Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014935

Physical Location & Seq

Genomic Coordinates Forward (+)

20640992 .. 20642787

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCGGGCTACAACCTCGAAGCTATCGAAGCGGCACCTTTGAAAGACGATCTGGATATTGTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAGCAATGGAGACCATTTTTGCACCATTACCACCTGATCATTGTCCAAGATGGAGACCCTTCCATCAAGATCCGAGTTCCCGAGGGTTATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGGTCCAAGAGCTAATTGTATCTCCTACAAAGATGGTGGTTGTCGCTGCTTTGGCTTCATGGTTTCTAAAAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCCAAGTGGGAAAGACATCAATGTGATAGCTCAGCACATAAAGAACCTTGAAACACCTTCAACACCACACTACTTCAACACTCTCTATGACCCTTTTAGAGATGGAACTGATTTCGTCAGAGGGTATCCTTTCAGTCTAAGGGAAGGTGTCCAAACCGCCATATCTCATGGTCTTTGGCTCAACATCCCTGACTATGATGCCCCAACCCAACTTGTGAAGCCCCGCGAACGTAACACGAGGTATGTGGATGCAGTAATGACAATTCCAAAAAGAGTATTGTACCCAATGTGTGGTATGAATCTTGCTTTCAATAGAGAGCTTGTTGGACCTGCTATGTACTTTGGACTTATGGGTGAAGGCCAGCCCATTTCTCGGTACGATGACATGTGGGCTGGTTGGGCAGCAAAGGTGGTGTGTGACCACTTGGGCTTTGGGGTCAAGACTGGTCTGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCATTCGTGAACCTGAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCTTCCAAAACCTTCGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGTTATATGGAAATTTCAAATATGACAAAAGAAAAGCTCACTAAAGTGGATCCTTACTTTGAGAAGTTGGCTGATGCAATGGTGGTTTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAAGAAGCAGAGCGATGGCAAAGATGTCAAGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009225 GO:0009832 GO:0009987 GO:0012505 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

364

Amino Acids

41.87

Weight (kDa)

6.56

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGP	PF03214	15 - 348	2.2e-178	Reversibly glycosylated polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50750
fragaria_vesca	FvH4_5g08630 FvH4_5g08630
malus_domestica	MD14G1154400.v1.1
prunus_persica	Prupe.5G148600_v2.0.a1
pyrus_communis	pycom06g12960
rosa_chinensis	RchiOBHm_Chr7g0189771
rosa_laevigata	RLG00000004592
rosa_multiflora	Rmu_sc0014337.1_g000001 Rmu_sc0029387.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265180
rosa_rugosa	Rorug06G0499800 Rorug06G0499800
rosa_samantha	Rh7AG104800 Rh7CG109400
rosa_wichuraiana	Rw7G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AccB1I	GGYRCC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccII	CGCG	1 cut(s)	567
AciI	CCGC	5 cut(s)	5, 32, 498, 565, 1046
AclWI	GGATC	8 cut(s)	58, 157, 214, 227, 335, 348, 974, 987
AcsI	RAATTY	1 cut(s)	942
AcuI	CTGAAG	1 cut(s)	857
AfaI	GTAC	3 cut(s)	623, 680, 719
AfiI	CCNNNNNNNGG	2 cut(s)	632, 714
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	6 cut(s)	43, 392, 402, 418, 652, 948
AleI	CACNNNNGTG	1 cut(s)	974
AluBI	AGCT	8 cut(s)	23, 193, 236, 371, 661, 926, 967, 1039
AluI	AGCT	8 cut(s)	23, 193, 236, 371, 661, 926, 967, 1039
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	3 cut(s)	97, 141, 905
AlwI	GGATC	8 cut(s)	58, 157, 214, 227, 335, 348, 974, 987
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	700, 1086
ApeKI	GCWGC	3 cut(s)	270, 743, 923
ApoI	RAATTY	1 cut(s)	942
ArsI	GACNNNNNNTTYG	2 cut(s)	883, 915
AspS9I	GGNCC	2 cut(s)	227, 668
AsuHPI	GGTGA	1 cut(s)	707
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	227, 668
BamHI	GGATCC	3 cut(s)	219, 340, 979
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BauI	CACGAG	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	257, 755, 935
BccI	CCATC	6 cut(s)	80, 137, 164, 251, 437, 1064
BceAI	ACGGC	1 cut(s)	778
BciVI	GTATCC	1 cut(s)	477
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	3 cut(s)	97, 141, 905
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	921
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	4 cut(s)	33, 271, 744, 924
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	4 cut(s)	34, 272, 745, 925
Bme18I	GGWCC	2 cut(s)	227, 668
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	227, 668
BmiI	GGNNCC	5 cut(s)	36, 221, 342, 879, 981
BmsI	GCATC	3 cut(s)	529, 580, 994
Bpu1102I	GCTNAGC	1 cut(s)	372
BsaI	GGTCTC	2 cut(s)	97, 141
BsaJI	CCNNGG	2 cut(s)	174, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 714
Bse118I	RCCGGY	1 cut(s)	1048
Bse1I	ACTGG	3 cut(s)	790, 816, 866
Bse3DI	GCAATG	2 cut(s)	104, 1014
BseDI	CCNNGG	2 cut(s)	174, 223
BseGI	GGATG	2 cut(s)	525, 595
BseLI	CCNNNNNNNGG	2 cut(s)	632, 714
BseMI	GCAATG	2 cut(s)	104, 1014
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	790, 816, 866
BseRI	GAGGAG	1 cut(s)	1049
BseXI	GCAGC	3 cut(s)	257, 755, 935
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	702, 1088
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	1049
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	2 cut(s)	632, 714
BsmAI	GTCTC	3 cut(s)	97, 141, 905
BsmBI	CGTCTC	1 cut(s)	905
BsmFI	GGGAC	1 cut(s)	867
BsnI	GGCC	2 cut(s)	702, 1088
Bso31I	GGTCTC	2 cut(s)	97, 141
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	7 cut(s)	49, 63, 129, 162, 219, 340, 979
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	5 cut(s)	5, 32, 498, 565, 1046
BspANI	GGCC	2 cut(s)	702, 1088
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	5 cut(s)	36, 221, 342, 879, 981
BspMAI	CTGCAG	1 cut(s)	925
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	8 cut(s)	58, 157, 214, 227, 335, 348, 974, 987
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	2 cut(s)	97, 141
BsrDI	GCAATG	2 cut(s)	104, 1014
BsrFI	RCCGGY	1 cut(s)	1048
BsrI	ACTGG	3 cut(s)	790, 816, 866
BssAI	RCCGGY	1 cut(s)	1048
BssECI	CCNNGG	2 cut(s)	174, 223
BssMI	GATC	7 cut(s)	49, 63, 129, 162, 219, 340, 979
BssSI	CACGAG	1 cut(s)	577
BssT1I	CCWWGG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	577
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	7, 704
BstDEI	CTNAG	2 cut(s)	372, 479
BstF5I	GGATG	2 cut(s)	525, 595
BstFNI	CGCG	1 cut(s)	567
BstKTI	GATC	7 cut(s)	52, 66, 132, 165, 222, 343, 982
BstMAI	GTCTC	3 cut(s)	97, 141, 905
BstMBI	GATC	7 cut(s)	49, 63, 129, 162, 219, 340, 979
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 276, 740, 1045
BstNSI	RCATGY	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	921
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	3 cut(s)	257, 755, 935
BstX2I	RGATCY	4 cut(s)	162, 219, 340, 979
BstYI	RGATCY	4 cut(s)	162, 219, 340, 979
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	702, 1088
BtgZI	GCGATG	1 cut(s)	1083
BtsCI	GGATG	2 cut(s)	525, 595
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	2 cut(s)	859, 918
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	7, 704
Cfr10I	RCCGGY	1 cut(s)	1048
Cfr13I	GGNCC	2 cut(s)	227, 668
Csp6I	GTAC	3 cut(s)	622, 679, 718
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	3 cut(s)	283, 509, 727
CviQI	GTAC	3 cut(s)	622, 679, 718
DdeI	CTNAG	2 cut(s)	372, 479
DpnI	GATC	7 cut(s)	51, 65, 131, 164, 221, 342, 981
DpnII	GATC	7 cut(s)	49, 63, 129, 162, 219, 340, 979
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	2 cut(s)	97, 141
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	227, 668
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	905
FaeI	CATG	3 cut(s)	286, 512, 730
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	3 cut(s)	282, 508, 726
FauI	CCCGC	2 cut(s)	572, 1053
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	33, 271, 744, 924
FokI	GGATG	2 cut(s)	512, 602
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	33, 271, 744, 924
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	4 cut(s)	33, 271, 744, 924
HaeIII	GGCC	2 cut(s)	702, 1088
HapII	CCGG	1 cut(s)	1049
Hin1II	CATG	3 cut(s)	286, 512, 730
HinfI	GANTC	3 cut(s)	640, 855, 911
HpaII	CCGG	1 cut(s)	1049
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	4 cut(s)	77, 167, 461, 916
Hpy188III	TCNNGA	7 cut(s)	53, 92, 160, 173, 781, 829, 904
Hpy8I	GTNNAC	1 cut(s)	832
HpyAV	CCTTC	5 cut(s)	162, 408, 479, 692, 905
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	4 cut(s)	115, 593, 923, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 276, 740, 1045
HpyF3I	CTNAG	2 cut(s)	372, 479
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	3 cut(s)	286, 512, 730
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	7 cut(s)	49, 63, 129, 162, 219, 340, 979
LmnI	GCTCC	1 cut(s)	1036
Lsp1109I	GCAGC	3 cut(s)	257, 755, 935
LweI	GCATC	3 cut(s)	529, 580, 994
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	3 cut(s)	572, 758, 818
MalI	GATC	7 cut(s)	51, 65, 131, 164, 221, 342, 981
MboI	GATC	7 cut(s)	49, 63, 129, 162, 219, 340, 979
MboII	GAAGA	4 cut(s)	850, 877, 881, 1069
MflI	RGATCY	4 cut(s)	162, 219, 340, 979
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	3 cut(s)	238, 603, 942
MlyI	GAGTC	1 cut(s)	849
MmeI	TCCRAC	1 cut(s)	646
MnlI	CCTC	7 cut(s)	26, 92, 169, 455, 573, 1018, 1027
MseI	TTAA	2 cut(s)	1041, 1053
MslI	CAYNNNNRTG	2 cut(s)	362, 974
MspI	CCGG	1 cut(s)	1049
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	4 cut(s)	29, 276, 740, 1045
NdeII	GATC	7 cut(s)	49, 63, 129, 162, 219, 340, 979
NlaIII	CATG	3 cut(s)	286, 512, 730
NlaIV	GGNNCC	5 cut(s)	36, 221, 342, 879, 981
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	1 cut(s)	730
OliI	CACNNNNGTG	1 cut(s)	974
PciI	ACATGT	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	640, 911
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	4 cut(s)	34, 272, 745, 925
PleI	GAGTC	1 cut(s)	849
PpsI	GAGTC	1 cut(s)	849
PscI	ACATGT	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	5 cut(s)	36, 221, 342, 879, 981
PspPI	GGNCC	2 cut(s)	227, 668
PstI	CTGCAG	1 cut(s)	925
PsuI	RGATCY	4 cut(s)	162, 219, 340, 979
RsaI	GTAC	3 cut(s)	623, 680, 719
RsaNI	GTAC	3 cut(s)	622, 679, 718
RseI	CAYNNNNRTG	2 cut(s)	362, 974
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	1041, 1053
SatI	GCNGC	4 cut(s)	33, 271, 744, 924
Sau3AI	GATC	7 cut(s)	49, 63, 129, 162, 219, 340, 979
Sau96I	GGNCC	2 cut(s)	227, 668
SchI	GAGTC	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	3 cut(s)	529, 580, 994
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	2 cut(s)	227, 668
SmiMI	CAYNNNNRTG	2 cut(s)	362, 974
Sse9I	AATT	3 cut(s)	238, 603, 942
SsiI	CCGC	5 cut(s)	5, 32, 498, 565, 1046
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	4 cut(s)	18, 27, 84, 905
TasI	AATT	3 cut(s)	238, 603, 942
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	640, 911
Tru1I	TTAA	2 cut(s)	1041, 1053
Tru9I	TTAA	2 cut(s)	1041, 1053
TscAI	CASTG	2 cut(s)	866, 925
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	3 cut(s)	270, 743, 923
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	2 cut(s)	271, 653
TspRI	CASTG	2 cut(s)	866, 925
Van91I	CCANNNNNTGG	1 cut(s)	632
VpaK11BI	GGWCC	2 cut(s)	227, 668
XapI	RAATTY	1 cut(s)	942
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	770
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.