FvH4_5g08630

UDP-arabinopyranose mutase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014935
Physical Location & Seq
Reverse (-)
4960247 .. 4962553
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08630.t2

Sequence Viewer

Length: 1071 bp
ATGGTAGCTGATCTGAAAGACGAGCTCGACATCGTGATCCCGACTATCAGGAACCTTGATTTCTTGGAGCAGTGGAGGCCTTTCTTCCAACCCTACCACCTCATCATCGTACAAGACGGCGATCCCTCCAATGCTATTCGAGTTCCCAACGGCTTCGACTACGAGCTCTATAACCGTGACCATGTCAACAAGGTCTTAGGTCCTAAGGCTAGCTGCATTTCTTTCAAGGACTCTGCATGTCGCTGCTTTGGTTTCTTGGTGTCCAAGAAAAAGTACATCTTCACCATTGATGACGATTGCTTTGTGGCAAAGGATCCTAGTGGGAAAGAGATCAATGCACTGGCACAGCACATCCGAAACCTGCTGAAACCATCAACTCCATTGTTCTTCAACACACTCTATGATCCATTTGCTGAAGGAGCTGACTTTGTTCGTGGCTACCCATTTAGCTTGCGAGAAGGCGTGCCTACTGCTATTTCTCATGGTCTTTGGCTCAACATTCCTGACTACGATGCCCCAACTCAGCTTGTCAAGCCTCGTGAGCGCAACACCAGGTATGTTGATGCGGTGATGACAATCCCCAAGGGCACCCTTTTCCCAATGTGTGGGATGAATCTGGCTTTTGATAGGGAGCTGATAGGCCCAGCTATGTACTTTGGGCTCATGGGTGATGGCCAGCCCATTGGCAGATATGATGATATGTGGGCTGGCTGGTGTGCCAAGGTGATATGTGACCATTTGGGGATAGGGGTTAAGACAGGACTGCCATACATATGGCATAGCAAGGCAAGCAACCCATTTGTGAACCTGAAGAAAGAGTACAAAGGCATTTACTGGCAGGAAGATATTATCCCATTTTTCCAGTCCATTGTTCTCCCGAAGGAGTGCAAAACTGTTCAAGAATGCTACATTGTGCTTGCCAAAAGTGTCAAGGAAAAACTTGGCCCAATTGATCCTTACTTTCAGAAACTTGGGGATGCCATGGTCACTTGGATTGAAGCCTGGAATGAGCTTAACCCACCACCACAGACAGCTGCTCAGACTCACCCAAATGCTGTTAAGAAAAACTAA

Protein Analysis

357

Amino Acids

40.47

Weight (kDa)

6.39

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 6 - 342 1.8e-176 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50750
fragaria_vesca FvH4_5g08630 FvH4_5g08630
malus_domestica MD14G1154400.v1.1
prunus_persica Prupe.5G148600_v2.0.a1
pyrus_communis pycom06g12960
rosa_chinensis RchiOBHm_Chr7g0189771
rosa_laevigata RLG00000004592
rosa_multiflora Rmu_sc0014337.1_g000001 Rmu_sc0029387.1_g000001
rosa_roxburghii Rroxscaffold_3G00265180
rosa_rugosa Rorug06G0499800 Rorug06G0499800
rosa_samantha Rh7AG104800 Rh7CG109400
rosa_wichuraiana Rw7G009070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 605
AciI CCGC 1 cut(s) 566
AclWI GGATC 6 cut(s) 31, 116, 308, 321, 398, 947
AcoI YGGCCR 1 cut(s) 673
AcuI CTGAAG 2 cut(s) 435, 830
AfaI GTAC 4 cut(s) 111, 275, 653, 821
AfiI CCNNNNNNNGG 1 cut(s) 605
AgsI TTSAA 4 cut(s) 226, 391, 899, 998
AjnI CCWGG 2 cut(s) 551, 1001
Alw21I GWGCWC 2 cut(s) 27, 168
AlwI GGATC 6 cut(s) 31, 116, 308, 321, 398, 947
AoxI GGCC 4 cut(s) 77, 640, 673, 943
ApeKI GCWGC 3 cut(s) 213, 243, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspLEI GCGC 1 cut(s) 546
AspS9I GGNCC 3 cut(s) 200, 641, 944
AsuHPI GGTGA 5 cut(s) 274, 580, 680, 736, 1037
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 590
BalI TGGCCA 1 cut(s) 675
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 3 cut(s) 27, 168, 663
BarI GAAGNNNNNNTAC 2 cut(s) 803, 835
BauI CACGAG 1 cut(s) 537
Bbv12I GWGCWC 2 cut(s) 27, 168
BbvI GCAGC 3 cut(s) 200, 230, 1021
BccI CCATC 2 cut(s) 379, 665
BceAI ACGGC 2 cut(s) 133, 166
BciT130I CCWGG 2 cut(s) 553, 1003
BfaI CTAG 2 cut(s) 210, 318
BfuAI ACCTGC 1 cut(s) 369
BisI GCNGC 3 cut(s) 214, 244, 1035
BlsI GCNGC 3 cut(s) 215, 245, 1036
Bme1390I CCNGG 2 cut(s) 553, 1003
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 3 cut(s) 200, 641, 944
BmiI GGNNCC 3 cut(s) 53, 315, 589
BmrFI CCNGG 2 cut(s) 553, 1003
BmsI GCATC 3 cut(s) 502, 553, 967
BmtI GCTAGC 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 575
BsaJI CCNNGG 3 cut(s) 582, 720, 981
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse1I ACTGG 3 cut(s) 345, 839, 862
Bse21I CCTNAGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 575
BseBI CCWGG 2 cut(s) 553, 1003
BseDI CCNNGG 3 cut(s) 582, 720, 981
BseGI GGATG 3 cut(s) 351, 615, 982
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMII CTCAG 2 cut(s) 536, 1052
BseNI ACTGG 3 cut(s) 345, 839, 862
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 3 cut(s) 200, 230, 1021
BseYI CCCAGC 1 cut(s) 643
BshFI GGCC 4 cut(s) 79, 642, 675, 945
BshNI GGYRCC 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 27, 168
BslI CCNNNNNNNGG 1 cut(s) 605
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 4 cut(s) 79, 642, 675, 945
Bsp1286I GDGCHC 4 cut(s) 27, 168, 590, 663
Bsp143I GATC 7 cut(s) 10, 36, 121, 313, 330, 403, 952
Bsp19I CCATGG 1 cut(s) 981
BspACI CCGC 1 cut(s) 566
BspANI GGCC 4 cut(s) 79, 642, 675, 945
BspCNI CTCAG 2 cut(s) 535, 1051
BspLI GGNNCC 3 cut(s) 53, 315, 589
BspMI ACCTGC 1 cut(s) 369
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 6 cut(s) 31, 116, 308, 321, 398, 947
BspT107I GGYRCC 1 cut(s) 587
BsrI ACTGG 3 cut(s) 345, 839, 862
BssECI CCNNGG 3 cut(s) 582, 720, 981
BssMI GATC 7 cut(s) 10, 36, 121, 313, 330, 403, 952
BssSI CACGAG 1 cut(s) 537
BssT1I CCWWGG 3 cut(s) 582, 720, 981
Bst2BI CACGAG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 553, 1003
Bst4CI ACNGT 2 cut(s) 176, 895
BstC8I GCNNGC 7 cut(s) 211, 452, 464, 677, 709, 790, 918
BstDEI CTNAG 4 cut(s) 196, 204, 522, 1038
BstDSI CCRYGG 1 cut(s) 981
BstF5I GGATG 3 cut(s) 351, 615, 982
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 7 cut(s) 13, 39, 124, 316, 333, 406, 955
BstMBI GATC 7 cut(s) 10, 36, 121, 313, 330, 403, 952
BstMWI GCNNNNNNNGC 5 cut(s) 76, 419, 532, 541, 789
BstNI CCWGG 2 cut(s) 553, 1003
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 551, 1001
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 3 cut(s) 200, 230, 1021
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 2 cut(s) 683, 774
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 4 cut(s) 79, 642, 675, 945
BtgI CCRYGG 1 cut(s) 981
BtsCI GGATG 3 cut(s) 351, 615, 982
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 77, 338
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 7 cut(s) 211, 452, 464, 677, 709, 790, 918
CfoI GCGC 1 cut(s) 546
Cfr13I GGNCC 3 cut(s) 200, 641, 944
CsiI ACCWGGT 1 cut(s) 551
Csp6I GTAC 4 cut(s) 110, 274, 652, 820
CviAII CATG 5 cut(s) 182, 237, 482, 664, 982
CviQI GTAC 4 cut(s) 110, 274, 652, 820
DdeI CTNAG 4 cut(s) 196, 204, 522, 1038
DpnI GATC 7 cut(s) 12, 38, 123, 315, 332, 405, 954
DpnII GATC 7 cut(s) 10, 36, 121, 313, 330, 403, 952
EaeI YGGCCR 1 cut(s) 673
Ecl136II GAGCTC 2 cut(s) 25, 166
Eco130I CCWWGG 3 cut(s) 582, 720, 981
Eco147I AGGCCT 1 cut(s) 79
Eco24I GRGCYC 3 cut(s) 27, 168, 663
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 2 cut(s) 25, 166
Eco57I CTGAAG 2 cut(s) 435, 830
Eco81I CCTNAGG 1 cut(s) 204
EcoICRI GAGCTC 2 cut(s) 25, 166
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 551, 1001
EcoT14I CCWWGG 3 cut(s) 582, 720, 981
EcoT38I GRGCYC 3 cut(s) 27, 168, 663
ErhI CCWWGG 3 cut(s) 582, 720, 981
FaeI CATG 5 cut(s) 185, 240, 485, 667, 985
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 5 cut(s) 181, 236, 481, 663, 981
FauNDI CATATG 1 cut(s) 773
Fnu4HI GCNGC 3 cut(s) 214, 244, 1035
FokI GGATG 3 cut(s) 338, 622, 989
FriOI GRGCYC 3 cut(s) 27, 168, 663
Fsp4HI GCNGC 3 cut(s) 214, 244, 1035
FspBI CTAG 2 cut(s) 210, 318
GlaI GCGC 1 cut(s) 545
GluI GCNGC 3 cut(s) 214, 244, 1035
GsaI CCCAGC 1 cut(s) 647
HaeIII GGCC 4 cut(s) 79, 642, 675, 945
HhaI GCGC 1 cut(s) 546
Hin1II CATG 5 cut(s) 185, 240, 485, 667, 985
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 3 cut(s) 230, 613, 1042
HphI GGTGA 5 cut(s) 274, 580, 680, 736, 1037
Hpy166II GTNNAC 2 cut(s) 187, 805
Hpy188I TCNGA 4 cut(s) 15, 356, 966, 1041
Hpy188III TCNNGA 7 cut(s) 34, 40, 49, 503, 539, 877, 899
Hpy8I GTNNAC 2 cut(s) 187, 805
HpyAV CCTTC 3 cut(s) 410, 452, 874
HpyCH4III ACNGT 2 cut(s) 176, 895
HpyCH4V TGCA 4 cut(s) 216, 236, 338, 888
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 419, 532, 541, 789
HpyF3I CTNAG 4 cut(s) 196, 204, 522, 1038
Hsp92II CATG 5 cut(s) 185, 240, 485, 667, 985
HspAI GCGC 1 cut(s) 544
Kzo9I GATC 7 cut(s) 10, 36, 121, 313, 330, 403, 952
LmnI GCTCC 3 cut(s) 67, 419, 631
Lsp1109I GCAGC 3 cut(s) 200, 230, 1021
LweI GCATC 3 cut(s) 502, 553, 967
MabI ACCWGGT 1 cut(s) 551
MaeI CTAG 2 cut(s) 210, 318
MaeIII GTNAC 3 cut(s) 176, 731, 985
MalI GATC 7 cut(s) 12, 38, 123, 315, 332, 405, 954
MboI GATC 7 cut(s) 10, 36, 121, 313, 330, 403, 952
MboII GAAGA 5 cut(s) 76, 271, 379, 823, 854
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 4 cut(s) 27, 168, 590, 663
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 1 cut(s) 948
MluNI TGGCCA 1 cut(s) 675
MlyI GAGTC 2 cut(s) 224, 1036
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 4 cut(s) 69, 110, 136, 546
Mox20I TGGCCA 1 cut(s) 675
MscI TGGCCA 1 cut(s) 675
MseI TTAA 3 cut(s) 753, 1014, 1059
MslI CAYNNNNRTG 2 cut(s) 772, 1050
Msp20I TGGCCA 1 cut(s) 675
MspA1I CMGCKG 1 cut(s) 1034
MspR9I CCNGG 2 cut(s) 553, 1003
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 2 cut(s) 553, 1003
MwoI GCNNNNNNNGC 5 cut(s) 76, 419, 532, 541, 789
NcoI CCATGG 1 cut(s) 981
NdeI CATATG 1 cut(s) 773
NdeII GATC 7 cut(s) 10, 36, 121, 313, 330, 403, 952
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 5 cut(s) 185, 240, 485, 667, 985
NlaIV GGNNCC 3 cut(s) 53, 315, 589
NmuCI GTSAC 3 cut(s) 176, 731, 985
NspI RCATGY 1 cut(s) 240
PceI AGGCCT 1 cut(s) 79
PctI GAATGC 1 cut(s) 908
PfeI GAWTC 1 cut(s) 613
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 3 cut(s) 215, 245, 1036
PleI GAGTC 2 cut(s) 224, 1036
PpsI GAGTC 2 cut(s) 224, 1036
PpuMI RGGWCCY 1 cut(s) 200
Psp124BI GAGCTC 2 cut(s) 27, 168
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 551, 1001
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 2 cut(s) 551, 1001
PspN4I GGNNCC 3 cut(s) 53, 315, 589
PspPI GGNCC 3 cut(s) 200, 641, 944
PspPPI RGGWCCY 1 cut(s) 200
PsuI RGATCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 4 cut(s) 111, 275, 653, 821
RsaNI GTAC 4 cut(s) 110, 274, 652, 820
RseI CAYNNNNRTG 2 cut(s) 772, 1050
SacI GAGCTC 2 cut(s) 27, 168
SaqAI TTAA 3 cut(s) 753, 1014, 1059
SatI GCNGC 3 cut(s) 214, 244, 1035
Sau3AI GATC 7 cut(s) 10, 36, 121, 313, 330, 403, 952
Sau96I GGNCC 3 cut(s) 200, 641, 944
SchI GAGTC 2 cut(s) 224, 1036
ScrFI CCNGG 2 cut(s) 553, 1003
SduI GDGCHC 4 cut(s) 27, 168, 590, 663
SexAI ACCWGGT 1 cut(s) 551
SfaNI GCATC 3 cut(s) 502, 553, 967
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 772, 1050
Sse9I AATT 1 cut(s) 948
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 1 cut(s) 566
SspMI CTAG 2 cut(s) 210, 318
SstI GAGCTC 2 cut(s) 27, 168
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 551, 1001
StyI CCWWGG 3 cut(s) 582, 720, 981
TaaI ACNGT 2 cut(s) 176, 895
TaqI TCGA 3 cut(s) 27, 139, 156
TasI AATT 1 cut(s) 948
TatI WGTACW 3 cut(s) 273, 651, 819
TfiI GAWTC 1 cut(s) 613
Tru1I TTAA 3 cut(s) 753, 1014, 1059
Tru9I TTAA 3 cut(s) 753, 1014, 1059
TscAI CASTG 2 cut(s) 77, 345
TseFI GTSAC 3 cut(s) 176, 731, 985
TseI GCWGC 3 cut(s) 213, 243, 1034
Tsp45I GTSAC 3 cut(s) 176, 731, 985
TspDTI ATGAA 1 cut(s) 626
TspRI CASTG 2 cut(s) 77, 345
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 1 cut(s) 240
XspI CTAG 2 cut(s) 210, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.