 1063, 1098
PspPI GGNCC 7 cut(s) 111, 209, 239, 313, 630, 714, 1061
PspPPI RGGWCCY 2 cut(s) 111, 714
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 2 cut(s) 322, 565
RsaNI GTAC 2 cut(s) 321, 564
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 773
SaqAI TTAA 4 cut(s) 245, 390, 926, 1169
Sau3AI GATC 2 cut(s) 103, 272
Sau96I GGNCC 7 cut(s) 111, 209, 239, 313, 630, 714, 1061
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 2 cut(s) 65, 367
ScrFI CCNGG 8 cut(s) 168, 204, 536, 537, 628, 661, 1059, 1155
SduI GDGCHC 4 cut(s) 166, 183, 958, 1101
SfaNI GCATC 3 cut(s) 293, 1035, 1126
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 5 cut(s) 111, 209, 239, 313, 714
SmaI CCCGGG 1 cut(s) 537
Sse9I AATT 4 cut(s) 307, 446, 553, 569
SsiI CCGC 5 cut(s) 260, 343, 499, 738, 1077
SspMI CTAG 5 cut(s) 44, 90, 585, 729, 879
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 8 cut(s) 166, 202, 534, 535, 626, 659, 1057, 1153
StyI CCWWGG 4 cut(s) 559, 709, 1092, 1101
TaaI ACNGT 7 cut(s) 79, 269, 395, 953, 1018, 1070, 1088
TaiI ACGT 1 cut(s) 481
TaqI TCGA 1 cut(s) 14
TasI AATT 4 cut(s) 307, 446, 553, 569
TatI WGTACW 1 cut(s) 320
TauI GCSGC 3 cut(s) 263, 346, 502
TfiI GAWTC 4 cut(s) 656, 944, 1106, 1198
Tru1I TTAA 4 cut(s) 245, 390, 926, 1169
Tru9I TTAA 4 cut(s) 245, 390, 926, 1169
TscAI CASTG 4 cut(s) 274, 425, 1023, 1093
TseFI GTSAC 2 cut(s) 382, 917
TseI GCWGC 9 cut(s) 20, 93, 123, 723, 732, 735, 985, 1021, 1024
Tsp45I GTSAC 2 cut(s) 382, 917
TspDTI ATGAA 4 cut(s) 276, 656, 852, 1223
TspMI CCCGGG 1 cut(s) 535
TspRI CASTG 4 cut(s) 274, 425, 1023, 1093
VpaK11BI GGWCC 5 cut(s) 111, 209, 239, 313, 714
XapI RAATTY 1 cut(s) 446
XceI RCATGY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 1099
XmaI CCCGGG 1 cut(s) 535
XmiI GTMKAC 2 cut(s) 597, 1072
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 5 cut(s) 44, 90, 585, 729, 879
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.