Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012051

Physical Location & Seq

Genomic Coordinates Reverse (-)

61077545 .. 61079956

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0493600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTCTGCTGACTCGAGTCCCGCGCGTGCCTCTCCAGCTCGGCGCCCAGCGTGCCCTCTCCCTCCACACCACCACCCCTTCTCTCTACTCCTCCGCCACCTCCTCTCCGGCCACCTATGACCGCCCTCCTCCGCCGGCCACGTCGTCGCCGGCCGGCCTCTCCAAGGCGGCGGAGTTCGTGATCTCCAAGGTCGACGATCTGATGAACTGGGCCCGGCGCGGCTCCATCTGGCCCATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAGATGATGCACACCGGAGCTGCGCGCTACGATTTGGACCGCTTCGGAATCATTTTCCGGCCCAGCCCACGCCAGTCCGATTGCATGATCGTCGCCGGTACTCTCACCAATAAGATGGCCCCCGCTCTCCGCAAGGTTTATGACCAAATGCCTGAGCCTAGATGGGTCATCTCTATGGGGAGCTGTGCAAATGGGGGTGGTTACTACCATTACTCGTATTCCGTTGTTAGGGGTTGTGACAGGATTGTCCCTGTTGATATCTATGTTCCAGGCTGTCCTCCCACTGCTGAGGCCTTACTCTATGGCCTTCTCCAGTTGCAGAAGAAGATCAACCGGCGCAAAGATTTCCTCCTTTGGTGGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

211

Amino Acids

23.37

Weight (kDa)

9.51

Isoelectric Point (pI)

63.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q6	PF01058	86 - 195	3.9e-28	NADH ubiquinone oxidoreductase, 20 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50930
fragaria_vesca	FvH4_5g09450 FvH4_5g09450 FvH4_5g09450
malus_domestica	MD06G1131300.v1.1 MD14G1147700.v1.1
prunus_persica	Prupe.5G142300_v2.0.a1
pyrus_communis	pycom06g12270 pycom14g12240
rosa_chinensis	RchiOBHm_Chr7g0188741
rosa_laevigata	RLG00000004665
rosa_multiflora	Rmu_sc0003642.1_g000010 Rmu_sc0003854.1_g000008 Rmu_sc0035182.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266080
rosa_rugosa	Rorug06G0493600
rosa_samantha	Rh7BG099600 Rh7CG101300
rosa_wichuraiana	Rw7G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	4 cut(s)	25, 27, 222, 292
AcoI	YGGCCR	3 cut(s)	111, 138, 153
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	166, 495
AjiI	CACGTC	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	3 cut(s)	40, 287, 450
AluI	AGCT	3 cut(s)	40, 287, 450
Ama87I	CYCGRG	1 cut(s)	15
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	258, 287
AspLEI	GCGC	7 cut(s)	27, 47, 222, 263, 292, 294, 606
AspS9I	GGNCC	7 cut(s)	213, 214, 234, 304, 327, 385, 627
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	2 cut(s)	304, 627
BaeGI	GKGCMC	2 cut(s)	58, 217
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	245, 274
BccI	CCATC	3 cut(s)	236, 376, 423
BceAI	ACGGC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	217
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	4 cut(s)	171, 223, 259, 288
BlsI	GCNGC	4 cut(s)	172, 224, 260, 289
Bme1390I	CCNGG	2 cut(s)	217, 537
Bme18I	GGWCC	2 cut(s)	304, 627
BmeT110I	CYCGRG	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	144
BmgT120I	GGNCC	7 cut(s)	213, 214, 234, 304, 327, 385, 627
BmiI	GGNNCC	4 cut(s)	46, 215, 226, 387
BmrFI	CCNGG	2 cut(s)	217, 537
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	17
BpmI	CTGGAG	2 cut(s)	20, 563
Bpu10I	CCTNAGC	2 cut(s)	420, 555
BpuMI	CCSGG	1 cut(s)	217
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	165, 189
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 495
Bse118I	RCCGGY	5 cut(s)	136, 151, 155, 362, 600
Bse1I	ACTGG	3 cut(s)	215, 340, 580
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	165, 189
BseLI	CCNNNNNNNGG	2 cut(s)	166, 495
BseMII	CTCAG	2 cut(s)	411, 546
BseNI	ACTGG	3 cut(s)	215, 340, 580
BsePI	GCGCGC	1 cut(s)	290
BseRI	GAGGAG	3 cut(s)	82, 94, 120
BseSI	GKGCMC	2 cut(s)	58, 217
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	245, 274
BseYI	CCCAGC	2 cut(s)	48, 329
Bsh1236I	CGCG	4 cut(s)	25, 27, 222, 292
Bsh1285I	CGRYCG	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	9 cut(s)	110, 137, 152, 156, 217, 282, 325, 363, 601
BslFI	GGGAC	2 cut(s)	5, 500
BslI	CCNNNNNNNGG	2 cut(s)	166, 495
BsmFI	GGGAC	2 cut(s)	5, 500
BsoBI	CYCGRG	1 cut(s)	15
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	58, 217
Bsp143I	GATC	4 cut(s)	183, 199, 354, 594
BspCNI	CTCAG	2 cut(s)	412, 547
BspFNI	CGCG	4 cut(s)	25, 27, 222, 292
BspLI	GGNNCC	4 cut(s)	46, 215, 226, 387
BspT107I	GGYRCC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	392
BsrFI	RCCGGY	5 cut(s)	136, 151, 155, 362, 600
BsrI	ACTGG	3 cut(s)	215, 340, 580
BssAI	RCCGGY	5 cut(s)	136, 151, 155, 362, 600
BssECI	CCNNGG	2 cut(s)	165, 189
BssHII	GCGCGC	1 cut(s)	290
BssMI	GATC	4 cut(s)	183, 199, 354, 594
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	2 cut(s)	165, 189
Bst2UI	CCWGG	1 cut(s)	537
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	7 cut(s)	29, 54, 138, 153, 157, 256, 292
BstDEI	CTNAG	2 cut(s)	420, 555
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstFNI	CGCG	4 cut(s)	25, 27, 222, 292
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	7 cut(s)	27, 47, 222, 263, 292, 294, 606
BstKTI	GATC	4 cut(s)	186, 202, 357, 597
BstMBI	GATC	4 cut(s)	183, 199, 354, 594
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 53, 255, 260
BstNI	CCWGG	1 cut(s)	537
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	215, 535
BstSLI	GKGCMC	2 cut(s)	58, 217
BstUI	CGCG	4 cut(s)	25, 27, 222, 292
BstV1I	GCAGC	2 cut(s)	245, 274
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	7 cut(s)	29, 54, 138, 153, 157, 256, 292
CfoI	GCGC	7 cut(s)	27, 47, 222, 263, 292, 294, 606
Cfr10I	RCCGGY	5 cut(s)	136, 151, 155, 362, 600
Cfr13I	GGNCC	7 cut(s)	213, 214, 234, 304, 327, 385, 627
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	2 cut(s)	238, 352
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	420, 555
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	4 cut(s)	185, 201, 356, 596
DpnII	GATC	4 cut(s)	183, 199, 354, 594
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	3 cut(s)	111, 138, 153
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	3 cut(s)	85, 123, 188
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	165, 189
Eco147I	AGGCCT	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	304, 627
Eco52I	CGGCCG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	165, 189
EcoT38I	GRGCYC	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	165, 189
FaeI	CATG	2 cut(s)	241, 355
FaiI	YATR	7 cut(s)	120, 239, 353, 408, 443, 531, 570
FaqI	GGGAC	2 cut(s)	5, 500
FatI	CATG	2 cut(s)	237, 351
FauI	CCCGC	2 cut(s)	30, 397
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	171, 223, 259, 288
FriOI	GRGCYC	1 cut(s)	217
FseI	GGCCGGCC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	171, 223, 259, 288
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	7 cut(s)	26, 46, 221, 262, 291, 293, 605
GluI	GCNGC	4 cut(s)	171, 223, 259, 288
GsaI	CCCAGC	2 cut(s)	52, 333
GsuI	CTGGAG	2 cut(s)	20, 563
HaeII	RGCGCY	1 cut(s)	48
HapII	CCGG	9 cut(s)	110, 137, 152, 156, 217, 282, 325, 363, 601
HhaI	GCGC	7 cut(s)	27, 47, 222, 263, 292, 294, 606
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	241, 355
Hin6I	GCGC	7 cut(s)	25, 45, 220, 261, 290, 292, 604
HinP1I	GCGC	7 cut(s)	25, 45, 220, 261, 290, 292, 604
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	13, 18, 315
HpaII	CCGG	9 cut(s)	110, 137, 152, 156, 217, 282, 325, 363, 601
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	196, 627
Hpy188I	TCNGA	3 cut(s)	204, 314, 346
Hpy188III	TCNNGA	2 cut(s)	181, 268
Hpy8I	GTNNAC	2 cut(s)	196, 627
Hpy99I	CGWCG	5 cut(s)	148, 151, 200, 269, 362
HpyAV	CCTTC	3 cut(s)	90, 253, 584
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	4 cut(s)	277, 351, 455, 586
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 53, 255, 260
HpyF3I	CTNAG	2 cut(s)	420, 555
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	241, 355
HspAI	GCGC	7 cut(s)	25, 45, 220, 261, 290, 292, 604
KasI	GGCGCC	1 cut(s)	44
KroI	GCCGGC	3 cut(s)	136, 151, 155
KroNI	GCCGGC	3 cut(s)	138, 153, 157
Kzo9I	GATC	4 cut(s)	183, 199, 354, 594
LmnI	GCTCC	3 cut(s)	230, 284, 447
Lsp1109I	GCAGC	2 cut(s)	245, 274
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	467, 503
MalI	GATC	4 cut(s)	185, 201, 356, 596
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	4 cut(s)	183, 199, 354, 594
MboII	GAAGA	2 cut(s)	601, 604
MhlI	GDGCHC	2 cut(s)	58, 217
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	7, 27
MroNI	GCCGGC	3 cut(s)	136, 151, 155
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	9 cut(s)	110, 137, 152, 156, 217, 282, 325, 363, 601
MspR9I	CCNGG	2 cut(s)	217, 537
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	4 cut(s)	25, 27, 222, 292
MwoI	GCNNNNNNNGC	4 cut(s)	37, 53, 255, 260
NaeI	GCCGGC	3 cut(s)	138, 153, 157
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	4 cut(s)	183, 199, 354, 594
NgoMIV	GCCGGC	3 cut(s)	136, 151, 155
NlaIII	CATG	2 cut(s)	241, 355
NlaIV	GGNNCC	4 cut(s)	46, 215, 226, 387
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	503
PaeR7I	CTCGAG	1 cut(s)	15
PauI	GCGCGC	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	560
PdiI	GCCGGC	3 cut(s)	138, 153, 157
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	4 cut(s)	172, 224, 260, 289
PleI	GAGTC	2 cut(s)	7, 26
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	2 cut(s)	7, 26
PshAI	GACNNNNGTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	535
PspFI	CCCAGC	2 cut(s)	48, 329
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	46, 215, 226, 387
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	7 cut(s)	213, 214, 234, 304, 327, 385, 627
PspXI	VCTCGAGB	1 cut(s)	15
PteI	GCGCGC	1 cut(s)	290
RigI	GGCCGGCC	1 cut(s)	159
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	440
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	4 cut(s)	171, 223, 259, 288
Sau3AI	GATC	4 cut(s)	183, 199, 354, 594
Sau96I	GGNCC	7 cut(s)	213, 214, 234, 304, 327, 385, 627
SchI	GAGTC	2 cut(s)	7, 27
ScrFI	CCNGG	2 cut(s)	217, 537
SduI	GDGCHC	2 cut(s)	58, 217
SetI	ASST	9 cut(s)	42, 104, 119, 146, 195, 245, 289, 405, 452
SfaNI	GCATC	1 cut(s)	264
SfoI	GGCGCC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	304, 627
SlaI	CTCGAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SseBI	AGGCCT	1 cut(s)	560
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	2 cut(s)	215, 535
StyI	CCWWGG	2 cut(s)	165, 189
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	16, 195, 267
TauI	GCSGC	2 cut(s)	173, 225
TfiI	GAWTC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	2 cut(s)	258, 287
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	2 cut(s)	304, 627
XagI	CCTNNNNNAGG	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.