Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006574

Physical Location & Seq

Genomic Coordinates Forward (+)

24935450 .. 24937146

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1154900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGACTGGAACTTGAAAGCAGCTTCTTGGGATTTGTCTGAACTAGAACAAGAAACCTTTTCCAACATGGACACTACAGTAGATGGGTCTAGCAGCCTTGGAGATCATAGGGCCTTGAAAGGAAGCAACTTTTCTGTTGATTTGAAGCTTGGTCAGTTGGGTGGCTATGGGAATAATGAGGTGGTGGATATGCTGAAGGAGCCCGTTCCGAGAACTACCTCATCATCTTCGTCTGTACCATCAAAGAGGTCTAGAGCGGCTTACAGCGGATCTCAGATGGTTTCCTGCCTCGTTGATGGATGCAACTGTGACCTTAGTACTTGTAGGGATTACCATCGGCGGCATAAGGTCTGTGAGTTACATTCTAAGACTCCTCAGGTCACGATTAACGGAAACAAGCAGCGATTTTGCCAGCAGTGTAGCAGGTTCCATGCTCTGGAGGAATTTGATCAGGGAAAGAGAAGCTGTAGGAAACGTCTTGATGGACACAACCGGCGGCGAAGGAAGCCTCAGCCAGAACCCTTGTCGCATCCGGGGAGTTTTATGTCCAGTTACCAAGGTGAGCTGCAACCTTTCTTTGTGGAGAGCACTTTGTCGAAATTAAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

204

Amino Acids

22.89

Weight (kDa)

8.94

Isoelectric Point (pI)

62.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	96 - 169	2.1e-31	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50570 AT5G50570 AT5G50670 AT5G50670
fragaria_vesca	FvH4_5g08580 FvH4_5g08580 FvH4_5g08580
malus_domestica	MD06G1138800.v1.1 MD14G1154900.v1.1
prunus_persica	Prupe.5G149000_v2.0.a1 Prupe.5G149000_v2.0.a1 Prupe.5G149000_v2.0.a1
pyrus_communis	pycom06g12990 pycom14g12880
rosa_chinensis	RchiOBHm_Chr7g0189811
rosa_laevigata	RLG00000004586
rosa_multiflora	Rmu_sc0000512.1_g000006
rosa_roxburghii	Rroxscaffold_3G00265140
rosa_rugosa	Rorug06G0500100 Rorug06G0500100 Rorug06G0500100
rosa_samantha	Rh7AG105300 Rh7BG108100 Rh7CG110100 Rh7DG108300
rosa_wichuraiana	Rw7G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	414
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	257
AciI	CCGC	4 cut(s)	257, 267, 340, 496
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	237, 319
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	16, 118, 145
AluBI	AGCT	4 cut(s)	23, 148, 465, 565
AluI	AGCT	4 cut(s)	23, 148, 465, 565
Alw21I	GWGCWC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	4 cut(s)	20, 93, 400, 565
ApoI	RAATTY	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	590
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	4 cut(s)	32, 105, 412, 552
BccI	CCATC	6 cut(s)	77, 247, 271, 290, 342, 476
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	534
BfaI	CTAG	3 cut(s)	44, 90, 252
BfmI	CTRYAG	2 cut(s)	75, 466
BfuAI	ACCTGC	1 cut(s)	414
BisI	GCNGC	7 cut(s)	21, 94, 258, 341, 401, 497, 566
BlsI	GCNGC	7 cut(s)	22, 95, 259, 342, 402, 498, 567
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	201, 428
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	2 cut(s)	290, 538
BpmI	CTGGAG	1 cut(s)	458
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	97, 533, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse118I	RCCGGY	1 cut(s)	492
Bse1I	ACTGG	2 cut(s)	11, 549
Bse21I	CCTNAGG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	97, 533, 556
BseGI	GGATG	2 cut(s)	305, 529
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	3 cut(s)	287, 389, 524
BseNI	ACTGG	2 cut(s)	11, 549
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	4 cut(s)	32, 105, 412, 552
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	493, 533
BslI	CCNNNNNNNGG	1 cut(s)	436
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	204, 590
Bsp143I	GATC	3 cut(s)	103, 269, 448
BspACI	CCGC	4 cut(s)	257, 267, 340, 496
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	3 cut(s)	286, 388, 523
BspLI	GGNNCC	2 cut(s)	201, 428
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	11, 549
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	3 cut(s)	97, 533, 556
BssMI	GATC	3 cut(s)	103, 269, 448
BssT1I	CCWWGG	2 cut(s)	97, 556
Bst4CI	ACNGT	2 cut(s)	79, 308
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	5 cut(s)	273, 314, 366, 375, 510
BstF5I	GGATG	2 cut(s)	305, 529
BstKTI	GATC	3 cut(s)	106, 272, 451
BstMBI	GATC	3 cut(s)	103, 269, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 505
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	2 cut(s)	75, 466
BstV1I	GCAGC	4 cut(s)	32, 105, 412, 552
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	305, 529
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	236, 318
CviAII	CATG	2 cut(s)	67, 431
CviQI	GTAC	2 cut(s)	236, 318
DdeI	CTNAG	5 cut(s)	273, 314, 366, 375, 510
DpnI	GATC	3 cut(s)	105, 271, 450
DpnII	GATC	3 cut(s)	103, 269, 448
Eco130I	CCWWGG	2 cut(s)	97, 556
Eco24I	GRGCYC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	111
EcoT14I	CCWWGG	2 cut(s)	97, 556
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	2 cut(s)	97, 556
FaeI	CATG	2 cut(s)	70, 434
FaiI	YATR	7 cut(s)	68, 108, 168, 191, 345, 432, 545
FatI	CATG	2 cut(s)	66, 430
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	7 cut(s)	21, 94, 258, 341, 401, 497, 566
FokI	GGATG	2 cut(s)	312, 516
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	7 cut(s)	21, 94, 258, 341, 401, 497, 566
FspBI	CTAG	3 cut(s)	44, 90, 252
GluI	GCNGC	7 cut(s)	21, 94, 258, 341, 401, 497, 566
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	493, 533
Hin1II	CATG	2 cut(s)	70, 434
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	2 cut(s)	493, 533
HphI	GGTGA	1 cut(s)	572
Hpy188I	TCNGA	3 cut(s)	40, 210, 276
Hpy188III	TCNNGA	4 cut(s)	252, 382, 437, 479
HpyAV	CCTTC	2 cut(s)	190, 495
HpyCH4III	ACNGT	2 cut(s)	79, 308
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	2 cut(s)	303, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 505
HpyF3I	CTNAG	5 cut(s)	273, 314, 366, 375, 510
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	2 cut(s)	70, 434
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	103, 269, 448
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	4 cut(s)	32, 105, 412, 552
LweI	GCATC	2 cut(s)	290, 538
MaeI	CTAG	3 cut(s)	44, 90, 252
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	4 cut(s)	308, 357, 379, 551
MalI	GATC	3 cut(s)	105, 271, 450
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	3 cut(s)	103, 269, 448
MboII	GAAGA	1 cut(s)	219
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	2 cut(s)	204, 590
MluCI	AATT	2 cut(s)	443, 599
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	172, 229, 240, 299, 384, 433, 519
MseI	TTAA	2 cut(s)	387, 602
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	493, 533
MspR9I	CCNGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	199, 505
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	103, 269, 448
NlaIII	CATG	2 cut(s)	70, 434
NlaIV	GGNNCC	2 cut(s)	201, 428
NmuCI	GTSAC	2 cut(s)	308, 379
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	7 cut(s)	22, 95, 259, 342, 402, 498, 567
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	201, 428
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	2 cut(s)	237, 319
RsaNI	GTAC	2 cut(s)	236, 318
SaqAI	TTAA	2 cut(s)	387, 602
SatI	GCNGC	7 cut(s)	21, 94, 258, 341, 401, 497, 566
Sau3AI	GATC	3 cut(s)	103, 269, 448
Sau96I	GGNCC	1 cut(s)	111
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	2 cut(s)	204, 590
SfaNI	GCATC	2 cut(s)	290, 538
SfcI	CTRYAG	2 cut(s)	75, 466
Sse9I	AATT	2 cut(s)	443, 599
SsiI	CCGC	4 cut(s)	257, 267, 340, 496
SspMI	CTAG	3 cut(s)	44, 90, 252
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	97, 556
TaaI	ACNGT	2 cut(s)	79, 308
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	596
TasI	AATT	2 cut(s)	443, 599
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	3 cut(s)	260, 343, 499
Tru1I	TTAA	2 cut(s)	387, 602
Tru9I	TTAA	2 cut(s)	387, 602
TscAI	CASTG	1 cut(s)	422
TseFI	GTSAC	2 cut(s)	308, 379
TseI	GCWGC	4 cut(s)	20, 93, 400, 565
Tsp45I	GTSAC	2 cut(s)	308, 379
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	422
Van91I	CCANNNNNTGG	1 cut(s)	436
XapI	RAATTY	1 cut(s)	443
XbaI	TCTAGA	1 cut(s)	251
XspI	CTAG	3 cut(s)	44, 90, 252
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.