Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029387.1

Orthogroup ID

OG0014935

Physical Location & Seq

Genomic Coordinates Forward (+)

5675 .. 7437

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029387.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atggccctggtagctgatctgcaagacgagctcgacattgtgatcccgactatcaggaaccttgatttcttggagcaatggaggcctttctttcaaccctaccacctcatcatcgtgcaagacggcgatccctccaatgctattcgggttcctaacggcttcgactacgagctctataaccgtgaccatgtcaacaaagtgttgggtcctacggctagctgcatttctttcaaagactcagcttgtcgctgctttggtttcttggtgtccaagaaaaagtacatcttcaccattgatgatgactgctttgtggcaaaggatcctagtggcaaagagataaatgcattggcacagcacatccgaaacctgctcaaaccatcaactccattgttattcaacacactctatgacccgtttgcagaaggagcggactttgttcgtgggtacccatttagcttgcgagaaggcctgcccaccgctatttctcatggtctttggctcaacattcctgactacgatgccccgactcagcttgtcaagccacgtgagcgcaacaccaggtatgttgatgctgtgatgacaatccccaaaggcacccttttcccaatgtgtgggatgaatctggcttttaacagggagctgataggcccagccatgtactttgggctcatgggtgatggccagcccattggcagatatgatgatatgtgggctggctggtgtgccaaggtgatatgcgaccatttggggctaggtgttaagacaggactgccatacatatggcatagcaaggcaagcaacccatttgtgaatctgaagaaagagtacaaaggcatttactggcaggaagatatgatcccatttttccagtccatcattctcccaaaagagtgcaaaactgttcaacaatgctacattatgcttgccaagagtgtcaaggaaaaactcggcccagttgatccttactttcagaaactaggggatgccatggttacttggattgacgcatggaatgagctgaacccaccaccacaaacagcagctccggctcatccaaatggtgttaagaaaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009225 GO:0009832 GO:0009987 GO:0012505 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

358

Amino Acids

40.56

Weight (kDa)

6.39

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50750
fragaria_vesca	FvH4_5g08630 FvH4_5g08630
malus_domestica	MD14G1154400.v1.1
prunus_persica	Prupe.5G148600_v2.0.a1
pyrus_communis	pycom06g12960
rosa_chinensis	RchiOBHm_Chr7g0189771
rosa_laevigata	RLG00000004592
rosa_multiflora	Rmu_sc0014337.1_g000001 Rmu_sc0029387.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265180
rosa_rugosa	Rorug06G0499800 Rorug06G0499800
rosa_samantha	Rh7AG104800 Rh7CG109400
rosa_wichuraiana	Rw7G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	375
Acc65I	GGTACC	1 cut(s)	444
AccB1I	GGYRCC	2 cut(s)	444, 593
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccBSI	CCGCTC	1 cut(s)	428
AciI	CCGC	2 cut(s)	428, 477
AclWI	GGATC	6 cut(s)	37, 122, 314, 327, 850, 953
AcoI	YGGCCR	1 cut(s)	679
AcuI	CTGAAG	1 cut(s)	836
AcvI	CACGTG	1 cut(s)	545
AfaI	GTAC	4 cut(s)	281, 446, 659, 827
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	4 cut(s)	95, 232, 397, 905
AjnI	CCWGG	2 cut(s)	6, 557
Alw21I	GWGCWC	2 cut(s)	33, 174
AlwI	GGATC	6 cut(s)	37, 122, 314, 327, 850, 953
AoxI	GGCC	6 cut(s)	3, 83, 466, 646, 679, 949
ApeKI	GCWGC	3 cut(s)	219, 249, 1040
Asp718I	GGTACC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	4 cut(s)	4, 206, 647, 950
AsuHPI	GGTGA	3 cut(s)	280, 686, 742
AsuNHI	GCTAGC	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	681
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	2 cut(s)	444, 593
BanII	GRGCYC	3 cut(s)	33, 174, 669
BarI	GAAGNNNNNNTAC	2 cut(s)	809, 841
BbrPI	CACGTG	1 cut(s)	545
Bbv12I	GWGCWC	2 cut(s)	33, 174
BbvI	GCAGC	3 cut(s)	206, 236, 1052
BccI	CCATC	3 cut(s)	385, 671, 881
BceAI	ACGGC	3 cut(s)	139, 172, 228
BciT130I	CCWGG	2 cut(s)	8, 559
BfaI	CTAG	4 cut(s)	216, 324, 752, 977
BfuAI	ACCTGC	1 cut(s)	375
BisI	GCNGC	3 cut(s)	220, 250, 1041
BlsI	GCNGC	3 cut(s)	221, 251, 1042
Bme1390I	CCNGG	2 cut(s)	8, 559
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	4 cut(s)	4, 206, 647, 950
BmiI	GGNNCC	6 cut(s)	59, 150, 207, 321, 446, 595
BmrFI	CCNGG	2 cut(s)	8, 559
BmrI	ACTGGG	1 cut(s)	947
BmsI	GCATC	3 cut(s)	508, 559, 973
BmtI	GCTAGC	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	947
BsaAI	YACGTR	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	6, 726, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	1027, 1057
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse1I	ACTGG	3 cut(s)	845, 868, 953
Bse3DI	GCAATG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	8, 559
BseDI	CCNNGG	3 cut(s)	6, 726, 987
BseGI	GGATG	4 cut(s)	357, 621, 988, 1051
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	252, 542
BseNI	ACTGG	3 cut(s)	845, 868, 953
BseXI	GCAGC	3 cut(s)	206, 236, 1052
BseYI	CCCAGC	1 cut(s)	649
BshFI	GGCC	6 cut(s)	5, 85, 468, 648, 681, 951
BshNI	GGYRCC	2 cut(s)	444, 593
BsiHKAI	GWGCWC	2 cut(s)	33, 174
BsiSI	CCGG	1 cut(s)	1046
BslI	CCNNNNNNNGG	1 cut(s)	611
BsnI	GGCC	6 cut(s)	5, 85, 468, 648, 681, 951
Bsp1286I	GDGCHC	3 cut(s)	33, 174, 669
Bsp143I	GATC	6 cut(s)	16, 42, 127, 319, 855, 958
Bsp19I	CCATGG	1 cut(s)	987
BspACI	CCGC	2 cut(s)	428, 477
BspANI	GGCC	6 cut(s)	5, 85, 468, 648, 681, 951
BspCNI	CTCAG	2 cut(s)	251, 541
BspLI	GGNNCC	6 cut(s)	59, 150, 207, 321, 446, 595
BspMI	ACCTGC	1 cut(s)	375
BspOI	GCTAGC	1 cut(s)	219
BspPI	GGATC	6 cut(s)	37, 122, 314, 327, 850, 953
BspT107I	GGYRCC	2 cut(s)	444, 593
BsrBI	CCGCTC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	845, 868, 953
BssECI	CCNNGG	3 cut(s)	6, 726, 987
BssMI	GATC	6 cut(s)	16, 42, 127, 319, 855, 958
BssT1I	CCWWGG	2 cut(s)	726, 987
Bst2UI	CCWGG	2 cut(s)	8, 559
Bst4CI	ACNGT	2 cut(s)	182, 901
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	7 cut(s)	217, 458, 470, 683, 715, 796, 924
BstDEI	CTNAG	2 cut(s)	238, 528
BstDSI	CCRYGG	1 cut(s)	987
BstF5I	GGATG	4 cut(s)	357, 621, 988, 1051
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	6 cut(s)	19, 45, 130, 322, 858, 961
BstMBI	GATC	6 cut(s)	16, 42, 127, 319, 855, 958
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 28, 82, 425, 538, 547, 795, 1046
BstNI	CCWGG	2 cut(s)	8, 559
BstSCI	CCNGG	2 cut(s)	6, 557
BstV1I	GCAGC	3 cut(s)	206, 236, 1052
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	2 cut(s)	689, 780
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	6 cut(s)	5, 85, 468, 648, 681, 951
BtgI	CCRYGG	1 cut(s)	987
BtsCI	GGATG	4 cut(s)	357, 621, 988, 1051
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	7 cut(s)	217, 458, 470, 683, 715, 796, 924
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	4 cut(s)	4, 206, 647, 950
CseI	GACGC	1 cut(s)	1013
CsiI	ACCWGGT	1 cut(s)	557
Csp6I	GTAC	4 cut(s)	280, 445, 658, 826
CviAII	CATG	6 cut(s)	188, 488, 655, 670, 988, 1008
CviQI	GTAC	4 cut(s)	280, 445, 658, 826
DdeI	CTNAG	2 cut(s)	238, 528
DpnI	GATC	6 cut(s)	18, 44, 129, 321, 857, 960
DpnII	GATC	6 cut(s)	16, 42, 127, 319, 855, 958
EaeI	YGGCCR	1 cut(s)	679
Ecl136II	GAGCTC	2 cut(s)	31, 172
Eco130I	CCWWGG	2 cut(s)	726, 987
Eco147I	AGGCCT	2 cut(s)	85, 468
Eco24I	GRGCYC	3 cut(s)	33, 174, 669
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	2 cut(s)	31, 172
Eco57I	CTGAAG	1 cut(s)	836
Eco72I	CACGTG	1 cut(s)	545
EcoICRI	GAGCTC	2 cut(s)	31, 172
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	6, 557
EcoT14I	CCWWGG	2 cut(s)	726, 987
EcoT22I	ATGCAT	1 cut(s)	346
EcoT38I	GRGCYC	3 cut(s)	33, 174, 669
ErhI	CCWWGG	2 cut(s)	726, 987
FaeI	CATG	6 cut(s)	191, 491, 658, 673, 991, 1011
FalI	AAGNNNNNCTT	4 cut(s)	269, 301, 582, 614
FatI	CATG	6 cut(s)	187, 487, 654, 669, 987, 1007
FauNDI	CATATG	1 cut(s)	779
Fnu4HI	GCNGC	3 cut(s)	220, 250, 1041
FokI	GGATG	4 cut(s)	344, 628, 995, 1038
FriOI	GRGCYC	3 cut(s)	33, 174, 669
Fsp4HI	GCNGC	3 cut(s)	220, 250, 1041
FspBI	CTAG	4 cut(s)	216, 324, 752, 977
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	3 cut(s)	220, 250, 1041
GsaI	CCCAGC	1 cut(s)	653
HaeIII	GGCC	6 cut(s)	5, 85, 468, 648, 681, 951
HapII	CCGG	1 cut(s)	1046
HgaI	GACGC	1 cut(s)	1013
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	6 cut(s)	191, 491, 658, 673, 991, 1011
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	236, 526, 619, 811
HpaII	CCGG	1 cut(s)	1046
HphI	GGTGA	3 cut(s)	280, 686, 742
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	362, 816, 972
Hpy188III	TCNNGA	3 cut(s)	46, 55, 509
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	416, 458
HpyCH4III	ACNGT	2 cut(s)	182, 901
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	6 cut(s)	22, 118, 222, 344, 419, 894
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 28, 82, 425, 538, 547, 795, 1046
HpyF3I	CTNAG	2 cut(s)	238, 528
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	6 cut(s)	191, 491, 658, 673, 991, 1011
HspAI	GCGC	1 cut(s)	550
KpnI	GGTACC	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	16, 42, 127, 319, 855, 958
LmnI	GCTCC	4 cut(s)	73, 425, 637, 1048
Lsp1109I	GCAGC	3 cut(s)	206, 236, 1052
LweI	GCATC	3 cut(s)	508, 559, 973
MabI	ACCWGGT	1 cut(s)	557
MaeI	CTAG	4 cut(s)	216, 324, 752, 977
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	2 cut(s)	182, 991
MalI	GATC	6 cut(s)	18, 44, 129, 321, 857, 960
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	6 cut(s)	16, 42, 127, 319, 855, 958
MboII	GAAGA	3 cut(s)	277, 829, 860
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	3 cut(s)	33, 174, 669
MlsI	TGGCCA	1 cut(s)	681
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	2 cut(s)	230, 520
MnlI	CCTC	3 cut(s)	75, 116, 142
Mox20I	TGGCCA	1 cut(s)	681
Mph1103I	ATGCAT	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	3 cut(s)	630, 759, 1065
MslI	CAYNNNNRTG	3 cut(s)	113, 778, 1056
Msp20I	TGGCCA	1 cut(s)	681
MspI	CCGG	1 cut(s)	1046
MspR9I	CCNGG	2 cut(s)	8, 559
MvaI	CCWGG	2 cut(s)	8, 559
MwoI	GCNNNNNNNGC	8 cut(s)	11, 28, 82, 425, 538, 547, 795, 1046
NcoI	CCATGG	1 cut(s)	987
NdeI	CATATG	1 cut(s)	779
NdeII	GATC	6 cut(s)	16, 42, 127, 319, 855, 958
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	6 cut(s)	191, 491, 658, 673, 991, 1011
NlaIV	GGNNCC	6 cut(s)	59, 150, 207, 321, 446, 595
NmeAIII	GCCGAG	1 cut(s)	927
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	346
PceI	AGGCCT	2 cut(s)	85, 468
PfeI	GAWTC	2 cut(s)	619, 811
PflFI	GACNNNGTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	221, 251, 1042
PleI	GAGTC	2 cut(s)	230, 520
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
PpsI	GAGTC	2 cut(s)	230, 520
Ppu21I	YACGTR	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	206
Psp124BI	GAGCTC	2 cut(s)	33, 174
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	6, 557
PspCI	CACGTG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	2 cut(s)	6, 557
PspN4I	GGNNCC	6 cut(s)	59, 150, 207, 321, 446, 595
PspPI	GGNCC	4 cut(s)	4, 206, 647, 950
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	4 cut(s)	281, 446, 659, 827
RsaNI	GTAC	4 cut(s)	280, 445, 658, 826
RseI	CAYNNNNRTG	3 cut(s)	113, 778, 1056
SacI	GAGCTC	2 cut(s)	33, 174
SaqAI	TTAA	3 cut(s)	630, 759, 1065
SatI	GCNGC	3 cut(s)	220, 250, 1041
Sau3AI	GATC	6 cut(s)	16, 42, 127, 319, 855, 958
Sau96I	GGNCC	4 cut(s)	4, 206, 647, 950
SchI	GAGTC	2 cut(s)	230, 520
ScrFI	CCNGG	2 cut(s)	8, 559
SduI	GDGCHC	3 cut(s)	33, 174, 669
SexAI	ACCWGGT	1 cut(s)	557
SfaNI	GCATC	3 cut(s)	508, 559, 973
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	3 cut(s)	113, 778, 1056
SseBI	AGGCCT	2 cut(s)	85, 468
SsiI	CCGC	2 cut(s)	428, 477
SspMI	CTAG	4 cut(s)	216, 324, 752, 977
SstI	GAGCTC	2 cut(s)	33, 174
StuI	AGGCCT	2 cut(s)	85, 468
StyD4I	CCNGG	2 cut(s)	6, 557
StyI	CCWWGG	2 cut(s)	726, 987
TaaI	ACNGT	2 cut(s)	182, 901
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	2 cut(s)	33, 162
TatI	WGTACW	3 cut(s)	279, 657, 825
TfiI	GAWTC	2 cut(s)	619, 811
Tru1I	TTAA	3 cut(s)	630, 759, 1065
Tru9I	TTAA	3 cut(s)	630, 759, 1065
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	3 cut(s)	219, 249, 1040
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	632
Tth111I	GACNNNGTC	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	206
XspI	CTAG	4 cut(s)	216, 324, 752, 977
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.