Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012051

Physical Location & Seq

Genomic Coordinates Forward (+)

20722069 .. 20724481

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTTAACATTTCTTACGCCAAACGAAACGCTAAATATTTATTTAAATTGCTAGCCTGGTGTATGATGATCGAGGAAGCTGGACCTAACATCGGTAACAAGCAAAAAGTAGTTCTCCAACTTAGCAAAATGCTAATAATGTATATCATTCTCCATATAAACGCTGCGTTTTGGACATGGAGGGGATACTTAAAACGCTGCGTTTTACACTTTGTTTTCCCGCGTATATTTCTCCCTTTATTATCGGATAGCCCAACAATCACACAGGCGAAGAAACCTAGCTATTGCTTCGCCATGGACGTCGGAGGAGAAGACATAAGCGATCTCCAGGTAGACCAAATCGTTGAAGAATATTCTATGGACGATCTCATTAGAGACCGATTCAGACTCTCCGCGATCTCTATCGCCGAAGCCGAGGCGAAGAAAAATGGAATGGAAATAGGTGGACCTGTTGTGGCATGTGTGGCAGATTTAGCCTTCAAATATGCAGAAAACGTTGCAAAGGATCTTGAACTATTCGCTCATCATGCTGGACGCAAAGTTGTGAACATGGACGATGTTGTTCTCTCCGCGCATAGAAACGATAACTTAGCAGCATCTTTGAGGTCACTATGCAATGAGCTAAAGGCAAAGGAGCCACAATCTGAGAGGAAACGCAAGAAAGGATCAGCCAAGAAAGAAGACAAAGCCAGTAGTAGCAATGCCGTTCGCATCACGACCGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

242

Amino Acids

27.29

Weight (kDa)

8.98

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-S	PF15630	133 - 197	7.1e-18	CENP-S protein
CENP-T_C	PF15511	135 - 207	8.5e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50930
fragaria_vesca	FvH4_5g09450 FvH4_5g09450 FvH4_5g09450
malus_domestica	MD06G1131300.v1.1 MD14G1147700.v1.1
prunus_persica	Prupe.5G142300_v2.0.a1
pyrus_communis	pycom06g12270 pycom14g12240
rosa_chinensis	RchiOBHm_Chr7g0188741
rosa_laevigata	RLG00000004665
rosa_multiflora	Rmu_sc0003642.1_g000010 Rmu_sc0003854.1_g000008 Rmu_sc0035182.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266080
rosa_rugosa	Rorug06G0493600
rosa_samantha	Rh7BG099600 Rh7CG101300
rosa_wichuraiana	Rw7G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	3 cut(s)	223, 395, 572
AciI	CCGC	3 cut(s)	221, 393, 570
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	2 cut(s)	513, 673
AcyI	GRCGYC	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	347, 481, 512
AjnI	CCWGG	2 cut(s)	56, 327
AluBI	AGCT	3 cut(s)	80, 282, 622
AluI	AGCT	3 cut(s)	80, 282, 622
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	513, 673
ApeKI	GCWGC	3 cut(s)	164, 198, 593
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	2 cut(s)	83, 446
AsuNHI	GCTAGC	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	83, 446
BbsI	GAAGAC	2 cut(s)	318, 687
BbvI	GCAGC	3 cut(s)	151, 185, 605
BceAI	ACGGC	1 cut(s)	689
BciT130I	CCWGG	2 cut(s)	58, 329
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	53, 279
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	3 cut(s)	165, 199, 594
BlsI	GCNGC	3 cut(s)	166, 200, 595
Bme1390I	CCNGG	2 cut(s)	58, 329
Bme18I	GGWCC	2 cut(s)	83, 446
BmgT120I	GGNCC	2 cut(s)	83, 446
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	2 cut(s)	58, 329
BmsI	GCATC	2 cut(s)	605, 720
BmtI	GCTAGC	1 cut(s)	56
BpiI	GAAGAC	2 cut(s)	318, 687
BpmI	CTGGAG	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	294, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	690
Bse3DI	GCAATG	2 cut(s)	622, 706
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	58, 329
BseDI	CCNNGG	2 cut(s)	294, 414
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	2 cut(s)	622, 706
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	1 cut(s)	690
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	151, 185, 605
Bsh1236I	CGCG	3 cut(s)	223, 395, 572
Bsh1285I	CGRYCG	1 cut(s)	720
BsiEI	CGRYCG	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	369
Bsp143I	GATC	7 cut(s)	69, 322, 364, 396, 505, 665, 721
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	3 cut(s)	221, 393, 570
BspCNI	CTCAG	1 cut(s)	637
BspFNI	CGCG	3 cut(s)	223, 395, 572
BspLI	GGNNCC	1 cut(s)	636
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	513, 673
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	622, 706
BsrI	ACTGG	1 cut(s)	690
BssECI	CCNNGG	2 cut(s)	294, 414
BssMI	GATC	7 cut(s)	69, 322, 364, 396, 505, 665, 721
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	58, 329
BstACI	GRCGYC	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	122, 589, 645
BstDSI	CCRYGG	1 cut(s)	294
BstFNI	CGCG	3 cut(s)	223, 395, 572
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	7 cut(s)	72, 325, 367, 399, 508, 668, 724
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	7 cut(s)	69, 322, 364, 396, 505, 665, 721
BstMCI	CGRYCG	1 cut(s)	720
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 473, 527
BstNI	CCWGG	2 cut(s)	58, 329
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	2 cut(s)	56, 327
BstUI	CGCG	3 cut(s)	223, 395, 572
BstV1I	GCAGC	3 cut(s)	151, 185, 605
BstV2I	GAAGAC	2 cut(s)	318, 687
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	83, 446
CseI	GACGC	1 cut(s)	543
CviAII	CATG	5 cut(s)	177, 295, 459, 527, 550
DdeI	CTNAG	3 cut(s)	122, 589, 645
DpnI	GATC	7 cut(s)	71, 324, 366, 398, 507, 667, 723
DpnII	GATC	7 cut(s)	69, 322, 364, 396, 505, 665, 721
DraI	TTTAAA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	83, 446
EcoRII	CCWGG	2 cut(s)	56, 327
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	5 cut(s)	180, 298, 462, 530, 553
FatI	CATG	5 cut(s)	176, 294, 458, 526, 549
FauI	CCCGC	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	165, 199, 594
Fsp4HI	GCNGC	3 cut(s)	165, 199, 594
FspBI	CTAG	2 cut(s)	53, 279
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	3 cut(s)	165, 199, 594
GsuI	CTGGAG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	1 cut(s)	574
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	180, 298, 462, 530, 553
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	2 cut(s)	381, 387
Hpy166II	GTNNAC	3 cut(s)	334, 446, 547
Hpy188I	TCNGA	4 cut(s)	247, 305, 386, 646
Hpy188III	TCNNGA	2 cut(s)	509, 715
Hpy8I	GTNNAC	3 cut(s)	334, 446, 547
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	487
HpyCH4IV	ACGT	2 cut(s)	300, 495
HpyCH4V	TGCA	3 cut(s)	488, 500, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 473, 527
HpyF3I	CTNAG	3 cut(s)	122, 589, 645
HpySE526I	ACGT	2 cut(s)	300, 495
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	5 cut(s)	180, 298, 462, 530, 553
HspAI	GCGC	1 cut(s)	572
Kzo9I	GATC	7 cut(s)	69, 322, 364, 396, 505, 665, 721
LmnI	GCTCC	1 cut(s)	634
LpnPI	CCDG	9 cut(s)	43, 66, 70, 251, 314, 341, 462, 516, 703
Lsp1109I	GCAGC	3 cut(s)	151, 185, 605
LweI	GCATC	2 cut(s)	605, 720
MaeI	CTAG	2 cut(s)	53, 279
MaeII	ACGT	2 cut(s)	300, 495
MaeIII	GTNAC	2 cut(s)	95, 606
MalI	GATC	7 cut(s)	71, 324, 366, 398, 507, 667, 723
MboI	GATC	7 cut(s)	69, 322, 364, 396, 505, 665, 721
MboII	GAAGA	5 cut(s)	283, 323, 359, 433, 692
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	2 cut(s)	142, 283
MnlI	CCTC	6 cut(s)	67, 174, 299, 409, 597, 642
MseI	TTAA	3 cut(s)	6, 45, 191
MspR9I	CCNGG	2 cut(s)	58, 329
MvaI	CCWGG	2 cut(s)	58, 329
MvnI	CGCG	3 cut(s)	223, 395, 572
MwoI	GCNNNNNNNGC	3 cut(s)	464, 473, 527
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	7 cut(s)	69, 322, 364, 396, 505, 665, 721
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	5 cut(s)	180, 298, 462, 530, 553
NlaIV	GGNNCC	1 cut(s)	636
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	606
NspI	RCATGY	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 411
PfeI	GAWTC	1 cut(s)	381
PkrI	GCNGC	3 cut(s)	166, 200, 595
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	56, 327
PspGI	CCWGG	2 cut(s)	56, 327
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	2 cut(s)	83, 446
PsuI	RGATCY	1 cut(s)	505
SaqAI	TTAA	3 cut(s)	6, 45, 191
SatI	GCNGC	3 cut(s)	165, 199, 594
Sau3AI	GATC	7 cut(s)	69, 322, 364, 396, 505, 665, 721
Sau96I	GGNCC	2 cut(s)	83, 446
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	2 cut(s)	58, 329
SfaNI	GCATC	2 cut(s)	605, 720
SinI	GGWCC	2 cut(s)	83, 446
SmiI	ATTTAAAT	1 cut(s)	46
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	3 cut(s)	221, 393, 570
SspI	AATATT	2 cut(s)	38, 353
SspMI	CTAG	2 cut(s)	53, 279
StyD4I	CCNGG	2 cut(s)	56, 327
StyI	CCWWGG	1 cut(s)	294
SwaI	ATTTAAAT	1 cut(s)	46
TaiI	ACGT	2 cut(s)	303, 498
TaqI	TCGA	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	3 cut(s)	6, 45, 191
Tru9I	TTAA	3 cut(s)	6, 45, 191
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	3 cut(s)	164, 198, 593
Tsp45I	GTSAC	1 cut(s)	606
VpaK11BI	GGWCC	2 cut(s)	83, 446
XceI	RCATGY	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	53, 279
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.