Prupe.5G148600_v2.0.a1

UDP-arabinopyranose mutase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014935
Physical Location & Seq
Forward (+)
13574432 .. 13576468
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G148600.1

Sequence Viewer

Length: 1086 bp
ATGGCTCAATTGCGTGATCTGAAAGACGAGCTTGACATTGTGATCCCAACAATCAGGAACCTTGATTTCTTGGAGATGTGGAGGCCTTTCTTTCAGCCCTACCACCTCATCATTGTCCAAGATGGTGACCCCTCCAACACCATTGGGGTCCCTGAGGGCTTTGACTACGAGCTCTACAACCGCAACGATGTGAACAGGATCCTAGGTCCCAAGGCCAGCTGCATACCTTTCAAAGACTCTGCATGCCGCTGCTTCGGTTTCTTGGTCTCCAAGAAGAAGTACATCTTCACCATCGATGACGATTGCTTTGTGGCGAAGGAGCCTAATGGGAAAGAGATAAATGCTTTGGAACAACACATCAGGAACCTGTTGACACCATCAACTCCATTGTTCTTCAACACACTATATGACCCGTTTGCGAACGGGTCGGACTTTGTTCGCGGGTACCCATTTAGCTTAAGAGAAGGTCTGCCCACTGCTATTTCTCACGGGCTTTGGCTCAATATCCCTGACTATGATGCCCCAACTCAGCTAGTCAAGCCTCGTGAGCGCAACACCAGGTATGTGGATGCTGTGATGACAATCCCCAAAGGAACCCTTTTCCCAATGTGTGGGATGAACTTAGCTTTTGACAGGGAGCTGATAGGCCCAGCCATGTATTTTGGGCTCATGGGTGATGGCCAACCCATAGGCAGATACGATGATATGTGGGCTGGCTGGTGTGCCAAGGTGATATGTGACCATTTGTTGCTAGGGGTGAAGACAGGGCTGCCATACATATGGCACAGCAAGGCAAGTAACCCATTTGTGAATTTGAAGAAAGAGTACAAGGGCATATACTGGCAGGAAGATATCATTCCATTTTTCCAATCAATCGCGCTCCGAGAAGAGTGCACAAGTGTCCAAGATTGCTACATTGAGCTTGCCAACAAGGTCAAGGAAAGGCTTGGCCCTATTGATCCTTACTTTGAGAAGCTTGGGGATGCCATGGTTACTTGGATTGAAGCCTGGAATGAGCTCAACCCACCACCACCACCAGCACAAACTGCAACTGTGGCTCATCCAAATGTTGCCATGAAAAACTAA

Protein Analysis

362

Amino Acids

41.19

Weight (kDa)

5.27

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014935)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50750
fragaria_vesca FvH4_5g08630 FvH4_5g08630
malus_domestica MD14G1154400.v1.1
prunus_persica Prupe.5G148600_v2.0.a1
pyrus_communis pycom06g12960
rosa_chinensis RchiOBHm_Chr7g0189771
rosa_laevigata RLG00000004592
rosa_multiflora Rmu_sc0014337.1_g000001 Rmu_sc0029387.1_g000001
rosa_roxburghii Rroxscaffold_3G00265180
rosa_rugosa Rorug06G0499800 Rorug06G0499800
rosa_samantha Rh7AG104800 Rh7CG109400
rosa_wichuraiana Rw7G009070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 611
AccII CGCG 2 cut(s) 441, 878
AciI CCGC 3 cut(s) 181, 247, 441
AclWI GGATC 4 cut(s) 37, 193, 206, 953
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 1 cut(s) 811
AfaI GTAC 3 cut(s) 281, 446, 827
AfiI CCNNNNNNNGG 1 cut(s) 611
AflII CTTAAG 1 cut(s) 457
AgsI TTSAA 4 cut(s) 232, 397, 817, 1004
AjnI CCWGG 2 cut(s) 557, 1007
Alw21I GWGCWC 3 cut(s) 174, 896, 1020
Alw26I GTCTC 1 cut(s) 271
Alw44I GTGCAC 1 cut(s) 892
AlwI GGATC 4 cut(s) 37, 193, 206, 953
AoxI GGCC 5 cut(s) 83, 213, 646, 679, 949
ApaLI GTGCAC 1 cut(s) 892
ApeKI GCWGC 3 cut(s) 219, 249, 769
ApoI RAATTY 1 cut(s) 811
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
Asp718I GGTACC 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 202
AspLEI GCGC 2 cut(s) 552, 880
AspS9I GGNCC 4 cut(s) 148, 206, 647, 950
AsuHPI GGTGA 5 cut(s) 137, 280, 686, 742, 769
AvaII GGWCC 2 cut(s) 148, 206
AvrII CCTAGG 1 cut(s) 202
AxyI CCTNAGG 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 896
BalI TGGCCA 1 cut(s) 681
BamHI GGATCC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 444
BanII GRGCYC 3 cut(s) 174, 669, 1020
BarI GAAGNNNNNNTAC 2 cut(s) 809, 841
BauI CACGAG 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 767
Bbv12I GWGCWC 3 cut(s) 174, 896, 1020
BbvI GCAGC 3 cut(s) 206, 236, 756
BccI CCATC 4 cut(s) 116, 299, 385, 671
BcgI CGANNNNNNTGC 2 cut(s) 873, 907
BciT130I CCWGG 2 cut(s) 559, 1009
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 3 cut(s) 203, 533, 752
BfrI CTTAAG 1 cut(s) 457
BisI GCNGC 4 cut(s) 220, 247, 250, 770
BlnI CCTAGG 1 cut(s) 202
BlsI GCNGC 4 cut(s) 221, 248, 251, 771
Bme1390I CCNGG 2 cut(s) 559, 1009
Bme18I GGWCC 2 cut(s) 148, 206
BmgT120I GGNCC 4 cut(s) 148, 206, 647, 950
BmiI GGNNCC 9 cut(s) 59, 149, 150, 200, 208, 321, 365, 446, 595
BmrFI CCNGG 2 cut(s) 559, 1009
BmsI GCATC 3 cut(s) 508, 559, 973
BpiI GAAGAC 1 cut(s) 767
Bsa29I ATCGAT 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 4 cut(s) 202, 210, 726, 987
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 845
Bse21I CCTNAGG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 2 cut(s) 559, 1009
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 4 cut(s) 202, 210, 726, 987
BseGI GGATG 4 cut(s) 574, 621, 988, 1060
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMII CTCAG 2 cut(s) 144, 542
BseNI ACTGG 1 cut(s) 845
BseSI GKGCMC 1 cut(s) 896
BseXI GCAGC 3 cut(s) 206, 236, 756
BseYI CCCAGC 1 cut(s) 649
Bsh1236I CGCG 2 cut(s) 441, 878
BshFI GGCC 5 cut(s) 85, 215, 648, 681, 951
BshNI GGYRCC 1 cut(s) 444
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 3 cut(s) 174, 896, 1020
BslFI GGGAC 2 cut(s) 134, 192
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 2 cut(s) 134, 192
BsnI GGCC 5 cut(s) 85, 215, 648, 681, 951
Bso31I GGTCTC 1 cut(s) 271
Bsp1286I GDGCHC 4 cut(s) 174, 669, 896, 1020
Bsp143I GATC 4 cut(s) 16, 42, 198, 958
Bsp19I CCATGG 1 cut(s) 987
BspACI CCGC 3 cut(s) 181, 247, 441
BspANI GGCC 5 cut(s) 85, 215, 648, 681, 951
BspCNI CTCAG 2 cut(s) 145, 541
BspDI ATCGAT 1 cut(s) 294
BspFNI CGCG 2 cut(s) 441, 878
BspLI GGNNCC 9 cut(s) 59, 149, 150, 200, 208, 321, 365, 446, 595
BspPI GGATC 4 cut(s) 37, 193, 206, 953
BspT107I GGYRCC 1 cut(s) 444
BspTI CTTAAG 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 845
BssECI CCNNGG 4 cut(s) 202, 210, 726, 987
BssMI GATC 4 cut(s) 16, 42, 198, 958
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 4 cut(s) 202, 210, 726, 987
Bst2BI CACGAG 1 cut(s) 543
Bst2UI CCWGG 2 cut(s) 559, 1009
Bst4CI ACNGT 1 cut(s) 1054
Bst6I CTCTTC 1 cut(s) 882
BstAFI CTTAAG 1 cut(s) 457
BstAPI GCANNNNNTGC 1 cut(s) 1046
BstC8I GCNNGC 4 cut(s) 217, 244, 715, 924
BstDEI CTNAG 3 cut(s) 153, 528, 622
BstDSI CCRYGG 1 cut(s) 987
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 4 cut(s) 574, 621, 988, 1060
BstFNI CGCG 2 cut(s) 441, 878
BstHHI GCGC 2 cut(s) 552, 880
BstKTI GATC 4 cut(s) 19, 45, 201, 961
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 4 cut(s) 16, 42, 198, 958
BstMWI GCNNNNNNNGC 4 cut(s) 538, 547, 1046, 1055
BstNI CCWGG 2 cut(s) 559, 1009
BstNSI RCATGY 1 cut(s) 246
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 557, 1007
BstSLI GKGCMC 1 cut(s) 896
BstUI CGCG 2 cut(s) 441, 878
BstV1I GCAGC 3 cut(s) 206, 236, 756
BstV2I GAAGAC 1 cut(s) 767
BstX2I RGATCY 1 cut(s) 198
BstXI CCANNNNNNTGG 2 cut(s) 565, 780
BstYI RGATCY 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 294
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 5 cut(s) 85, 215, 648, 681, 951
BsuTUI ATCGAT 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 4 cut(s) 574, 621, 988, 1060
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 4 cut(s) 217, 244, 715, 924
CfoI GCGC 2 cut(s) 552, 880
Cfr13I GGNCC 4 cut(s) 148, 206, 647, 950
ClaI ATCGAT 1 cut(s) 294
CsiI ACCWGGT 1 cut(s) 557
Csp6I GTAC 3 cut(s) 280, 445, 826
CviAII CATG 5 cut(s) 243, 655, 670, 988, 1075
CviQI GTAC 3 cut(s) 280, 445, 826
DdeI CTNAG 3 cut(s) 153, 528, 622
DpnI GATC 4 cut(s) 18, 44, 200, 960
DpnII GATC 4 cut(s) 16, 42, 198, 958
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Ecl136II GAGCTC 2 cut(s) 172, 1018
Eco130I CCWWGG 4 cut(s) 202, 210, 726, 987
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 3 cut(s) 174, 669, 1020
Eco31I GGTCTC 1 cut(s) 271
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 2 cut(s) 148, 206
Eco53kI GAGCTC 2 cut(s) 172, 1018
Eco81I CCTNAGG 1 cut(s) 153
Eco91I GGTNACC 1 cut(s) 125
EcoICRI GAGCTC 2 cut(s) 172, 1018
EcoO109I RGGNCCY 2 cut(s) 148, 206
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 557, 1007
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 4 cut(s) 202, 210, 726, 987
EcoT38I GRGCYC 3 cut(s) 174, 669, 1020
ErhI CCWWGG 4 cut(s) 202, 210, 726, 987
FaeI CATG 5 cut(s) 246, 658, 673, 991, 1078
FalI AAGNNNNNCTT 6 cut(s) 15, 47, 269, 301, 582, 614
FaqI GGGAC 2 cut(s) 134, 192
FatI CATG 5 cut(s) 242, 654, 669, 987, 1074
FauI CCCGC 1 cut(s) 434
FauNDI CATATG 1 cut(s) 779
Fnu4HI GCNGC 4 cut(s) 220, 247, 250, 770
FokI GGATG 4 cut(s) 581, 628, 995, 1047
FriOI GRGCYC 3 cut(s) 174, 669, 1020
Fsp4HI GCNGC 4 cut(s) 220, 247, 250, 770
FspBI CTAG 3 cut(s) 203, 533, 752
GlaI GCGC 2 cut(s) 551, 879
GluI GCNGC 4 cut(s) 220, 247, 250, 770
GsaI CCCAGC 1 cut(s) 653
HaeIII GGCC 5 cut(s) 85, 215, 648, 681, 951
HhaI GCGC 2 cut(s) 552, 880
Hin1II CATG 5 cut(s) 246, 658, 673, 991, 1078
Hin6I GCGC 2 cut(s) 550, 878
HinP1I GCGC 2 cut(s) 550, 878
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 1 cut(s) 236
HphI GGTGA 5 cut(s) 137, 280, 686, 742, 769
Hpy166II GTNNAC 3 cut(s) 193, 372, 894
Hpy188I TCNGA 3 cut(s) 21, 430, 884
Hpy188III TCNNGA 3 cut(s) 55, 361, 545
Hpy8I GTNNAC 3 cut(s) 193, 372, 894
HpyAV CCTTC 2 cut(s) 310, 458
HpyCH4III ACNGT 1 cut(s) 1054
HpyCH4V TGCA 4 cut(s) 222, 242, 894, 1049
HpyF10VI GCNNNNNNNGC 4 cut(s) 538, 547, 1046, 1055
HpyF3I CTNAG 3 cut(s) 153, 528, 622
Hsp92II CATG 5 cut(s) 246, 658, 673, 991, 1078
HspAI GCGC 2 cut(s) 550, 878
KflI GGGWCCC 1 cut(s) 148
KpnI GGTACC 1 cut(s) 448
Kzo9I GATC 4 cut(s) 16, 42, 198, 958
LmnI GCTCC 3 cut(s) 319, 637, 885
Lsp1109I GCAGC 3 cut(s) 206, 236, 756
LweI GCATC 3 cut(s) 508, 559, 973
MabI ACCWGGT 1 cut(s) 557
MaeI CTAG 3 cut(s) 203, 533, 752
MaeIII GTNAC 4 cut(s) 125, 737, 797, 991
MalI GATC 4 cut(s) 18, 44, 200, 960
MboI GATC 4 cut(s) 16, 42, 198, 958
MboII GAAGA 7 cut(s) 277, 286, 385, 772, 829, 860, 899
MfeI CAATTG 1 cut(s) 8
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 4 cut(s) 174, 669, 896, 1020
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 2 cut(s) 8, 811
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 2 cut(s) 159, 408
MnlI CCTC 5 cut(s) 75, 116, 142, 148, 552
Mox20I TGGCCA 1 cut(s) 681
MscI TGGCCA 1 cut(s) 681
MseI TTAA 1 cut(s) 458
MslI CAYNNNNRTG 2 cut(s) 778, 1065
Msp20I TGGCCA 1 cut(s) 681
MspA1I CMGCKG 2 cut(s) 219, 249
MspCI CTTAAG 1 cut(s) 457
MspR9I CCNGG 2 cut(s) 559, 1009
MunI CAATTG 1 cut(s) 8
MvaI CCWGG 2 cut(s) 559, 1009
MvnI CGCG 2 cut(s) 441, 878
MwoI GCNNNNNNNGC 4 cut(s) 538, 547, 1046, 1055
NcoI CCATGG 1 cut(s) 987
NdeI CATATG 1 cut(s) 779
NdeII GATC 4 cut(s) 16, 42, 198, 958
NlaIII CATG 5 cut(s) 246, 658, 673, 991, 1078
NlaIV GGNNCC 9 cut(s) 59, 149, 150, 200, 208, 321, 365, 446, 595
NmuCI GTSAC 2 cut(s) 125, 737
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PceI AGGCCT 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 611
PkrI GCNGC 4 cut(s) 221, 248, 251, 771
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PpuMI RGGWCCY 2 cut(s) 148, 206
Psp124BI GAGCTC 2 cut(s) 174, 1020
Psp5II RGGWCCY 2 cut(s) 148, 206
Psp6I CCWGG 2 cut(s) 557, 1007
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 2 cut(s) 557, 1007
PspN4I GGNNCC 9 cut(s) 59, 149, 150, 200, 208, 321, 365, 446, 595
PspPI GGNCC 4 cut(s) 148, 206, 647, 950
PspPPI RGGWCCY 2 cut(s) 148, 206
PsuI RGATCY 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 219
RsaI GTAC 3 cut(s) 281, 446, 827
RsaNI GTAC 3 cut(s) 280, 445, 826
RseI CAYNNNNRTG 2 cut(s) 778, 1065
SacI GAGCTC 2 cut(s) 174, 1020
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 4 cut(s) 220, 247, 250, 770
Sau3AI GATC 4 cut(s) 16, 42, 198, 958
Sau96I GGNCC 4 cut(s) 148, 206, 647, 950
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 559, 1009
SduI GDGCHC 4 cut(s) 174, 669, 896, 1020
SexAI ACCWGGT 1 cut(s) 557
SfaNI GCATC 3 cut(s) 508, 559, 973
SinI GGWCC 2 cut(s) 148, 206
SmiMI CAYNNNNRTG 2 cut(s) 778, 1065
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SphI GCATGC 1 cut(s) 246
Sse9I AATT 2 cut(s) 8, 811
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 3 cut(s) 181, 247, 441
SspMI CTAG 3 cut(s) 203, 533, 752
SstI GAGCTC 2 cut(s) 174, 1020
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 557, 1007
StyI CCWWGG 4 cut(s) 202, 210, 726, 987
TaaI ACNGT 1 cut(s) 1054
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 8, 811
TatI WGTACW 2 cut(s) 279, 825
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 2 cut(s) 125, 737
TseI GCWGC 3 cut(s) 219, 249, 769
Tsp45I GTSAC 2 cut(s) 125, 737
TspDTI ATGAA 1 cut(s) 632
TspRI CASTG 1 cut(s) 481
Van91I CCANNNNNTGG 1 cut(s) 611
Vha464I CTTAAG 1 cut(s) 457
VneI GTGCAC 1 cut(s) 892
VpaK11BI GGWCC 2 cut(s) 148, 206
XapI RAATTY 1 cut(s) 811
XceI RCATGY 1 cut(s) 246
XmaJI CCTAGG 1 cut(s) 202
XspI CTAG 3 cut(s) 203, 533, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.