Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003642.1

Orthogroup ID

OG0012051

Physical Location & Seq

Genomic Coordinates Forward (+)

52254 .. 53596

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003642.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atggagatatcggaacccgtggtggcttgcatttccgacttggccttcaaatttactgaacaattggcaaaggacctggagttatttactcaacacgctggtcgtaaatctgcaaatatggaagatgtcatactttgtgcacatagaaatgatcatctggctgccttgttgaggtcctaccgtgatgatctgaaagctaaagaacctcagtctgacaggaagaggaagaaagcatcaaagaaggatgacagagcacctgaagatatagtccatgttccagatatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

95

Amino Acids

10.83

Weight (kDa)

6.41

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50930
fragaria_vesca	FvH4_5g09450 FvH4_5g09450 FvH4_5g09450
malus_domestica	MD06G1131300.v1.1 MD14G1147700.v1.1
prunus_persica	Prupe.5G142300_v2.0.a1
pyrus_communis	pycom06g12270 pycom14g12240
rosa_chinensis	RchiOBHm_Chr7g0188741
rosa_laevigata	RLG00000004665
rosa_multiflora	Rmu_sc0003642.1_g000010 Rmu_sc0003854.1_g000008 Rmu_sc0035182.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266080
rosa_rugosa	Rorug06G0493600
rosa_samantha	Rh7BG099600 Rh7CG101300
rosa_wichuraiana	Rw7G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw21I	GWGCWC	2 cut(s)	142, 256
Alw44I	GTGCAC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	42
ApaLI	GTGCAC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	73, 174
AvaII	GGWCC	2 cut(s)	73, 174
BaeGI	GKGCMC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
Bbv12I	GWGCWC	2 cut(s)	142, 256
BbvI	GCAGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	1 cut(s)	286
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	73, 174
BmgT120I	GGNCC	2 cut(s)	73, 174
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	2 cut(s)	142, 256
BslI	CCNNNNNNNGG	1 cut(s)	171
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	142, 256
Bsp143I	GATC	2 cut(s)	151, 187
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	151, 187
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	154, 190
BstMBI	GATC	2 cut(s)	151, 187
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	73, 174
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	4 cut(s)	26, 44, 161, 197
CviKI_1	RGCY	4 cut(s)	26, 44, 161, 197
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	153, 189
DpnII	GATC	2 cut(s)	151, 187
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco32I	GATATC	2 cut(s)	9, 283
Eco47I	GGWCC	2 cut(s)	73, 174
Eco57I	CTGAAG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	169
EcoO109I	RGGNCCY	2 cut(s)	73, 174
EcoRII	CCWGG	1 cut(s)	75
EcoRV	GATATC	2 cut(s)	9, 283
FaeI	CATG	1 cut(s)	275
FaiI	YATR	5 cut(s)	119, 131, 144, 266, 273
FatI	CATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	286
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	4 cut(s)	13, 37, 192, 214
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	55, 235
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	30, 113, 140
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 187
LpnPI	CCDG	6 cut(s)	62, 84, 89, 143, 202, 270
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	286
MalI	GATC	2 cut(s)	153, 189
MboI	GATC	2 cut(s)	151, 187
MboII	GAAGA	4 cut(s)	134, 232, 238, 272
MfeI	CAATTG	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	142, 256
MluCI	AATT	2 cut(s)	50, 62
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	165, 216, 216
MslI	CAYNNNNRTG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	151, 187
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	163
PpuMI	RGGWCCY	2 cut(s)	73, 174
Psp5II	RGGWCCY	2 cut(s)	73, 174
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	73, 174
PspPPI	RGGWCCY	2 cut(s)	73, 174
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	151, 187
Sau96I	GGNCC	2 cut(s)	73, 174
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	142, 256
SetI	ASST	5 cut(s)	78, 176, 199, 208, 259
SfaNI	GCATC	1 cut(s)	242
SinI	GGWCC	2 cut(s)	73, 174
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	50, 62
SspMI	CTAG	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	182
TasI	AATT	2 cut(s)	50, 62
TseI	GCWGC	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	138
VpaK11BI	GGWCC	2 cut(s)	73, 174
XagI	CCTNNNNNAGG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	50
XspI	CTAG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.