Rh7CG109400

UDP-arabinopyranose mutase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014935
Physical Location & Seq
Forward (+)
8456702 .. 8459160
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG109400.1

Sequence Viewer

Length: 1086 bp
ATGGCCCTGGTAGCTGATCTGCAAGACGAGCTCGACATTGTGATCCCGACTATCAGGAACCTTGATTTCTTGGAGCAATGGAGGCCTTTCTTTCAACCCTACCACCTCATCATCGTGCAAGACGGCGATCCCTCCAATGCTATTCGGGTTCCTAACGGCTTCGACTACGAGCTCTATAACCGTGATCATGTCAACAAAGTCTTGGGTCCTACGGCTAGCTGCATTTCTTTCAAAGACTCAGCTTGTCGCTGCTTTGGTTTCTTGGTGTCCAAGAAAAAGTACATCTTCACCATTGATGATGACTGCTTTGTGGCAAAGGATCCTAGTGGCAAAGAGATAAATGCATTGGCACAGCACATCCGAAACCTGCTCAAACCATCAACTCCATTGTTCTTCAACACACTCTATGACCCGTTTGCAGAAGGAGCGGACTTTGTTCGCGGGTACCCATTTAGCTTGCGAGAAGGCCTGCCCACCGCTATTTCTCATGGTCTTTGGCTCAACATTCCTGACTACGATGCCCCGACTCAGCTTGTCAAGCCACGTGAGCGCAACACCAGTTCAAGTAGGTATGTTGATGCTGTGATGACAATCCCCAAAGGCACCCTTTTCCCAATGTGTGGGATGAATCTGGCTTTTGACAGGGAGCTGATAGGCCCAGCCATGTACTTTGGGCTCATGGGTGATGGCCAGCCCATTGGCAGATATGATGATATGTGGGCTGGCTGGTGTGCCAAGGTGATATGTGACCATTTGGGGCTAGGTGTTAAGACAGGACTGCCATACATATGGCATAGCAAGGCAAGCAACCCATTTGTGAATCTGAAGAAAGAGTACAAAGGCATTTACTGGCAGGAAGATATGATCCCATTTTTCCAGTCCATCATTCTCCCAAAAGAGTGCAAAACTGTTCAACAATGCTACATTATGCTTGCCAAGAGTGTCAAGGAAAAACTCGGCCCAGTTGATCCTTACTTTCAGAAACTAGGGGATGCCATGGTTACTTGGATTGACGCATGGAATGAGCTGAACCCACCACCACAAACAGCAGCTCCGGCTCATCCAAATGGTGTTAAGAAAAACTAA

Protein Analysis

361

Amino Acids

40.86

Weight (kDa)

6.18

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 8 - 344 4.8e-175 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50750
fragaria_vesca FvH4_5g08630 FvH4_5g08630
malus_domestica MD14G1154400.v1.1
prunus_persica Prupe.5G148600_v2.0.a1
pyrus_communis pycom06g12960
rosa_chinensis RchiOBHm_Chr7g0189771
rosa_laevigata RLG00000004592
rosa_multiflora Rmu_sc0014337.1_g000001 Rmu_sc0029387.1_g000001
rosa_roxburghii Rroxscaffold_3G00265180
rosa_rugosa Rorug06G0499800 Rorug06G0499800
rosa_samantha Rh7AG104800 Rh7CG109400
rosa_wichuraiana Rw7G009070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
Acc65I GGTACC 1 cut(s) 444
AccB1I GGYRCC 2 cut(s) 444, 602
AccB7I CCANNNNNTGG 1 cut(s) 620
AccBSI CCGCTC 1 cut(s) 428
AccII CGCG 1 cut(s) 441
AciI CCGC 3 cut(s) 428, 441, 477
AclWI GGATC 6 cut(s) 37, 122, 314, 327, 859, 962
AcoI YGGCCR 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 845
AcvI CACGTG 1 cut(s) 545
AfaI GTAC 4 cut(s) 281, 446, 668, 836
AfiI CCNNNNNNNGG 1 cut(s) 620
AgsI TTSAA 5 cut(s) 95, 232, 397, 564, 914
AjnI CCWGG 1 cut(s) 6
Alw21I GWGCWC 2 cut(s) 33, 174
AlwI GGATC 6 cut(s) 37, 122, 314, 327, 859, 962
AoxI GGCC 6 cut(s) 3, 83, 466, 655, 688, 958
ApeKI GCWGC 3 cut(s) 219, 249, 1049
Asp718I GGTACC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 4 cut(s) 4, 206, 656, 959
AsuHPI GGTGA 3 cut(s) 280, 695, 751
AsuNHI GCTAGC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 690
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 2 cut(s) 444, 602
BanII GRGCYC 3 cut(s) 33, 174, 678
BarI GAAGNNNNNNTAC 2 cut(s) 818, 850
BbrPI CACGTG 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 33, 174
BbvI GCAGC 3 cut(s) 206, 236, 1061
BccI CCATC 3 cut(s) 385, 680, 890
BceAI ACGGC 3 cut(s) 139, 172, 228
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 1 cut(s) 184
BfaI CTAG 4 cut(s) 216, 324, 761, 986
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 220, 250, 1050
BlsI GCNGC 3 cut(s) 221, 251, 1051
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 4 cut(s) 4, 206, 656, 959
BmiI GGNNCC 6 cut(s) 59, 150, 207, 321, 446, 604
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 956
BmsI GCATC 3 cut(s) 508, 568, 982
BmtI GCTAGC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 956
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 590
BsaJI CCNNGG 3 cut(s) 6, 735, 996
BsaXI ACNNNNNCTCC 2 cut(s) 1036, 1066
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 4 cut(s) 558, 854, 877, 962
Bse3DI GCAATG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 590
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 3 cut(s) 6, 735, 996
BseGI GGATG 4 cut(s) 357, 630, 997, 1060
BseJI GATNNNNATC 1 cut(s) 590
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 252, 542
BseNI ACTGG 4 cut(s) 558, 854, 877, 962
BseXI GCAGC 3 cut(s) 206, 236, 1061
BseYI CCCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 6 cut(s) 5, 85, 468, 657, 690, 960
BshNI GGYRCC 2 cut(s) 444, 602
BsiHKAI GWGCWC 2 cut(s) 33, 174
BsiSI CCGG 1 cut(s) 1055
BslI CCNNNNNNNGG 1 cut(s) 620
BsnI GGCC 6 cut(s) 5, 85, 468, 657, 690, 960
Bsp1286I GDGCHC 3 cut(s) 33, 174, 678
Bsp143I GATC 7 cut(s) 16, 42, 127, 184, 319, 864, 967
Bsp19I CCATGG 1 cut(s) 996
BspACI CCGC 3 cut(s) 428, 441, 477
BspANI GGCC 6 cut(s) 5, 85, 468, 657, 690, 960
BspCNI CTCAG 2 cut(s) 251, 541
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 6 cut(s) 59, 150, 207, 321, 446, 604
BspMI ACCTGC 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 219
BspPI GGATC 6 cut(s) 37, 122, 314, 327, 859, 962
BspT107I GGYRCC 2 cut(s) 444, 602
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 4 cut(s) 558, 854, 877, 962
BssECI CCNNGG 3 cut(s) 6, 735, 996
BssMI GATC 7 cut(s) 16, 42, 127, 184, 319, 864, 967
BssT1I CCWWGG 2 cut(s) 735, 996
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 182, 910
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 7 cut(s) 217, 458, 470, 692, 724, 805, 933
BstDEI CTNAG 2 cut(s) 238, 528
BstDSI CCRYGG 1 cut(s) 996
BstF5I GGATG 4 cut(s) 357, 630, 997, 1060
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 7 cut(s) 19, 45, 130, 187, 322, 867, 970
BstMBI GATC 7 cut(s) 16, 42, 127, 184, 319, 864, 967
BstMWI GCNNNNNNNGC 8 cut(s) 11, 28, 82, 425, 538, 547, 804, 1055
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 206, 236, 1061
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 2 cut(s) 698, 789
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 6 cut(s) 5, 85, 468, 657, 690, 960
BtgI CCRYGG 1 cut(s) 996
BtsCI GGATG 4 cut(s) 357, 630, 997, 1060
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 7 cut(s) 217, 458, 470, 692, 724, 805, 933
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 4 cut(s) 4, 206, 656, 959
CseI GACGC 1 cut(s) 1022
Csp6I GTAC 4 cut(s) 280, 445, 667, 835
CviAII CATG 6 cut(s) 188, 488, 664, 679, 997, 1017
CviQI GTAC 4 cut(s) 280, 445, 667, 835
DdeI CTNAG 2 cut(s) 238, 528
DpnI GATC 7 cut(s) 18, 44, 129, 186, 321, 866, 969
DpnII GATC 7 cut(s) 16, 42, 127, 184, 319, 864, 967
EaeI YGGCCR 1 cut(s) 688
Ecl136II GAGCTC 2 cut(s) 31, 172
Eco130I CCWWGG 2 cut(s) 735, 996
Eco147I AGGCCT 2 cut(s) 85, 468
Eco24I GRGCYC 3 cut(s) 33, 174, 678
Eco47I GGWCC 1 cut(s) 206
Eco53kI GAGCTC 2 cut(s) 31, 172
Eco57I CTGAAG 1 cut(s) 845
Eco72I CACGTG 1 cut(s) 545
EcoICRI GAGCTC 2 cut(s) 31, 172
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 735, 996
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 3 cut(s) 33, 174, 678
ErhI CCWWGG 2 cut(s) 735, 996
FaeI CATG 6 cut(s) 191, 491, 667, 682, 1000, 1020
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 591, 623
FatI CATG 6 cut(s) 187, 487, 663, 678, 996, 1016
FauI CCCGC 1 cut(s) 434
FauNDI CATATG 1 cut(s) 788
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 220, 250, 1050
FokI GGATG 4 cut(s) 344, 637, 1004, 1047
FriOI GRGCYC 3 cut(s) 33, 174, 678
Fsp4HI GCNGC 3 cut(s) 220, 250, 1050
FspBI CTAG 4 cut(s) 216, 324, 761, 986
GlaI GCGC 1 cut(s) 551
GluI GCNGC 3 cut(s) 220, 250, 1050
GsaI CCCAGC 1 cut(s) 662
HaeIII GGCC 6 cut(s) 5, 85, 468, 657, 690, 960
HapII CCGG 1 cut(s) 1055
HgaI GACGC 1 cut(s) 1022
HhaI GCGC 1 cut(s) 552
Hin1II CATG 6 cut(s) 191, 491, 667, 682, 1000, 1020
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 4 cut(s) 236, 526, 628, 820
HpaII CCGG 1 cut(s) 1055
HphI GGTGA 3 cut(s) 280, 695, 751
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 362, 825, 981
Hpy188III TCNNGA 3 cut(s) 46, 55, 509
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 416, 458
HpyCH4III ACNGT 2 cut(s) 182, 910
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 6 cut(s) 22, 118, 222, 344, 419, 903
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 28, 82, 425, 538, 547, 804, 1055
HpyF3I CTNAG 2 cut(s) 238, 528
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 6 cut(s) 191, 491, 667, 682, 1000, 1020
HspAI GCGC 1 cut(s) 550
KpnI GGTACC 1 cut(s) 448
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 7 cut(s) 16, 42, 127, 184, 319, 864, 967
LmnI GCTCC 4 cut(s) 73, 425, 646, 1057
Lsp1109I GCAGC 3 cut(s) 206, 236, 1061
LweI GCATC 3 cut(s) 508, 568, 982
MaeI CTAG 4 cut(s) 216, 324, 761, 986
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 746, 1000
MalI GATC 7 cut(s) 18, 44, 129, 186, 321, 866, 969
MbiI CCGCTC 1 cut(s) 428
MboI GATC 7 cut(s) 16, 42, 127, 184, 319, 864, 967
MboII GAAGA 4 cut(s) 277, 385, 838, 869
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 3 cut(s) 33, 174, 678
MlsI TGGCCA 1 cut(s) 690
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 2 cut(s) 230, 520
MnlI CCTC 3 cut(s) 75, 116, 142
Mox20I TGGCCA 1 cut(s) 690
Mph1103I ATGCAT 1 cut(s) 346
MscI TGGCCA 1 cut(s) 690
MseI TTAA 2 cut(s) 768, 1074
MslI CAYNNNNRTG 3 cut(s) 113, 787, 1065
Msp20I TGGCCA 1 cut(s) 690
MspI CCGG 1 cut(s) 1055
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 8 cut(s) 11, 28, 82, 425, 538, 547, 804, 1055
NcoI CCATGG 1 cut(s) 996
NdeI CATATG 1 cut(s) 788
NdeII GATC 7 cut(s) 16, 42, 127, 184, 319, 864, 967
NheI GCTAGC 1 cut(s) 215
NlaIII CATG 6 cut(s) 191, 491, 667, 682, 1000, 1020
NlaIV GGNNCC 6 cut(s) 59, 150, 207, 321, 446, 604
NmeAIII GCCGAG 1 cut(s) 936
NmuCI GTSAC 1 cut(s) 746
NsiI ATGCAT 1 cut(s) 346
PceI AGGCCT 2 cut(s) 85, 468
PfeI GAWTC 2 cut(s) 628, 820
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 3 cut(s) 221, 251, 1051
PleI GAGTC 2 cut(s) 230, 520
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
PpsI GAGTC 2 cut(s) 230, 520
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 1 cut(s) 206
Psp124BI GAGCTC 2 cut(s) 33, 174
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 6
PspCI CACGTG 1 cut(s) 545
PspFI CCCAGC 1 cut(s) 658
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 6 cut(s) 59, 150, 207, 321, 446, 604
PspPI GGNCC 4 cut(s) 4, 206, 656, 959
PspPPI RGGWCCY 1 cut(s) 206
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 4 cut(s) 281, 446, 668, 836
RsaNI GTAC 4 cut(s) 280, 445, 667, 835
RseI CAYNNNNRTG 3 cut(s) 113, 787, 1065
SacI GAGCTC 2 cut(s) 33, 174
SaqAI TTAA 2 cut(s) 768, 1074
SatI GCNGC 3 cut(s) 220, 250, 1050
Sau3AI GATC 7 cut(s) 16, 42, 127, 184, 319, 864, 967
Sau96I GGNCC 4 cut(s) 4, 206, 656, 959
SchI GAGTC 2 cut(s) 230, 520
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 3 cut(s) 33, 174, 678
SfaNI GCATC 3 cut(s) 508, 568, 982
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 3 cut(s) 113, 787, 1065
SseBI AGGCCT 2 cut(s) 85, 468
SsiI CCGC 3 cut(s) 428, 441, 477
SspMI CTAG 4 cut(s) 216, 324, 761, 986
SstI GAGCTC 2 cut(s) 33, 174
StuI AGGCCT 2 cut(s) 85, 468
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 735, 996
TaaI ACNGT 2 cut(s) 182, 910
TaiI ACGT 1 cut(s) 547
TaqI TCGA 2 cut(s) 33, 162
TatI WGTACW 3 cut(s) 279, 666, 834
TfiI GAWTC 2 cut(s) 628, 820
Tru1I TTAA 2 cut(s) 768, 1074
Tru9I TTAA 2 cut(s) 768, 1074
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 3 cut(s) 219, 249, 1049
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 1 cut(s) 641
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 4 cut(s) 216, 324, 761, 986
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.