MD06G1138800.v1.1

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
28370179 .. 28373439
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1138800.v1.1.491

Sequence Viewer

Length: 1248 bp
ATGGACTGGAACTTGAAAGCAGCTTCTTGGGATTTGCCTGAACTAGAACAAGGAACCTTTTCTAACTTAGACACTATAGTTGATGGGTCTAGCAGCTTTGGAGATCATAGGACTTTCAAAGGCAGCAACTTTTCGGTTGATTTGAAGCTTGGTCAGTTGGGTGGCTCTGGGAATAATGAGCTGGTGGGTATGCTGAAGGAGCCAGGTGGTCTGAAAACTACCTCATCATCTCCTTCTGGACCATTAAAGAGGTCTAGAGCGGCTTACAGTGGATCTCAGATGGTTTCATGCCTCGTTGATGGATGCAATTCGGACCTTAGTACTTGTAGGGATTACCATCGGCGGCATAAGGTCTGTGAGCTACATTCAAAGACTCCTCAGGTCACTATTAACGGTAACAAGCAACGATTTTGCCAGCAGTGTAGCAGGTTCCATGCTCCGGAGGAATTTGATGAGGGAAAGAGAAGTTGCAGGAAACGTCTTGATGGACACAACCGGCGGCGAAGGAAGCCTCAACCAGAACCCTTGTCACGCCCGGGAAGTTTTCTGTCCAGTTACCAAGGTACACAATTGTTACCATTCTCTAGTTCACTTGTATACCCCTCCACCAATGTCATAAACCCTACCTGGGCCACCGGCATTGTCAAAACTGAGCCAGATCCCGGAGTTCATAACCTCCAACTGCCATTGATCGATAAGCAAAACATGTTCCTTGGGTCCTCAGTCAGCACTAGCAGCAGCGGTTACAAGGGAGGAAAGCAGTTCTCACTCTTCCAGAGCAGCAACAGCTCTCCACTCCACCACAACCACCAAACATCTCATCATCATGGCACTTCTGTCTGCCAACCCCTTCTCAACACCATTTCATTCTCCGAAACTGCTAGTGGTGGTGGTGGGACAACAAAGAGCAAGATGTTTTGTGACCGGTTAACAACTCAAATCCATGATTCGGACTGTGCTCTCTCTCTTCTGTCATCACCGCAGACGCAGCAGACATCTGAAATAGGTTTGAGACACACAGTGCAGCAGCCTAATTCAATCTCTCTGATGCAACAACGACTAGGCCCCAACGGTCTACGCAGAAACAACAGTTCCATGGAGCCCATGGATTCAGTTATGGTCTCCAATGGAAGTGGTGATGCAAATGTCCATTGCCCTGGAATGTTTCGGTTAATCTCTGATGGTTCTCAGGGCAATGGGAATCAACACCATCAATCCCCTCAAACACTTCCTTTTCATTGGCAGTAG

Protein Analysis

416

Amino Acids

45.4

Weight (kDa)

8.94

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 97 - 170 3.7e-30 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 2 cut(s) 597, 1075
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 5 cut(s) 260, 343, 499, 741, 980
AclWI GGATC 2 cut(s) 280, 653
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 1021
AfaI GTAC 2 cut(s) 322, 565
AfiI CCNNNNNNNGG 4 cut(s) 439, 628, 662, 949
AflIII ACRYGT 1 cut(s) 705
AgeI ACCGGT 1 cut(s) 924
AgsI TTSAA 5 cut(s) 16, 118, 145, 369, 1038
AjnI CCWGG 3 cut(s) 202, 626, 1156
AluBI AGCT 6 cut(s) 23, 96, 148, 181, 361, 789
AluI AGCT 6 cut(s) 23, 96, 148, 181, 361, 789
Alw21I GWGCWC 1 cut(s) 961
Alw26I GTCTC 2 cut(s) 1006, 1126
AlwI GGATC 2 cut(s) 280, 653
Ama87I CYCGRG 1 cut(s) 535
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 2 cut(s) 630, 1063
ApeKI GCWGC 9 cut(s) 20, 93, 123, 735, 738, 780, 988, 1024, 1027
ApoI RAATTY 1 cut(s) 446
AsiGI ACCGGT 1 cut(s) 924
Asp700I GAANNNNTTC 1 cut(s) 58
AspS9I GGNCC 5 cut(s) 239, 313, 630, 717, 1064
AsuC2I CCSGG 3 cut(s) 536, 537, 663
AsuHPI GGTGA 2 cut(s) 969, 1148
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 3 cut(s) 239, 313, 717
AxyI CCTNAGG 1 cut(s) 378
BanII GRGCYC 1 cut(s) 1104
Bbv12I GWGCWC 1 cut(s) 961
BbvI GCAGC 9 cut(s) 32, 105, 135, 747, 750, 792, 1000, 1036, 1039
BccI CCATC 7 cut(s) 77, 274, 293, 345, 479, 1175, 1218
BciT130I CCWGG 3 cut(s) 204, 628, 1158
BcnI CCSGG 3 cut(s) 536, 537, 663
BcoDI GTCTC 2 cut(s) 1006, 1126
BfaI CTAG 7 cut(s) 44, 90, 255, 585, 732, 882, 1061
BfmI CTRYAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 6 cut(s) 204, 536, 537, 628, 663, 1158
Bme18I GGWCC 3 cut(s) 239, 313, 717
BmeT110I CYCGRG 1 cut(s) 535
BmgT120I GGNCC 5 cut(s) 239, 313, 630, 717, 1064
BmiI GGNNCC 6 cut(s) 55, 201, 431, 718, 1066, 1101
BmrFI CCNGG 6 cut(s) 204, 536, 537, 628, 663, 1158
BmsI GCATC 3 cut(s) 293, 1038, 1129
BpuMI CCSGG 3 cut(s) 536, 537, 663
Bsa29I ATCGAT 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 1126
BsaJI CCNNGG 7 cut(s) 535, 559, 627, 712, 1095, 1104, 1156
BsaWI WCCGGW 2 cut(s) 439, 924
Bsc4I CCNNNNNNNGG 4 cut(s) 439, 628, 662, 949
Bse118I RCCGGY 3 cut(s) 495, 635, 924
Bse1I ACTGG 2 cut(s) 11, 552
Bse21I CCTNAGG 1 cut(s) 378
Bse3DI GCAATG 2 cut(s) 1150, 1201
Bse8I GATNNNNATC 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 3 cut(s) 204, 628, 1158
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 7 cut(s) 535, 559, 627, 712, 1095, 1104, 1156
BseGI GGATG 1 cut(s) 308
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 4 cut(s) 439, 628, 662, 949
BseMI GCAATG 2 cut(s) 1150, 1201
BseMII CTCAG 5 cut(s) 290, 392, 642, 735, 1202
BseNI ACTGG 2 cut(s) 11, 552
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 9 cut(s) 32, 105, 135, 747, 750, 792, 1000, 1036, 1039
BsgI GTGCAG 1 cut(s) 1043
BshFI GGCC 2 cut(s) 632, 1065
BshTI ACCGGT 1 cut(s) 924
BshVI ATCGAT 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 961
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 6 cut(s) 440, 496, 536, 636, 663, 925
BslFI GGGAC 1 cut(s) 910
BslI CCNNNNNNNGG 4 cut(s) 439, 628, 662, 949
BsmAI GTCTC 2 cut(s) 1006, 1126
BsmFI GGGAC 1 cut(s) 910
BsnI GGCC 2 cut(s) 632, 1065
Bso31I GGTCTC 1 cut(s) 1126
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 961, 1104
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 4 cut(s) 103, 272, 658, 690
Bsp19I CCATGG 2 cut(s) 1095, 1104
BspACI CCGC 5 cut(s) 260, 343, 499, 741, 980
BspANI GGCC 2 cut(s) 632, 1065
BspCNI CTCAG 5 cut(s) 289, 391, 643, 734, 1201
BspDI ATCGAT 1 cut(s) 693
BspEI TCCGGA 1 cut(s) 439
BspLI GGNNCC 6 cut(s) 55, 201, 431, 718, 1066, 1101
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 280, 653
BspTNI GGTCTC 1 cut(s) 1126
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 1150, 1201
BsrFI RCCGGY 3 cut(s) 495, 635, 924
BsrI ACTGG 2 cut(s) 11, 552
BssAI RCCGGY 3 cut(s) 495, 635, 924
BssECI CCNNGG 7 cut(s) 535, 559, 627, 712, 1095, 1104, 1156
BssMI GATC 4 cut(s) 103, 272, 658, 690
BssNAI GTATAC 1 cut(s) 598
BssT1I CCWWGG 4 cut(s) 559, 712, 1095, 1104
Bst1107I GTATAC 1 cut(s) 598
Bst2UI CCWGG 3 cut(s) 204, 628, 1158
Bst4CI ACNGT 6 cut(s) 269, 395, 956, 1021, 1073, 1091
Bst6I CTCTTC 2 cut(s) 776, 972
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 7 cut(s) 67, 276, 317, 378, 651, 721, 1188
BstDSI CCRYGG 2 cut(s) 1095, 1104
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 4 cut(s) 106, 275, 661, 693
BstMAI GTCTC 2 cut(s) 1006, 1126
BstMBI GATC 4 cut(s) 103, 272, 658, 690
BstMWI GCNNNNNNNGC 5 cut(s) 199, 508, 735, 786, 988
BstNI CCWGG 3 cut(s) 204, 628, 1158
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 6 cut(s) 202, 534, 535, 626, 661, 1156
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 9 cut(s) 32, 105, 135, 747, 750, 792, 1000, 1036, 1039
BstX2I RGATCY 2 cut(s) 272, 658
BstXI CCANNNNNNTGG 1 cut(s) 1157
BstYI RGATCY 2 cut(s) 272, 658
BstZ17I GTATAC 1 cut(s) 598
Bsu15I ATCGAT 1 cut(s) 693
Bsu36I CCTNAGG 1 cut(s) 378
BsuRI GGCC 2 cut(s) 632, 1065
BsuTUI ATCGAT 1 cut(s) 693
BtgI CCRYGG 2 cut(s) 1095, 1104
BtsCI GGATG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 3 cut(s) 274, 425, 1026
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 416
Cfr10I RCCGGY 3 cut(s) 495, 635, 924
Cfr13I GGNCC 5 cut(s) 239, 313, 630, 717, 1064
Cfr9I CCCGGG 1 cut(s) 535
ClaI ATCGAT 1 cut(s) 693
CseI GACGC 1 cut(s) 994
Csp6I GTAC 2 cut(s) 321, 564
CspAI ACCGGT 1 cut(s) 924
CspCI CAANNNNNGTGG 4 cut(s) 622, 657, 1114, 1149
CviAII CATG 7 cut(s) 288, 434, 706, 827, 944, 1096, 1105
CviQI GTAC 2 cut(s) 321, 564
DdeI CTNAG 7 cut(s) 67, 276, 317, 378, 651, 721, 1188
DpnI GATC 4 cut(s) 105, 274, 660, 692
DpnII GATC 4 cut(s) 103, 272, 658, 690
DraIII CACNNNGTG 1 cut(s) 1021
Eam1104I CTCTTC 2 cut(s) 776, 972
EarI CTCTTC 2 cut(s) 776, 972
Eco130I CCWWGG 4 cut(s) 559, 712, 1095, 1104
Eco24I GRGCYC 1 cut(s) 1104
Eco31I GGTCTC 1 cut(s) 1126
Eco47I GGWCC 3 cut(s) 239, 313, 717
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 535
EcoO109I RGGNCCY 2 cut(s) 717, 1064
EcoRII CCWGG 3 cut(s) 202, 626, 1156
EcoT14I CCWWGG 4 cut(s) 559, 712, 1095, 1104
EcoT38I GRGCYC 1 cut(s) 1104
ErhI CCWWGG 4 cut(s) 559, 712, 1095, 1104
FaeI CATG 7 cut(s) 291, 437, 709, 830, 947, 1099, 1108
FaqI GGGAC 1 cut(s) 910
FatI CATG 7 cut(s) 287, 433, 705, 826, 943, 1095, 1104
FblI GTMKAC 2 cut(s) 597, 1075
FokI GGATG 1 cut(s) 315
FriOI GRGCYC 1 cut(s) 1104
FspBI CTAG 7 cut(s) 44, 90, 255, 585, 732, 882, 1061
HaeIII GGCC 2 cut(s) 632, 1065
HapII CCGG 6 cut(s) 440, 496, 536, 636, 663, 925
HgaI GACGC 1 cut(s) 994
Hin1II CATG 7 cut(s) 291, 437, 709, 830, 947, 1099, 1108
HincII GTYRAC 1 cut(s) 930
HindII GTYRAC 1 cut(s) 930
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 4 cut(s) 373, 947, 1109, 1201
HpaI GTTAAC 1 cut(s) 930
HpaII CCGG 6 cut(s) 440, 496, 536, 636, 663, 925
HphI GGTGA 2 cut(s) 969, 1148
Hpy166II GTNNAC 5 cut(s) 566, 590, 598, 930, 1076
Hpy188I TCNGA 8 cut(s) 213, 279, 313, 874, 952, 1000, 1047, 1180
Hpy188III TCNNGA 5 cut(s) 237, 255, 440, 482, 775
Hpy8I GTNNAC 5 cut(s) 566, 590, 598, 930, 1076
HpyAV CCTTC 4 cut(s) 190, 243, 498, 860
HpyCH4III ACNGT 6 cut(s) 269, 395, 956, 1021, 1073, 1091
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 5 cut(s) 306, 471, 1024, 1051, 1142
HpyF10VI GCNNNNNNNGC 5 cut(s) 199, 508, 735, 786, 988
HpyF3I CTNAG 7 cut(s) 67, 276, 317, 378, 651, 721, 1188
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 7 cut(s) 291, 437, 709, 830, 947, 1099, 1108
Kpn2I TCCGGA 1 cut(s) 439
KspAI GTTAAC 1 cut(s) 930
Kzo9I GATC 4 cut(s) 103, 272, 658, 690
LmnI GCTCC 3 cut(s) 199, 442, 1099
Lsp1109I GCAGC 9 cut(s) 32, 105, 135, 747, 750, 792, 1000, 1036, 1039
LweI GCATC 3 cut(s) 293, 1038, 1129
MaeI CTAG 7 cut(s) 44, 90, 255, 585, 732, 882, 1061
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 7 cut(s) 382, 395, 528, 554, 573, 743, 920
MalI GATC 4 cut(s) 105, 274, 660, 692
MbiI CCGCTC 1 cut(s) 260
MboI GATC 4 cut(s) 103, 272, 658, 690
MboII GAAGA 2 cut(s) 763, 959
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 2 cut(s) 272, 658
MhlI GDGCHC 2 cut(s) 961, 1104
MluCI AATT 4 cut(s) 307, 446, 569, 1033
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 703
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 4 cut(s) 245, 390, 929, 1172
MslI CAYNNNNRTG 1 cut(s) 825
MspA1I CMGCKG 1 cut(s) 741
MspI CCGG 6 cut(s) 440, 496, 536, 636, 663, 925
MspR9I CCNGG 6 cut(s) 204, 536, 537, 628, 663, 1158
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 3 cut(s) 204, 628, 1158
MwoI GCNNNNNNNGC 5 cut(s) 199, 508, 735, 786, 988
NciI CCSGG 3 cut(s) 536, 537, 663
NcoI CCATGG 2 cut(s) 1095, 1104
NdeII GATC 4 cut(s) 103, 272, 658, 690
NlaIII CATG 7 cut(s) 291, 437, 709, 830, 947, 1099, 1108
NlaIV GGNNCC 6 cut(s) 55, 201, 431, 718, 1066, 1101
NmuCI GTSAC 3 cut(s) 382, 528, 920
NspI RCATGY 1 cut(s) 709
PciI ACATGT 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 3 cut(s) 947, 1109, 1201
PfoI TCCNGGA 1 cut(s) 661
PinAI ACCGGT 1 cut(s) 924
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PpuMI RGGWCCY 1 cut(s) 717
PscI ACATGT 1 cut(s) 705
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 3 cut(s) 202, 626, 1156
PspGI CCWGG 3 cut(s) 202, 626, 1156
PspN4I GGNNCC 6 cut(s) 55, 201, 431, 718, 1066, 1101
PspPI GGNCC 5 cut(s) 239, 313, 630, 717, 1064
PspPPI RGGWCCY 1 cut(s) 717
PsuI RGATCY 2 cut(s) 272, 658
RsaI GTAC 2 cut(s) 322, 565
RsaNI GTAC 2 cut(s) 321, 564
RseI CAYNNNNRTG 1 cut(s) 825
SaqAI TTAA 4 cut(s) 245, 390, 929, 1172
Sau3AI GATC 4 cut(s) 103, 272, 658, 690
Sau96I GGNCC 5 cut(s) 239, 313, 630, 717, 1064
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 6 cut(s) 204, 536, 537, 628, 663, 1158
SduI GDGCHC 2 cut(s) 961, 1104
SfaNI GCATC 3 cut(s) 293, 1038, 1129
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 3 cut(s) 239, 313, 717
SmaI CCCGGG 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 825
Sse9I AATT 4 cut(s) 307, 446, 569, 1033
SsiI CCGC 5 cut(s) 260, 343, 499, 741, 980
SspMI CTAG 7 cut(s) 44, 90, 255, 585, 732, 882, 1061
StyD4I CCNGG 6 cut(s) 202, 534, 535, 626, 661, 1156
StyI CCWWGG 4 cut(s) 559, 712, 1095, 1104
TaaI ACNGT 6 cut(s) 269, 395, 956, 1021, 1073, 1091
TaiI ACGT 1 cut(s) 481
TaqI TCGA 1 cut(s) 693
TasI AATT 4 cut(s) 307, 446, 569, 1033
TatI WGTACW 1 cut(s) 320
TauI GCSGC 3 cut(s) 263, 346, 502
TfiI GAWTC 3 cut(s) 947, 1109, 1201
Tru1I TTAA 4 cut(s) 245, 390, 929, 1172
Tru9I TTAA 4 cut(s) 245, 390, 929, 1172
TscAI CASTG 3 cut(s) 274, 425, 1026
TseFI GTSAC 3 cut(s) 382, 528, 920
TseI GCWGC 9 cut(s) 20, 93, 123, 735, 738, 780, 988, 1024, 1027
Tsp45I GTSAC 3 cut(s) 382, 528, 920
TspDTI ATGAA 4 cut(s) 276, 659, 855, 1226
TspMI CCCGGG 1 cut(s) 535
TspRI CASTG 3 cut(s) 274, 425, 1026
VpaK11BI GGWCC 3 cut(s) 239, 313, 717
XapI RAATTY 1 cut(s) 446
XbaI TCTAGA 1 cut(s) 254
XceI RCATGY 1 cut(s) 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 1102
XmaI CCCGGG 1 cut(s) 535
XmiI GTMKAC 2 cut(s) 597, 1075
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 7 cut(s) 44, 90, 255, 585, 732, 882, 1061
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.