Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012051

Physical Location & Seq

Genomic Coordinates Reverse (-)

13199644 .. 13201722

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G142300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGAGGGAAGAAGAAGACTCGGTGAGCGAGCTTTTGAGAGATCGATTCAGAGTCTCCACCATCTCTATCGCCGAAGCCGAAGCGAAGAGAAACGACATGGAAATTTCGGGACCCGTGATGACTTGCATTGCCGATTTGGCCTTCAAATTTACTGAACAGTTGGCAAAGGACCTGGAGTTATTTGCTCAACACGCTGGTCGTAAAACTGCAAACATGGAAGATGTCATACTTTCTGCACATAGAAATGAACATCTGGCTGCCTTATTGAGGTCCTTCAGCAATGATCTGAAAGCCAGAGAGCCCCAATCTGAGAGGAAGAGAAAGAAATCATCAAAAAAGGAAGACCAAGCAACTACCAGTGTAGTCCATATTCCAGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

5.84

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50930
fragaria_vesca	FvH4_5g09450 FvH4_5g09450 FvH4_5g09450
malus_domestica	MD06G1131300.v1.1 MD14G1147700.v1.1
prunus_persica	Prupe.5G142300_v2.0.a1
pyrus_communis	pycom06g12270 pycom14g12240
rosa_chinensis	RchiOBHm_Chr7g0188741
rosa_laevigata	RLG00000004665
rosa_multiflora	Rmu_sc0003642.1_g000010 Rmu_sc0003854.1_g000008 Rmu_sc0035182.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266080
rosa_rugosa	Rorug06G0493600
rosa_samantha	Rh7BG099600 Rh7CG101300
rosa_wichuraiana	Rw7G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	105, 149
AcuI	CTGAAG	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	105, 149
AspS9I	GGNCC	3 cut(s)	113, 172, 273
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	3 cut(s)	113, 172, 273
BanII	GRGCYC	1 cut(s)	306
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BbsI	GAAGAC	2 cut(s)	24, 351
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	3 cut(s)	113, 172, 273
BmgT120I	GGNCC	3 cut(s)	113, 172, 273
BmiI	GGNNCC	2 cut(s)	114, 115
BmrFI	CCNGG	1 cut(s)	176
BpiI	GAAGAC	2 cut(s)	24, 351
BpmI	CTGGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	360
Bse3DI	GCAATG	2 cut(s)	129, 289
BseBI	CCWGG	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	2 cut(s)	129, 289
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	43, 286
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	114, 115
BsrDI	GCAATG	2 cut(s)	129, 289
BsrI	ACTGG	1 cut(s)	360
BssMI	GATC	2 cut(s)	43, 286
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	83, 314
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	312, 384
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	46, 289
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	43, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 194
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	2 cut(s)	24, 351
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	113, 172, 273
ClaI	ATCGAT	1 cut(s)	46
CviAII	CATG	2 cut(s)	100, 217
CviJI	RGCY	6 cut(s)	34, 80, 143, 260, 296, 304
CviKI_1	RGCY	6 cut(s)	34, 80, 143, 260, 296, 304
DdeI	CTNAG	2 cut(s)	312, 384
DpnI	GATC	2 cut(s)	45, 288
DpnII	GATC	2 cut(s)	43, 286
Eam1104I	CTCTTC	2 cut(s)	83, 314
EarI	CTCTTC	2 cut(s)	83, 314
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	113, 172, 273
Eco57I	CTGAAG	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoO109I	RGGNCCY	3 cut(s)	113, 172, 273
EcoRII	CCWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	2 cut(s)	103, 220
FaiI	YATR	5 cut(s)	101, 218, 230, 243, 372
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	2 cut(s)	99, 216
Fnu4HI	GCNGC	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	103, 220
HinfI	GANTC	4 cut(s)	20, 48, 54, 380
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	3 cut(s)	53, 291, 313
Hpy188III	TCNNGA	2 cut(s)	111, 377
HpyAV	CCTTC	2 cut(s)	154, 286
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	129, 212, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 194
HpyF3I	CTNAG	2 cut(s)	312, 384
Hsp92II	CATG	2 cut(s)	103, 220
KflI	GGGWCCC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	43, 286
LpnPI	CCDG	6 cut(s)	161, 183, 188, 242, 310, 373
Lsp1109I	GCAGC	1 cut(s)	247
MalI	GATC	2 cut(s)	45, 288
MboI	GATC	2 cut(s)	43, 286
MboII	GAAGA	7 cut(s)	23, 26, 29, 100, 233, 331, 356
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	2 cut(s)	105, 149
MlyI	GAGTC	2 cut(s)	14, 63
MnlI	CCTC	2 cut(s)	264, 309
MslI	CAYNNNNRTG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	140, 194
NdeII	GATC	2 cut(s)	43, 286
NlaIII	CATG	2 cut(s)	103, 220
NlaIV	GGNNCC	2 cut(s)	114, 115
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	48, 380
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	14, 62
PpsI	GAGTC	2 cut(s)	14, 62
PpuMI	RGGWCCY	3 cut(s)	113, 172, 273
Psp5II	RGGWCCY	3 cut(s)	113, 172, 273
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	114, 115
PspPI	GGNCC	3 cut(s)	113, 172, 273
PspPPI	RGGWCCY	3 cut(s)	113, 172, 273
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	43, 286
Sau96I	GGNCC	3 cut(s)	113, 172, 273
SchI	GAGTC	2 cut(s)	14, 63
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	3 cut(s)	36, 177, 275
SinI	GGWCC	3 cut(s)	113, 172, 273
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	105, 149
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	46
TasI	AATT	2 cut(s)	105, 149
TfiI	GAWTC	2 cut(s)	48, 380
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	3 cut(s)	113, 172, 273
XagI	CCTNNNNNAGG	1 cut(s)	268
XapI	RAATTY	2 cut(s)	105, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.