Rroxscaffold_3G00265180

UDP-arabinopyranose mutase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014935
Physical Location & Seq
Reverse (-)
58601548 .. 58603354
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265180.1

Sequence Viewer

Length: 1086 bp
ATGGCCCTGGTAGCTGATCTGAAAGACGAGCTCGACATTGTGATCCCGACTATCAGGAACCTTGATTTCTTGGAGCAATGGAGGCCTTTCTTTCAACCCTACCACCTCATCATCGTACAAGACGGCGATCCCTCCAATGCTATTCGGGTTCCTAACGGCTTCGACTACGAGCTCTATAACCGTGACCGTGTCAACAAGGTCTTGGGTCCTAAGGCTAGCTGCATTTCTTTCAAAGACTCAGCTTGTCGCTGCTTTGGTTTCTTGGTGTCCAAGAAAAAGTACATCTTCACCATCGATGACGACTGCTTTGTGGCAAAGGATCCTAGTGGGAAAGAGATAAATGCATTGGCACAGCACATCCGAAACCTGCTTAAATCATCAACTCCACTGTTCTTCAACACACTCTATGACCCGTTTGCAGAAGGAGAGGACTTTGTTCGCGGCTACCCATTTAGCTTGCGGGAAGGCGCGCCCACCGCTATTTCTCATGGTCTTTGGCTCAACATTCCTGACTACGATGCCCCGACTCAGCTTGTCAAGCCACGTGAGCGCAACACCAGTTTAAGTATGTATGTTGATGCTGTGATGACAATCCCCAAAGGCACCCTTTTCCCAATGTGTGGGATGAATCTGGCTTTTGACAGGGAGCTGATAGGCCCAGCCATGTACTTTGGGCTCATGGGTGATGGCCAGCCCATTGGCCGATATGATGATATGTGGGCTGGCTGGTGTGCCAAGGTGATATGTGACCATTTGGGGCTAGGGGTTAAGACAGGACTGCCATACATATGGCATAGCAAGGCAAGCAACCCATTTGTGAATCTGAAGAAAGAGTACAAAGGCATTTACTGGCAGGAAGATATGATCCCATTTTTCCAGTCCATCATTCTCCCAAAAGAGTGCAAAACTGTTCAGCAATGCTACATTGTGCTTGCCAAGAGTGTCAAGGAAAAACTCGGCCCAGTTGATCCTTACTTTCAGAAACTAGGGGATGCCATGGTTACTTGGATTGAAGCATGGAATGAGCTGAACCCACCACCACAGACAGAAGCTCCGGCTCATCCAAATGGTGTTAAGAAAAACTAA

Protein Analysis

361

Amino Acids

40.95

Weight (kDa)

6.11

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 8 - 344 8.4e-173 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50750
fragaria_vesca FvH4_5g08630 FvH4_5g08630
malus_domestica MD14G1154400.v1.1
prunus_persica Prupe.5G148600_v2.0.a1
pyrus_communis pycom06g12960
rosa_chinensis RchiOBHm_Chr7g0189771
rosa_laevigata RLG00000004592
rosa_multiflora Rmu_sc0014337.1_g000001 Rmu_sc0029387.1_g000001
rosa_roxburghii Rroxscaffold_3G00265180
rosa_rugosa Rorug06G0499800 Rorug06G0499800
rosa_samantha Rh7AG104800 Rh7CG109400
rosa_wichuraiana Rw7G009070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 620
AccII CGCG 2 cut(s) 441, 470
AciI CCGC 3 cut(s) 441, 460, 477
AclWI GGATC 6 cut(s) 37, 122, 314, 327, 859, 962
AcoI YGGCCR 2 cut(s) 688, 700
AcuI CTGAAG 1 cut(s) 845
AcvI CACGTG 1 cut(s) 545
AfaI GTAC 4 cut(s) 117, 281, 668, 836
AfiI CCNNNNNNNGG 1 cut(s) 620
AgsI TTSAA 4 cut(s) 95, 232, 397, 1013
AjnI CCWGG 1 cut(s) 6
Alw21I GWGCWC 2 cut(s) 33, 174
AlwI GGATC 6 cut(s) 37, 122, 314, 327, 859, 962
AoxI GGCC 6 cut(s) 3, 83, 655, 688, 700, 958
ApeKI GCWGC 2 cut(s) 219, 249
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AscI GGCGCGCC 1 cut(s) 468
AspLEI GCGC 3 cut(s) 470, 472, 552
AspS9I GGNCC 4 cut(s) 4, 206, 656, 959
AsuHPI GGTGA 3 cut(s) 280, 695, 751
AsuNHI GCTAGC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 210
BalI TGGCCA 1 cut(s) 690
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 3 cut(s) 33, 174, 678
BarI GAAGNNNNNNTAC 2 cut(s) 818, 850
BbrPI CACGTG 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 33, 174
BbvI GCAGC 2 cut(s) 206, 236
BccI CCATC 3 cut(s) 299, 680, 890
BceAI ACGGC 2 cut(s) 139, 172
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 4 cut(s) 216, 324, 761, 986
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 220, 250, 442
BlsI GCNGC 3 cut(s) 221, 251, 443
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 4 cut(s) 4, 206, 656, 959
BmiI GGNNCC 5 cut(s) 59, 150, 207, 321, 604
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 956
BmsI GCATC 3 cut(s) 508, 568, 982
BmtI GCTAGC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 956
Bsa29I ATCGAT 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 590
BsaJI CCNNGG 3 cut(s) 6, 735, 996
BsaXI ACNNNNNCTCC 2 cut(s) 1036, 1066
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 4 cut(s) 558, 854, 877, 962
Bse21I CCTNAGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 83, 923
Bse8I GATNNNNATC 1 cut(s) 590
BseBI CCWGG 1 cut(s) 8
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 6, 735, 996
BseGI GGATG 4 cut(s) 357, 630, 997, 1060
BseJI GATNNNNATC 1 cut(s) 590
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 2 cut(s) 83, 923
BseMII CTCAG 2 cut(s) 252, 542
BseNI ACTGG 4 cut(s) 558, 854, 877, 962
BsePI GCGCGC 1 cut(s) 468
BseXI GCAGC 2 cut(s) 206, 236
BseYI CCCAGC 1 cut(s) 658
Bsh1236I CGCG 2 cut(s) 441, 470
BshFI GGCC 6 cut(s) 5, 85, 657, 690, 702, 960
BshNI GGYRCC 1 cut(s) 602
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 33, 174
BsiSI CCGG 1 cut(s) 1055
BslI CCNNNNNNNGG 1 cut(s) 620
BsnI GGCC 6 cut(s) 5, 85, 657, 690, 702, 960
Bsp1286I GDGCHC 3 cut(s) 33, 174, 678
Bsp143I GATC 6 cut(s) 16, 42, 127, 319, 864, 967
Bsp19I CCATGG 1 cut(s) 996
BspACI CCGC 3 cut(s) 441, 460, 477
BspANI GGCC 6 cut(s) 5, 85, 657, 690, 702, 960
BspCNI CTCAG 2 cut(s) 251, 541
BspDI ATCGAT 1 cut(s) 294
BspFNI CGCG 2 cut(s) 441, 470
BspLI GGNNCC 5 cut(s) 59, 150, 207, 321, 604
BspMI ACCTGC 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 219
BspPI GGATC 6 cut(s) 37, 122, 314, 327, 859, 962
BspT107I GGYRCC 1 cut(s) 602
BsrDI GCAATG 2 cut(s) 83, 923
BsrI ACTGG 4 cut(s) 558, 854, 877, 962
BssECI CCNNGG 3 cut(s) 6, 735, 996
BssHII GCGCGC 1 cut(s) 468
BssMI GATC 6 cut(s) 16, 42, 127, 319, 864, 967
BssT1I CCWWGG 2 cut(s) 735, 996
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 4 cut(s) 182, 188, 390, 910
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 7 cut(s) 217, 458, 470, 692, 724, 805, 933
BstDEI CTNAG 3 cut(s) 210, 238, 528
BstDSI CCRYGG 1 cut(s) 996
BstF5I GGATG 4 cut(s) 357, 630, 997, 1060
BstFNI CGCG 2 cut(s) 441, 470
BstHHI GCGC 3 cut(s) 470, 472, 552
BstKTI GATC 6 cut(s) 19, 45, 130, 322, 867, 970
BstMBI GATC 6 cut(s) 16, 42, 127, 319, 864, 967
BstMWI GCNNNNNNNGC 6 cut(s) 11, 82, 476, 538, 547, 804
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstUI CGCG 2 cut(s) 441, 470
BstV1I GCAGC 2 cut(s) 206, 236
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 2 cut(s) 698, 789
BstYI RGATCY 1 cut(s) 319
Bsu15I ATCGAT 1 cut(s) 294
Bsu36I CCTNAGG 1 cut(s) 210
BsuRI GGCC 6 cut(s) 5, 85, 657, 690, 702, 960
BsuTUI ATCGAT 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 996
BtsCI GGATG 4 cut(s) 357, 630, 997, 1060
BtsIMutI CAGTG 1 cut(s) 386
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 7 cut(s) 217, 458, 470, 692, 724, 805, 933
CfoI GCGC 3 cut(s) 470, 472, 552
Cfr13I GGNCC 4 cut(s) 4, 206, 656, 959
ClaI ATCGAT 1 cut(s) 294
Csp6I GTAC 4 cut(s) 116, 280, 667, 835
CviAII CATG 5 cut(s) 488, 664, 679, 997, 1017
CviQI GTAC 4 cut(s) 116, 280, 667, 835
DdeI CTNAG 3 cut(s) 210, 238, 528
DpnI GATC 6 cut(s) 18, 44, 129, 321, 866, 969
DpnII GATC 6 cut(s) 16, 42, 127, 319, 864, 967
EaeI YGGCCR 2 cut(s) 688, 700
Ecl136II GAGCTC 2 cut(s) 31, 172
Eco130I CCWWGG 2 cut(s) 735, 996
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 3 cut(s) 33, 174, 678
Eco47I GGWCC 1 cut(s) 206
Eco53kI GAGCTC 2 cut(s) 31, 172
Eco57I CTGAAG 1 cut(s) 845
Eco72I CACGTG 1 cut(s) 545
Eco81I CCTNAGG 1 cut(s) 210
EcoICRI GAGCTC 2 cut(s) 31, 172
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 735, 996
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 3 cut(s) 33, 174, 678
ErhI CCWWGG 2 cut(s) 735, 996
FaeI CATG 5 cut(s) 491, 667, 682, 1000, 1020
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 591, 623
FatI CATG 5 cut(s) 487, 663, 678, 996, 1016
FauI CCCGC 1 cut(s) 453
FauNDI CATATG 1 cut(s) 788
Fnu4HI GCNGC 3 cut(s) 220, 250, 442
FokI GGATG 4 cut(s) 344, 637, 1004, 1047
FriOI GRGCYC 3 cut(s) 33, 174, 678
Fsp4HI GCNGC 3 cut(s) 220, 250, 442
FspBI CTAG 4 cut(s) 216, 324, 761, 986
GlaI GCGC 3 cut(s) 469, 471, 551
GluI GCNGC 3 cut(s) 220, 250, 442
GsaI CCCAGC 1 cut(s) 662
HaeIII GGCC 6 cut(s) 5, 85, 657, 690, 702, 960
HapII CCGG 1 cut(s) 1055
HhaI GCGC 3 cut(s) 470, 472, 552
Hin1II CATG 5 cut(s) 491, 667, 682, 1000, 1020
Hin6I GCGC 3 cut(s) 468, 470, 550
HinP1I GCGC 3 cut(s) 468, 470, 550
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 4 cut(s) 236, 526, 628, 820
HpaII CCGG 1 cut(s) 1055
HphI GGTGA 3 cut(s) 280, 695, 751
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 21, 362, 825, 981
Hpy188III TCNNGA 3 cut(s) 46, 55, 509
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 416, 458
HpyCH4III ACNGT 4 cut(s) 182, 188, 390, 910
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 4 cut(s) 222, 344, 419, 903
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 82, 476, 538, 547, 804
HpyF3I CTNAG 3 cut(s) 210, 238, 528
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 5 cut(s) 491, 667, 682, 1000, 1020
HspAI GCGC 3 cut(s) 468, 470, 550
Kzo9I GATC 6 cut(s) 16, 42, 127, 319, 864, 967
LmnI GCTCC 3 cut(s) 73, 646, 1057
Lsp1109I GCAGC 2 cut(s) 206, 236
LweI GCATC 3 cut(s) 508, 568, 982
MaeI CTAG 4 cut(s) 216, 324, 761, 986
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 3 cut(s) 182, 746, 1000
MalI GATC 6 cut(s) 18, 44, 129, 321, 866, 969
MboI GATC 6 cut(s) 16, 42, 127, 319, 864, 967
MboII GAAGA 4 cut(s) 277, 385, 838, 869
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 3 cut(s) 33, 174, 678
MlsI TGGCCA 1 cut(s) 690
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 2 cut(s) 230, 520
MnlI CCTC 4 cut(s) 75, 116, 142, 421
Mox20I TGGCCA 1 cut(s) 690
Mph1103I ATGCAT 1 cut(s) 346
MscI TGGCCA 1 cut(s) 690
MseI TTAA 4 cut(s) 372, 563, 768, 1074
MslI CAYNNNNRTG 2 cut(s) 787, 1065
Msp20I TGGCCA 1 cut(s) 690
MspI CCGG 1 cut(s) 1055
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 2 cut(s) 441, 470
MwoI GCNNNNNNNGC 6 cut(s) 11, 82, 476, 538, 547, 804
NcoI CCATGG 1 cut(s) 996
NdeI CATATG 1 cut(s) 788
NdeII GATC 6 cut(s) 16, 42, 127, 319, 864, 967
NheI GCTAGC 1 cut(s) 215
NlaIII CATG 5 cut(s) 491, 667, 682, 1000, 1020
NlaIV GGNNCC 5 cut(s) 59, 150, 207, 321, 604
NmeAIII GCCGAG 1 cut(s) 936
NmuCI GTSAC 2 cut(s) 182, 746
NsiI ATGCAT 1 cut(s) 346
PalAI GGCGCGCC 1 cut(s) 468
PauI GCGCGC 1 cut(s) 468
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 2 cut(s) 628, 820
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 3 cut(s) 221, 251, 443
PleI GAGTC 2 cut(s) 230, 520
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
PpsI GAGTC 2 cut(s) 230, 520
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 1 cut(s) 206
Psp124BI GAGCTC 2 cut(s) 33, 174
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 6
PspCI CACGTG 1 cut(s) 545
PspFI CCCAGC 1 cut(s) 658
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 5 cut(s) 59, 150, 207, 321, 604
PspPI GGNCC 4 cut(s) 4, 206, 656, 959
PspPPI RGGWCCY 1 cut(s) 206
PsuI RGATCY 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 188
PteI GCGCGC 1 cut(s) 468
RsaI GTAC 4 cut(s) 117, 281, 668, 836
RsaNI GTAC 4 cut(s) 116, 280, 667, 835
RseI CAYNNNNRTG 2 cut(s) 787, 1065
SacI GAGCTC 2 cut(s) 33, 174
SaqAI TTAA 4 cut(s) 372, 563, 768, 1074
SatI GCNGC 3 cut(s) 220, 250, 442
Sau3AI GATC 6 cut(s) 16, 42, 127, 319, 864, 967
Sau96I GGNCC 4 cut(s) 4, 206, 656, 959
SchI GAGTC 2 cut(s) 230, 520
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 3 cut(s) 33, 174, 678
SfaNI GCATC 3 cut(s) 508, 568, 982
SgsI GGCGCGCC 1 cut(s) 468
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 787, 1065
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 3 cut(s) 441, 460, 477
SspMI CTAG 4 cut(s) 216, 324, 761, 986
SstI GAGCTC 2 cut(s) 33, 174
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 735, 996
TaaI ACNGT 4 cut(s) 182, 188, 390, 910
TaiI ACGT 1 cut(s) 547
TaqI TCGA 3 cut(s) 33, 162, 294
TatI WGTACW 3 cut(s) 279, 666, 834
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 2 cut(s) 628, 820
Tru1I TTAA 4 cut(s) 372, 563, 768, 1074
Tru9I TTAA 4 cut(s) 372, 563, 768, 1074
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 2 cut(s) 182, 746
TseI GCWGC 2 cut(s) 219, 249
Tsp45I GTSAC 2 cut(s) 182, 746
TspDTI ATGAA 1 cut(s) 641
TspRI CASTG 1 cut(s) 393
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 4 cut(s) 216, 324, 761, 986
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.