Rmu_sc0000512.1_g000006

Squamosa promoter-binding-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000512.1
Physical Location & Seq
Forward (+)
21717 .. 25548
3832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000512.1_g000006.1.cds

Sequence Viewer

Length: 1695 bp
atggactggaacttgaaagcaccatcttcgtgggatttgagtgaacttgagcaagaaaccttttccaacttagacacggttaatgggtctagtagccttggagatcaacatagggccatcaaaggggacttttctgttgatttgaagcttggtcagttgagtaattcaggtaataatcagttggtggatatgttgaagcaacatggaggtcccaaaccttcatcgtcatcgccttccggggcttcaaagaggtcaagggcagcttataatggatcccagacagtttcttgccttgttgatgggtgtagatcagaccttagtacttgtagggattaccataggcgccataaggtctgtgagctgcattctaagactccaatggtcacaattaatggtcagaagcaacgattctgccagcaatgcagcaggttccattcactggaggaatttgatgaaggaaagagaagctgcaggaaacgtcttgatggacacaaccgtaggagaaggaagcctcaacccgaacccttgtcgcgttcaggaagcttcttgtccaactaccaaggtacccaattgttgccattctctagctcacttgtatatccctccaccactgttgtgaacccaacctgggctggagttgtcaaagctgaagccgatacggggcttcataaccatcatctacaacaccagaacatgtttatcgggtcctcaaccagcagcagcagctacaataaaggagcagggaacaagcagcaattcgcacttttccaaagtagtaacaacaaccaaactcatggagcttctgtctgccagccccttctgaatagcatttcaatgtcagaaactgctacttctggggctgctgcgtctgaaaagagcaaaatgttttgtgacaggttaacaacaactcgaatccaccccgattcggattgtgctctctctcttctgtcatcaccgcagacgcagcagcagacatctgagatgggtttgagacacatgatgcagcagcctaattcgatatctctcatgcaccaccaccgcctcggccttcatgggaacaacaacagcaacagtatagagccaatggattcagttctggtctcccatggatcaagtgaccatgcacataatgttcatcagtcctcaggaatgttccacatgggatctgatgaggaggaggaggttgctgtcgacggcggatctgaggtcatttcatgctggtctggtgggcgggtgtttctgctggcacagggtttaggatcgcttgagtgtgacgagcttttgggggcgaggttggctgttatgctgcttaattccggtcagttggttccgatctattttgggtcttatggatctgatttgggatggaggtggtatagtgttcctcgctctcatgagggatatgatggggcgatggcagaggcgatccagcttaggcagtcgtgtggcggagactgtggcagttcgggggtggcagttcttggtttgagtcggacttcgatggtcggcggtggtaaggaatgtttgcctggaagattgagggcaggagagatggctggcgatcggagtagggtagacggagctgcagttgggccgagtctaggttgtgacagagacaattttctctttggtcatctagtgggtcgttcctgttctggagttgggtcagcagcgatggcaaaaatgtctagctag

Protein Analysis

564

Amino Acids

60.81

Weight (kDa)

7.33

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 563
AccB1I GGYRCC 2 cut(s) 342, 563
AccB7I CCANNNNNTGG 1 cut(s) 439
AccI GTMKAC 2 cut(s) 1191, 1575
AccII CGCG 1 cut(s) 532
AciI CCGC 6 cut(s) 956, 1039, 1197, 1231, 1449, 1509
AclWI GGATC 8 cut(s) 267, 280, 1117, 1171, 1207, 1267, 1360, 1420
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 343
AfaI GTAC 2 cut(s) 322, 565
AfiI CCNNNNNNNGG 6 cut(s) 123, 439, 628, 660, 925, 1601
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 5 cut(s) 16, 145, 196, 246, 834
AjnI CCWGG 2 cut(s) 626, 1528
AleI CACNNNNGTG 1 cut(s) 614
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 4 cut(s) 985, 1105, 1446, 1608
AlwI GGATC 8 cut(s) 267, 280, 1117, 1171, 1207, 1267, 1360, 1420
AlwNI CAGNNNCTG 1 cut(s) 845
AoxI GGCC 3 cut(s) 114, 1045, 1592
ApoI RAATTY 1 cut(s) 446
AseI ATTAAT 1 cut(s) 390
Asp718I GGTACC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 4 cut(s) 114, 209, 705, 1592
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 945
AvaII GGWCC 2 cut(s) 209, 705
AxyI CCTNAGG 1 cut(s) 1144
BaeI ACNNNNGTAYC 2 cut(s) 547, 580
BamHI GGATCC 1 cut(s) 272
BanI GGYRCC 2 cut(s) 342, 563
Bbv12I GWGCWC 1 cut(s) 937
BceAI ACGGC 1 cut(s) 1210
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BciT130I CCWGG 2 cut(s) 628, 1530
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 4 cut(s) 985, 1105, 1446, 1608
BfaI CTAG 6 cut(s) 90, 585, 1601, 1637, 1689, 1693
BfmI CTRYAG 2 cut(s) 469, 1584
BfoI RGCGCY 1 cut(s) 346
BfuAI ACCTGC 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 3 cut(s) 238, 628, 1530
Bme18I GGWCC 2 cut(s) 209, 705
BmgT120I GGNCC 4 cut(s) 114, 209, 705, 1592
BmiI GGNNCC 7 cut(s) 211, 274, 344, 431, 565, 706, 1329
BmrFI CCNGG 3 cut(s) 238, 628, 1530
BmsI GCATC 1 cut(s) 990
BpmI CTGGAG 3 cut(s) 461, 654, 1677
Bpu10I CCTNAGC 1 cut(s) 1433
BpuEI CTTGAG 2 cut(s) 68, 1286
BpuMI CCSGG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 343
BsaI GGTCTC 1 cut(s) 1105
BsaJI CCNNGG 6 cut(s) 97, 237, 559, 627, 1042, 1105
BsaWI WCCGGW 1 cut(s) 1316
BsaXI ACNNNNNCTCC 4 cut(s) 789, 819, 1572, 1602
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 439, 628, 660, 925, 1601
Bse1I ACTGG 2 cut(s) 11, 444
Bse21I CCTNAGG 1 cut(s) 1144
Bse3DI GCAATG 1 cut(s) 425
BseBI CCWGG 2 cut(s) 628, 1530
BseDI CCNNGG 6 cut(s) 97, 237, 559, 627, 1042, 1105
BseGI GGATG 1 cut(s) 1370
BseLI CCNNNNNNNGG 6 cut(s) 123, 439, 628, 660, 925, 1601
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 3 cut(s) 969, 1158, 1194
BseNI ACTGG 2 cut(s) 11, 444
BseRI GAGGAG 3 cut(s) 1187, 1190, 1193
Bsh1236I CGCG 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 1564
BshFI GGCC 3 cut(s) 116, 1047, 1594
BshNI GGYRCC 2 cut(s) 342, 563
BsiEI CGRYCG 1 cut(s) 1564
BsiHKAI GWGCWC 1 cut(s) 937
BsiSI CCGG 2 cut(s) 237, 1317
BslFI GGGAC 2 cut(s) 140, 195
BslI CCNNNNNNNGG 6 cut(s) 123, 439, 628, 660, 925, 1601
BsmAI GTCTC 4 cut(s) 985, 1105, 1446, 1608
BsmFI GGGAC 2 cut(s) 140, 195
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 3 cut(s) 116, 1047, 1594
Bso31I GGTCTC 1 cut(s) 1105
Bsp1286I GDGCHC 1 cut(s) 937
Bsp19I CCATGG 1 cut(s) 1105
BspACI CCGC 6 cut(s) 956, 1039, 1197, 1231, 1449, 1509
BspANI GGCC 3 cut(s) 116, 1047, 1594
BspCNI CTCAG 3 cut(s) 970, 1157, 1195
BspFNI CGCG 1 cut(s) 532
BspHI TCATGA 1 cut(s) 1393
BspLI GGNNCC 7 cut(s) 211, 274, 344, 431, 565, 706, 1329
BspMAI CTGCAG 2 cut(s) 473, 1588
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 8 cut(s) 267, 280, 1117, 1171, 1207, 1267, 1360, 1420
BspT107I GGYRCC 2 cut(s) 342, 563
BspTNI GGTCTC 1 cut(s) 1105
BsrDI GCAATG 1 cut(s) 425
BsrI ACTGG 2 cut(s) 11, 444
BssECI CCNNGG 6 cut(s) 97, 237, 559, 627, 1042, 1105
BssNI GRCGYC 1 cut(s) 343
BssT1I CCWWGG 3 cut(s) 97, 559, 1105
Bst2UI CCWGG 2 cut(s) 628, 1530
Bst4CI ACNGT 6 cut(s) 79, 283, 497, 613, 1073, 1457
Bst6I CTCTTC 1 cut(s) 948
BstACI GRCGYC 1 cut(s) 343
BstC8I GCNNGC 4 cut(s) 416, 812, 1245, 1558
BstDEI CTNAG 7 cut(s) 70, 317, 369, 978, 1144, 1203, 1433
BstDSI CCRYGG 1 cut(s) 1105
BstF5I GGATG 1 cut(s) 1370
BstFNI CGCG 1 cut(s) 532
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 1 cut(s) 345
BstMAI GTCTC 4 cut(s) 985, 1105, 1446, 1608
BstMCI CGRYCG 1 cut(s) 1564
BstMWI GCNNNNNNNGC 5 cut(s) 420, 723, 964, 1295, 1676
BstNI CCWGG 2 cut(s) 628, 1530
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 3 cut(s) 236, 626, 1528
BstSFI CTRYAG 2 cut(s) 469, 1584
BstUI CGCG 1 cut(s) 532
BstX2I RGATCY 4 cut(s) 272, 1163, 1199, 1352
BstXI CCANNNNNNTGG 2 cut(s) 30, 794
BstYI RGATCY 4 cut(s) 272, 1163, 1199, 1352
Bsu36I CCTNAGG 1 cut(s) 1144
BsuRI GGCC 3 cut(s) 116, 1047, 1594
BtgI CCRYGG 1 cut(s) 1105
BtgZI GCGATG 3 cut(s) 213, 1427, 1688
BtsCI GGATG 1 cut(s) 1370
BtsIMutI CAGTG 2 cut(s) 437, 609
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 4 cut(s) 416, 812, 1245, 1558
CaiI CAGNNNCTG 1 cut(s) 845
CciI TCATGA 1 cut(s) 1393
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 4 cut(s) 114, 209, 705, 1592
CseI GACGC 2 cut(s) 855, 970
Csp6I GTAC 2 cut(s) 321, 564
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviQI GTAC 2 cut(s) 321, 564
DdeI CTNAG 7 cut(s) 70, 317, 369, 978, 1144, 1203, 1433
DinI GGCGCC 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 948
EarI CTCTTC 1 cut(s) 948
EciI GGCGGA 2 cut(s) 1212, 1464
Eco130I CCWWGG 3 cut(s) 97, 559, 1105
Eco31I GGTCTC 1 cut(s) 1105
Eco32I GATATC 1 cut(s) 1020
Eco47I GGWCC 2 cut(s) 209, 705
Eco57I CTGAAG 1 cut(s) 669
Eco81I CCTNAGG 1 cut(s) 1144
EcoO109I RGGNCCY 2 cut(s) 209, 705
EcoRII CCWGG 2 cut(s) 626, 1528
EcoRV GATATC 1 cut(s) 1020
EcoT14I CCWWGG 3 cut(s) 97, 559, 1105
EgeI GGCGCC 1 cut(s) 344
EheI GGCGCC 1 cut(s) 344
ErhI CCWWGG 3 cut(s) 97, 559, 1105
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 2 cut(s) 140, 195
FauI CCCGC 1 cut(s) 1224
FblI GTMKAC 2 cut(s) 1191, 1575
FokI GGATG 1 cut(s) 1377
FspBI CTAG 6 cut(s) 90, 585, 1601, 1637, 1689, 1693
GlaI GCGC 1 cut(s) 344
GsuI CTGGAG 3 cut(s) 461, 654, 1677
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 3 cut(s) 116, 1047, 1594
HapII CCGG 2 cut(s) 237, 1317
HgaI GACGC 2 cut(s) 855, 970
HhaI GCGC 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 343
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HincII GTYRAC 2 cut(s) 900, 1192
HindII GTYRAC 2 cut(s) 900, 1192
HindIII AAGCTT 2 cut(s) 146, 541
HinfI GANTC 7 cut(s) 373, 408, 912, 923, 1088, 1489, 1597
HpaI GTTAAC 1 cut(s) 900
HpaII CCGG 2 cut(s) 237, 1317
HphI GGTGA 1 cut(s) 945
Hpy166II GTNNAC 5 cut(s) 44, 619, 900, 1192, 1576
Hpy188III TCNNGA 5 cut(s) 482, 537, 1146, 1394, 1656
Hpy8I GTNNAC 5 cut(s) 44, 619, 900, 1192, 1576
Hpy99I CGWCG 1 cut(s) 1196
HpyAV CCTTC 6 cut(s) 228, 243, 449, 498, 827, 1058
HpyCH4III ACNGT 6 cut(s) 79, 283, 497, 613, 1073, 1457
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 7 cut(s) 364, 423, 471, 1003, 1030, 1124, 1586
HpyF10VI GCNNNNNNNGC 5 cut(s) 420, 723, 964, 1295, 1676
HpyF3I CTNAG 7 cut(s) 70, 317, 369, 978, 1144, 1203, 1433
HpySE526I ACGT 1 cut(s) 478
Hsp92I GRCGYC 1 cut(s) 343
HspAI GCGC 1 cut(s) 343
KasI GGCGCC 1 cut(s) 342
KpnI GGTACC 1 cut(s) 567
KspAI GTTAAC 1 cut(s) 900
LmnI GCTCC 3 cut(s) 737, 797, 1580
LweI GCATC 1 cut(s) 990
MaeI CTAG 6 cut(s) 90, 585, 1601, 1637, 1689, 1693
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 6 cut(s) 382, 776, 890, 1115, 1271, 1607
MboII GAAGA 3 cut(s) 18, 935, 1545
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 4 cut(s) 272, 1163, 1199, 1352
MhlI GDGCHC 1 cut(s) 937
MluCI AATT 8 cut(s) 163, 387, 446, 569, 755, 1012, 1312, 1618
Mly113I GGCGCC 1 cut(s) 343
MlyI GAGTC 3 cut(s) 367, 1498, 1606
MmeI TCCRAC 3 cut(s) 90, 576, 1472
MseI TTAA 4 cut(s) 81, 390, 899, 1311
MslI CAYNNNNRTG 3 cut(s) 28, 614, 833
MspI CCGG 2 cut(s) 237, 1317
MspR9I CCNGG 3 cut(s) 238, 628, 1530
MunI CAATTG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 2 cut(s) 628, 1530
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 5 cut(s) 420, 723, 964, 1295, 1676
NarI GGCGCC 1 cut(s) 343
NciI CCSGG 1 cut(s) 238
NcoI CCATGG 1 cut(s) 1105
NlaIV GGNNCC 7 cut(s) 211, 274, 344, 431, 565, 706, 1329
NmeAIII GCCGAG 2 cut(s) 1023, 1620
NmuCI GTSAC 5 cut(s) 382, 890, 1115, 1271, 1607
NspI RCATGY 1 cut(s) 697
OliI CACNNNNGTG 1 cut(s) 614
PagI TCATGA 1 cut(s) 1393
PciI ACATGT 1 cut(s) 693
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 4 cut(s) 408, 912, 923, 1088
PflMI CCANNNNNTGG 1 cut(s) 439
Ple19I CGATCG 1 cut(s) 1564
PleI GAGTC 3 cut(s) 367, 1497, 1605
PluTI GGCGCC 1 cut(s) 346
PpsI GAGTC 3 cut(s) 367, 1497, 1605
PpuMI RGGWCCY 2 cut(s) 209, 705
PscI ACATGT 1 cut(s) 693
PshBI ATTAAT 1 cut(s) 390
PsiI TTATAA 1 cut(s) 267
Psp5II RGGWCCY 2 cut(s) 209, 705
Psp6I CCWGG 2 cut(s) 626, 1528
PspGI CCWGG 2 cut(s) 626, 1528
PspN4I GGNNCC 7 cut(s) 211, 274, 344, 431, 565, 706, 1329
PspPI GGNCC 4 cut(s) 114, 209, 705, 1592
PspPPI RGGWCCY 2 cut(s) 209, 705
PstI CTGCAG 2 cut(s) 473, 1588
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 4 cut(s) 272, 1163, 1199, 1352
PvuI CGATCG 1 cut(s) 1564
RsaI GTAC 2 cut(s) 322, 565
RsaNI GTAC 2 cut(s) 321, 564
RseI CAYNNNNRTG 3 cut(s) 28, 614, 833
SalI GTCGAC 1 cut(s) 1190
SaqAI TTAA 4 cut(s) 81, 390, 899, 1311
Sau96I GGNCC 4 cut(s) 114, 209, 705, 1592
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 3 cut(s) 367, 1498, 1606
ScrFI CCNGG 3 cut(s) 238, 628, 1530
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 1 cut(s) 990
SfcI CTRYAG 2 cut(s) 469, 1584
SfoI GGCGCC 1 cut(s) 344
SinI GGWCC 2 cut(s) 209, 705
SmiMI CAYNNNNRTG 3 cut(s) 28, 614, 833
SmlI CTYRAG 2 cut(s) 47, 1265
SmoI CTYRAG 2 cut(s) 47, 1265
Sse9I AATT 8 cut(s) 163, 387, 446, 569, 755, 1012, 1312, 1618
SsiI CCGC 6 cut(s) 956, 1039, 1197, 1231, 1449, 1509
SspDI GGCGCC 1 cut(s) 342
SspMI CTAG 6 cut(s) 90, 585, 1601, 1637, 1689, 1693
StyD4I CCNGG 3 cut(s) 236, 626, 1528
StyI CCWWGG 3 cut(s) 97, 559, 1105
TaaI ACNGT 6 cut(s) 79, 283, 497, 613, 1073, 1457
TaiI ACGT 1 cut(s) 481
TaqI TCGA 4 cut(s) 910, 1016, 1191, 1499
TasI AATT 8 cut(s) 163, 387, 446, 569, 755, 1012, 1312, 1618
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 4 cut(s) 408, 912, 923, 1088
Tru1I TTAA 4 cut(s) 81, 390, 899, 1311
Tru9I TTAA 4 cut(s) 81, 390, 899, 1311
TscAI CASTG 2 cut(s) 444, 616
TseFI GTSAC 5 cut(s) 382, 890, 1115, 1271, 1607
Tsp45I GTSAC 5 cut(s) 382, 890, 1115, 1271, 1607
TspDTI ATGAA 6 cut(s) 210, 468, 656, 1040, 1124, 1203
TspGWI ACGGA 1 cut(s) 1593
TspRI CASTG 2 cut(s) 444, 616
Van91I CCANNNNNTGG 1 cut(s) 439
VpaK11BI GGWCC 2 cut(s) 209, 705
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 1 cut(s) 446
XceI RCATGY 1 cut(s) 697
XmiI GTMKAC 2 cut(s) 1191, 1575
XspI CTAG 6 cut(s) 90, 585, 1601, 1637, 1689, 1693
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.