RchiOBHm_Chr7g0189771

UDP-arabinopyranose mutase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014935
Physical Location & Seq
Forward (+)
9047183 .. 9049205
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16949

Sequence Viewer

Length: 1077 bp
ATGGCCCTGGTAGCTGATCTGCAAGACGAGCTCGACATTGTGATCCCGACTATCAGGAACCTTGATTTCTTGGAGCAATGGAGGCCTTTCTTTCAACCCTACCACCTCATCATCGTGCAAGACGGCGATCCCTCCAATGCTATTCGGGTTCCTAACGGCTTCGACTACGAGCTCTATAACCGTGACCATGTCAACAAAGTGTTGGGTCCTACGGCTAGCTGCATTTCTTTCAAAGACTCAGCTTGTCGCTGCTTTGGTTTCTTGGTGTCCAAGAAAAAGTACATCTTCACCATTGATGATGACTGCTTTGTGGCAAAGGATCCTAGTGGCAAAGAGATAAATGCATTGGCACAGCACATCCGAAACCTGCTCAAACCATCAACTCCATTGTTATTCAACACACTCTATGACCCGTTTGCAGAAGGAGCGGACTTTGTTCGTGGGTACCCATTTAGCTTGCGAGAAGGCCTGCCCACCGCTATTTCTCATGGTCTTTGGCTCAACATTCCTGACTACGATGCCCCGACTCAGCTTGTCAAGCCACGTGAGCGCAACACCAGGTATGTTGATGCTGTGATGACAATCCCCAAAGGCACCCTTTTCCCAATGTGTGGGATGAATCTGGCTTTTAACAGGGAGCTGATAGGCCCAGCCATGTACTTTGGGCTCATGGGTGATGGCCAGCCCATTGGCAGATATGATGATATGTGGGCTGGCTGGTGTGCCAAGGTGATATGTGACCATTTGGGGCTAGGTGTTAAGACAGGACTGCCATACATATGGCATAGCAAGGCAAGCAACCCATTTGTGAATCTGAAGAAAGAGTACAAAGGCATTTACTGGCAGGAAGATATGATCCCATTTTTCCAGTCCATCATTCTCCCAAAAGAGTGCAAAACTGTTCAACAATGCTACATTATGCTTGCCAAGAGTGTCAAGGAAAAACTCGGCCCAGTTGATCCTTACTTTCAGAAACTAGGGGATGCCATGGTTACTTGGATTGACGCATGGAATGAGCTGAACCCACCACCACAAACAGCAGCTCCGGCTCATCCAAATGGTGTTAAGAAAAACTAA

Protein Analysis

358

Amino Acids

40.56

Weight (kDa)

6.39

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 8 - 341 1.9e-176 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50750
fragaria_vesca FvH4_5g08630 FvH4_5g08630
malus_domestica MD14G1154400.v1.1
prunus_persica Prupe.5G148600_v2.0.a1
pyrus_communis pycom06g12960
rosa_chinensis RchiOBHm_Chr7g0189771
rosa_laevigata RLG00000004592
rosa_multiflora Rmu_sc0014337.1_g000001 Rmu_sc0029387.1_g000001
rosa_roxburghii Rroxscaffold_3G00265180
rosa_rugosa Rorug06G0499800 Rorug06G0499800
rosa_samantha Rh7AG104800 Rh7CG109400
rosa_wichuraiana Rw7G009070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
Acc65I GGTACC 1 cut(s) 444
AccB1I GGYRCC 2 cut(s) 444, 593
AccB7I CCANNNNNTGG 1 cut(s) 611
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 2 cut(s) 428, 477
AclWI GGATC 6 cut(s) 37, 122, 314, 327, 850, 953
AcoI YGGCCR 1 cut(s) 679
AcuI CTGAAG 1 cut(s) 836
AcvI CACGTG 1 cut(s) 545
AfaI GTAC 4 cut(s) 281, 446, 659, 827
AfiI CCNNNNNNNGG 1 cut(s) 611
AgsI TTSAA 4 cut(s) 95, 232, 397, 905
AjnI CCWGG 2 cut(s) 6, 557
Alw21I GWGCWC 2 cut(s) 33, 174
AlwI GGATC 6 cut(s) 37, 122, 314, 327, 850, 953
AoxI GGCC 6 cut(s) 3, 83, 466, 646, 679, 949
ApeKI GCWGC 3 cut(s) 219, 249, 1040
Asp718I GGTACC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 4 cut(s) 4, 206, 647, 950
AsuHPI GGTGA 3 cut(s) 280, 686, 742
AsuNHI GCTAGC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 681
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 2 cut(s) 444, 593
BanII GRGCYC 3 cut(s) 33, 174, 669
BarI GAAGNNNNNNTAC 2 cut(s) 809, 841
BbrPI CACGTG 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 33, 174
BbvI GCAGC 3 cut(s) 206, 236, 1052
BccI CCATC 3 cut(s) 385, 671, 881
BceAI ACGGC 3 cut(s) 139, 172, 228
BciT130I CCWGG 2 cut(s) 8, 559
BfaI CTAG 4 cut(s) 216, 324, 752, 977
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 220, 250, 1041
BlsI GCNGC 3 cut(s) 221, 251, 1042
Bme1390I CCNGG 2 cut(s) 8, 559
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 4 cut(s) 4, 206, 647, 950
BmiI GGNNCC 6 cut(s) 59, 150, 207, 321, 446, 595
BmrFI CCNGG 2 cut(s) 8, 559
BmrI ACTGGG 1 cut(s) 947
BmsI GCATC 3 cut(s) 508, 559, 973
BmtI GCTAGC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 947
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 581
BsaJI CCNNGG 3 cut(s) 6, 726, 987
BsaXI ACNNNNNCTCC 2 cut(s) 1027, 1057
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 3 cut(s) 845, 868, 953
Bse3DI GCAATG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 2 cut(s) 8, 559
BseDI CCNNGG 3 cut(s) 6, 726, 987
BseGI GGATG 4 cut(s) 357, 621, 988, 1051
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 252, 542
BseNI ACTGG 3 cut(s) 845, 868, 953
BseXI GCAGC 3 cut(s) 206, 236, 1052
BseYI CCCAGC 1 cut(s) 649
BshFI GGCC 6 cut(s) 5, 85, 468, 648, 681, 951
BshNI GGYRCC 2 cut(s) 444, 593
BsiHKAI GWGCWC 2 cut(s) 33, 174
BsiSI CCGG 1 cut(s) 1046
BslI CCNNNNNNNGG 1 cut(s) 611
BsnI GGCC 6 cut(s) 5, 85, 468, 648, 681, 951
Bsp1286I GDGCHC 3 cut(s) 33, 174, 669
Bsp143I GATC 6 cut(s) 16, 42, 127, 319, 855, 958
Bsp19I CCATGG 1 cut(s) 987
BspACI CCGC 2 cut(s) 428, 477
BspANI GGCC 6 cut(s) 5, 85, 468, 648, 681, 951
BspCNI CTCAG 2 cut(s) 251, 541
BspLI GGNNCC 6 cut(s) 59, 150, 207, 321, 446, 595
BspMI ACCTGC 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 219
BspPI GGATC 6 cut(s) 37, 122, 314, 327, 850, 953
BspT107I GGYRCC 2 cut(s) 444, 593
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 3 cut(s) 845, 868, 953
BssECI CCNNGG 3 cut(s) 6, 726, 987
BssMI GATC 6 cut(s) 16, 42, 127, 319, 855, 958
BssT1I CCWWGG 2 cut(s) 726, 987
Bst2UI CCWGG 2 cut(s) 8, 559
Bst4CI ACNGT 2 cut(s) 182, 901
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 7 cut(s) 217, 458, 470, 683, 715, 796, 924
BstDEI CTNAG 2 cut(s) 238, 528
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 4 cut(s) 357, 621, 988, 1051
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 6 cut(s) 19, 45, 130, 322, 858, 961
BstMBI GATC 6 cut(s) 16, 42, 127, 319, 855, 958
BstMWI GCNNNNNNNGC 8 cut(s) 11, 28, 82, 425, 538, 547, 795, 1046
BstNI CCWGG 2 cut(s) 8, 559
BstSCI CCNGG 2 cut(s) 6, 557
BstV1I GCAGC 3 cut(s) 206, 236, 1052
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 2 cut(s) 689, 780
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 6 cut(s) 5, 85, 468, 648, 681, 951
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 4 cut(s) 357, 621, 988, 1051
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 7 cut(s) 217, 458, 470, 683, 715, 796, 924
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 4 cut(s) 4, 206, 647, 950
CseI GACGC 1 cut(s) 1013
CsiI ACCWGGT 1 cut(s) 557
Csp6I GTAC 4 cut(s) 280, 445, 658, 826
CviAII CATG 6 cut(s) 188, 488, 655, 670, 988, 1008
CviQI GTAC 4 cut(s) 280, 445, 658, 826
DdeI CTNAG 2 cut(s) 238, 528
DpnI GATC 6 cut(s) 18, 44, 129, 321, 857, 960
DpnII GATC 6 cut(s) 16, 42, 127, 319, 855, 958
EaeI YGGCCR 1 cut(s) 679
Ecl136II GAGCTC 2 cut(s) 31, 172
Eco130I CCWWGG 2 cut(s) 726, 987
Eco147I AGGCCT 2 cut(s) 85, 468
Eco24I GRGCYC 3 cut(s) 33, 174, 669
Eco47I GGWCC 1 cut(s) 206
Eco53kI GAGCTC 2 cut(s) 31, 172
Eco57I CTGAAG 1 cut(s) 836
Eco72I CACGTG 1 cut(s) 545
EcoICRI GAGCTC 2 cut(s) 31, 172
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 2 cut(s) 6, 557
EcoT14I CCWWGG 2 cut(s) 726, 987
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 3 cut(s) 33, 174, 669
ErhI CCWWGG 2 cut(s) 726, 987
FaeI CATG 6 cut(s) 191, 491, 658, 673, 991, 1011
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 582, 614
FatI CATG 6 cut(s) 187, 487, 654, 669, 987, 1007
FauNDI CATATG 1 cut(s) 779
Fnu4HI GCNGC 3 cut(s) 220, 250, 1041
FokI GGATG 4 cut(s) 344, 628, 995, 1038
FriOI GRGCYC 3 cut(s) 33, 174, 669
Fsp4HI GCNGC 3 cut(s) 220, 250, 1041
FspBI CTAG 4 cut(s) 216, 324, 752, 977
GlaI GCGC 1 cut(s) 551
GluI GCNGC 3 cut(s) 220, 250, 1041
GsaI CCCAGC 1 cut(s) 653
HaeIII GGCC 6 cut(s) 5, 85, 468, 648, 681, 951
HapII CCGG 1 cut(s) 1046
HgaI GACGC 1 cut(s) 1013
HhaI GCGC 1 cut(s) 552
Hin1II CATG 6 cut(s) 191, 491, 658, 673, 991, 1011
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 4 cut(s) 236, 526, 619, 811
HpaII CCGG 1 cut(s) 1046
HphI GGTGA 3 cut(s) 280, 686, 742
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 362, 816, 972
Hpy188III TCNNGA 3 cut(s) 46, 55, 509
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 416, 458
HpyCH4III ACNGT 2 cut(s) 182, 901
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 6 cut(s) 22, 118, 222, 344, 419, 894
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 28, 82, 425, 538, 547, 795, 1046
HpyF3I CTNAG 2 cut(s) 238, 528
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 6 cut(s) 191, 491, 658, 673, 991, 1011
HspAI GCGC 1 cut(s) 550
KpnI GGTACC 1 cut(s) 448
Kzo9I GATC 6 cut(s) 16, 42, 127, 319, 855, 958
LmnI GCTCC 4 cut(s) 73, 425, 637, 1048
Lsp1109I GCAGC 3 cut(s) 206, 236, 1052
LweI GCATC 3 cut(s) 508, 559, 973
MabI ACCWGGT 1 cut(s) 557
MaeI CTAG 4 cut(s) 216, 324, 752, 977
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 3 cut(s) 182, 737, 991
MalI GATC 6 cut(s) 18, 44, 129, 321, 857, 960
MbiI CCGCTC 1 cut(s) 428
MboI GATC 6 cut(s) 16, 42, 127, 319, 855, 958
MboII GAAGA 3 cut(s) 277, 829, 860
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 3 cut(s) 33, 174, 669
MlsI TGGCCA 1 cut(s) 681
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 2 cut(s) 230, 520
MnlI CCTC 3 cut(s) 75, 116, 142
Mox20I TGGCCA 1 cut(s) 681
Mph1103I ATGCAT 1 cut(s) 346
MscI TGGCCA 1 cut(s) 681
MseI TTAA 3 cut(s) 630, 759, 1065
MslI CAYNNNNRTG 3 cut(s) 113, 778, 1056
Msp20I TGGCCA 1 cut(s) 681
MspI CCGG 1 cut(s) 1046
MspR9I CCNGG 2 cut(s) 8, 559
MvaI CCWGG 2 cut(s) 8, 559
MwoI GCNNNNNNNGC 8 cut(s) 11, 28, 82, 425, 538, 547, 795, 1046
NcoI CCATGG 1 cut(s) 987
NdeI CATATG 1 cut(s) 779
NdeII GATC 6 cut(s) 16, 42, 127, 319, 855, 958
NheI GCTAGC 1 cut(s) 215
NlaIII CATG 6 cut(s) 191, 491, 658, 673, 991, 1011
NlaIV GGNNCC 6 cut(s) 59, 150, 207, 321, 446, 595
NmeAIII GCCGAG 1 cut(s) 927
NmuCI GTSAC 2 cut(s) 182, 737
NsiI ATGCAT 1 cut(s) 346
PceI AGGCCT 2 cut(s) 85, 468
PfeI GAWTC 2 cut(s) 619, 811
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 611
PkrI GCNGC 3 cut(s) 221, 251, 1042
PleI GAGTC 2 cut(s) 230, 520
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
PpsI GAGTC 2 cut(s) 230, 520
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 1 cut(s) 206
Psp124BI GAGCTC 2 cut(s) 33, 174
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 6, 557
PspCI CACGTG 1 cut(s) 545
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 2 cut(s) 6, 557
PspN4I GGNNCC 6 cut(s) 59, 150, 207, 321, 446, 595
PspPI GGNCC 4 cut(s) 4, 206, 647, 950
PspPPI RGGWCCY 1 cut(s) 206
PsuI RGATCY 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 4 cut(s) 281, 446, 659, 827
RsaNI GTAC 4 cut(s) 280, 445, 658, 826
RseI CAYNNNNRTG 3 cut(s) 113, 778, 1056
SacI GAGCTC 2 cut(s) 33, 174
SaqAI TTAA 3 cut(s) 630, 759, 1065
SatI GCNGC 3 cut(s) 220, 250, 1041
Sau3AI GATC 6 cut(s) 16, 42, 127, 319, 855, 958
Sau96I GGNCC 4 cut(s) 4, 206, 647, 950
SchI GAGTC 2 cut(s) 230, 520
ScrFI CCNGG 2 cut(s) 8, 559
SduI GDGCHC 3 cut(s) 33, 174, 669
SexAI ACCWGGT 1 cut(s) 557
SfaNI GCATC 3 cut(s) 508, 559, 973
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 3 cut(s) 113, 778, 1056
SseBI AGGCCT 2 cut(s) 85, 468
SsiI CCGC 2 cut(s) 428, 477
SspMI CTAG 4 cut(s) 216, 324, 752, 977
SstI GAGCTC 2 cut(s) 33, 174
StuI AGGCCT 2 cut(s) 85, 468
StyD4I CCNGG 2 cut(s) 6, 557
StyI CCWWGG 2 cut(s) 726, 987
TaaI ACNGT 2 cut(s) 182, 901
TaiI ACGT 1 cut(s) 547
TaqI TCGA 2 cut(s) 33, 162
TatI WGTACW 3 cut(s) 279, 657, 825
TfiI GAWTC 2 cut(s) 619, 811
Tru1I TTAA 3 cut(s) 630, 759, 1065
Tru9I TTAA 3 cut(s) 630, 759, 1065
TseFI GTSAC 2 cut(s) 182, 737
TseI GCWGC 3 cut(s) 219, 249, 1040
Tsp45I GTSAC 2 cut(s) 182, 737
TspDTI ATGAA 1 cut(s) 632
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 4 cut(s) 216, 324, 752, 977
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.