Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014935

Physical Location & Seq

Genomic Coordinates Forward (+)

24912408 .. 24914486

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1154400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTCCCTAACGGCTTCAACTACGAGCTCTACAACCGCAATGATGTGAACAAGGTCCTAGGTCCCAAGGCCAGCTGCATTTCTTTCAAGGACTCCGCTTGTCGCTGCTTCGGTTTCTTGGTTTCAAGAAAAAGTACATCTTCACCATCGATGACGATTGCTTTGTATGTGGATGCTGTGATGACAATCCCCAGAGGCACCCTTTTTCCAATGTGTGGGATGAACCTGGCGTTCAATAGGGAGCTGATAGGTCCAGCAATGTATTTTGGGCTCATGGGTGATGGCCAACCCCTTGGTAGATATGATGACATGTGGGCTGGCTGGTGTGCCAAGGTGATATGTGACCATTTGGGTCTAGGAGTTAAGACAGGACTGCCATACATATGGCATAGCAAGGCAAGCAACCCATTTGTGAACTTGAAGAAAGAGTACAAAGGGATATACTGGCAAGAAGATATGATTCTATTTTTCCAACAAATTGTGCTCCCAAAAGAGTGCAAAACTGTCCAAGATTGCTACATTGAGCTTGCCAACAAGGTGAAGGAAGAGCTTGGTCCTCTTGATCCCTACTTTGAGCAGCTTGGGGATGCCATGGTTACTTGGACTGAAGCCTGGGATGAGCTCAACCCACCGCCTGAAACAGCGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009225 GO:0009832 GO:0009987 GO:0012505 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

217

Amino Acids

24.41

Weight (kDa)

5.26

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGP	PF03214	2 - 44	1.2e-14	Reversibly glycosylated polypeptide
RGP	PF03214	52 - 209	6.8e-73	Reversibly glycosylated polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50750
fragaria_vesca	FvH4_5g08630 FvH4_5g08630
malus_domestica	MD14G1154400.v1.1
prunus_persica	Prupe.5G148600_v2.0.a1
pyrus_communis	pycom06g12960
rosa_chinensis	RchiOBHm_Chr7g0189771
rosa_laevigata	RLG00000004592
rosa_multiflora	Rmu_sc0014337.1_g000001 Rmu_sc0029387.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265180
rosa_rugosa	Rorug06G0499800 Rorug06G0499800
rosa_samantha	Rh7AG104800 Rh7CG109400
rosa_wichuraiana	Rw7G009070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	215
AciI	CCGC	3 cut(s)	37, 96, 632
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	2 cut(s)	136, 431
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	5 cut(s)	19, 88, 126, 235, 421
AjnI	CCWGG	2 cut(s)	225, 611
AluBI	AGCT	7 cut(s)	28, 75, 244, 526, 550, 580, 622
AluI	AGCT	7 cut(s)	28, 75, 244, 526, 550, 580, 622
Alw21I	GWGCWC	3 cut(s)	30, 486, 624
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	2 cut(s)	69, 283
ApeKI	GCWGC	3 cut(s)	75, 105, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspA2I	CCTAGG	1 cut(s)	58
AspS9I	GGNCC	5 cut(s)	4, 55, 62, 251, 554
AsuHPI	GGTGA	4 cut(s)	135, 290, 346, 550
AvaII	GGWCC	5 cut(s)	4, 55, 62, 251, 554
AvrII	CCTAGG	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	3 cut(s)	30, 273, 624
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
Bbv12I	GWGCWC	3 cut(s)	30, 486, 624
BbvI	GCAGC	3 cut(s)	62, 92, 589
BccI	CCATC	2 cut(s)	154, 275
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	227, 613
BfaI	CTAG	2 cut(s)	59, 356
BisI	GCNGC	3 cut(s)	76, 106, 578
BlnI	CCTAGG	1 cut(s)	58
BlsI	GCNGC	3 cut(s)	77, 107, 579
Bme1390I	CCNGG	2 cut(s)	227, 613
Bme18I	GGWCC	5 cut(s)	4, 55, 62, 251, 554
BmgT120I	GGNCC	5 cut(s)	4, 55, 62, 251, 554
BmiI	GGNNCC	3 cut(s)	6, 64, 199
BmrFI	CCNGG	2 cut(s)	227, 613
BmsI	GCATC	2 cut(s)	163, 577
Bsa29I	ATCGAT	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	6 cut(s)	58, 66, 292, 330, 591, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	2 cut(s)	46, 264
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	227, 613
BseCI	ATCGAT	1 cut(s)	149
BseDI	CCNNGG	6 cut(s)	58, 66, 292, 330, 591, 612
BseGI	GGATG	4 cut(s)	178, 225, 592, 622
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	2 cut(s)	46, 264
BseNI	ACTGG	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	62, 92, 589
BshFI	GGCC	2 cut(s)	71, 285
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	149
BsiHKAI	GWGCWC	3 cut(s)	30, 486, 624
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	71, 285
Bsp1286I	GDGCHC	4 cut(s)	30, 273, 486, 624
Bsp143I	GATC	1 cut(s)	562
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	3 cut(s)	37, 96, 632
BspANI	GGCC	2 cut(s)	71, 285
BspDI	ATCGAT	1 cut(s)	149
BspLI	GGNNCC	3 cut(s)	6, 64, 199
BspPI	GGATC	1 cut(s)	557
BspQI	GCTCTTC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	46, 264
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	6 cut(s)	58, 66, 292, 330, 591, 612
BssMI	GATC	1 cut(s)	562
BssT1I	CCWWGG	5 cut(s)	58, 66, 292, 330, 591
Bst2UI	CCWGG	2 cut(s)	227, 613
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	540
BstC8I	GCNNGC	4 cut(s)	73, 319, 400, 528
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	4 cut(s)	178, 225, 592, 622
BstKTI	GATC	1 cut(s)	565
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNI	CCWGG	2 cut(s)	227, 613
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	225, 611
BstV1I	GCAGC	3 cut(s)	62, 92, 589
BstXI	CCANNNNNNTGG	2 cut(s)	293, 384
Bsu15I	ATCGAT	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	71, 285
BsuTUI	ATCGAT	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	4 cut(s)	178, 225, 592, 622
Cac8I	GCNNGC	4 cut(s)	73, 319, 400, 528
Cfr13I	GGNCC	5 cut(s)	4, 55, 62, 251, 554
ClaI	ATCGAT	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	135, 430
CviAII	CATG	3 cut(s)	274, 310, 592
CviQI	GTAC	2 cut(s)	135, 430
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Ecl136II	GAGCTC	2 cut(s)	28, 622
Eco130I	CCWWGG	5 cut(s)	58, 66, 292, 330, 591
Eco24I	GRGCYC	3 cut(s)	30, 273, 624
Eco47I	GGWCC	5 cut(s)	4, 55, 62, 251, 554
Eco53kI	GAGCTC	2 cut(s)	28, 622
Eco57I	CTGAAG	1 cut(s)	627
EcoICRI	GAGCTC	2 cut(s)	28, 622
EcoO109I	RGGNCCY	2 cut(s)	55, 62
EcoRII	CCWGG	2 cut(s)	225, 611
EcoT14I	CCWWGG	5 cut(s)	58, 66, 292, 330, 591
EcoT38I	GRGCYC	3 cut(s)	30, 273, 624
ErhI	CCWWGG	5 cut(s)	58, 66, 292, 330, 591
FaeI	CATG	3 cut(s)	277, 313, 595
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	3 cut(s)	273, 309, 591
FauNDI	CATATG	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	76, 106, 578
FokI	GGATG	4 cut(s)	185, 232, 599, 629
FriOI	GRGCYC	3 cut(s)	30, 273, 624
Fsp4HI	GCNGC	3 cut(s)	76, 106, 578
FspBI	CTAG	2 cut(s)	59, 356
GluI	GCNGC	3 cut(s)	76, 106, 578
HaeIII	GGCC	2 cut(s)	71, 285
Hin1II	CATG	3 cut(s)	277, 313, 595
HinfI	GANTC	2 cut(s)	92, 460
HphI	GGTGA	4 cut(s)	135, 290, 346, 550
Hpy166II	GTNNAC	2 cut(s)	49, 415
Hpy188III	TCNNGA	2 cut(s)	126, 560
Hpy8I	GTNNAC	2 cut(s)	49, 415
HpyAV	CCTTC	1 cut(s)	535
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	2 cut(s)	78, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	277, 313, 595
Kzo9I	GATC	1 cut(s)	562
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	2 cut(s)	241, 489
Lsp1109I	GCAGC	3 cut(s)	62, 92, 589
LweI	GCATC	2 cut(s)	163, 577
MaeI	CTAG	2 cut(s)	59, 356
MaeIII	GTNAC	2 cut(s)	341, 595
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	4 cut(s)	132, 433, 464, 557
MhlI	GDGCHC	4 cut(s)	30, 273, 486, 624
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	2 cut(s)	188, 567
Mox20I	TGGCCA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	227, 613
MvaI	CCWGG	2 cut(s)	227, 613
MwoI	GCNNNNNNNGC	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	591
NdeI	CATATG	1 cut(s)	383
NdeII	GATC	1 cut(s)	562
NlaIII	CATG	3 cut(s)	277, 313, 595
NlaIV	GGNNCC	3 cut(s)	6, 64, 199
NmuCI	GTSAC	1 cut(s)	341
NspI	RCATGY	1 cut(s)	313
PciI	ACATGT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	460
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	77, 107, 579
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PpuMI	RGGWCCY	2 cut(s)	55, 62
PscI	ACATGT	1 cut(s)	309
Psp124BI	GAGCTC	2 cut(s)	30, 624
Psp5II	RGGWCCY	2 cut(s)	55, 62
Psp6I	CCWGG	2 cut(s)	225, 611
PspGI	CCWGG	2 cut(s)	225, 611
PspN4I	GGNNCC	3 cut(s)	6, 64, 199
PspPI	GGNCC	5 cut(s)	4, 55, 62, 251, 554
PspPPI	RGGWCCY	2 cut(s)	55, 62
PvuII	CAGCTG	1 cut(s)	75
RsaI	GTAC	2 cut(s)	136, 431
RsaNI	GTAC	2 cut(s)	135, 430
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	2 cut(s)	30, 624
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	3 cut(s)	76, 106, 578
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	5 cut(s)	4, 55, 62, 251, 554
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	227, 613
SduI	GDGCHC	4 cut(s)	30, 273, 486, 624
SfaNI	GCATC	2 cut(s)	163, 577
SinI	GGWCC	5 cut(s)	4, 55, 62, 251, 554
SmiMI	CAYNNNNRTG	1 cut(s)	382
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	3 cut(s)	37, 96, 632
SspMI	CTAG	2 cut(s)	59, 356
SstI	GAGCTC	2 cut(s)	30, 624
StyD4I	CCNGG	2 cut(s)	225, 611
StyI	CCWWGG	5 cut(s)	58, 66, 292, 330, 591
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	477
TatI	WGTACW	2 cut(s)	134, 429
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	3 cut(s)	75, 105, 577
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	5 cut(s)	4, 55, 62, 251, 554
XceI	RCATGY	1 cut(s)	313
XmaJI	CCTAGG	1 cut(s)	58
XspI	CTAG	2 cut(s)	59, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.