Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012051

Physical Location & Seq

Genomic Coordinates Reverse (-)

8137232 .. 8139184

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16855

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGAGAGAAGAAGACGACTCGGTGAGCGAGGTTCTCAGAGATCGATTCAGACTCTCCACCATCTCTATCGCCGAAGCCGAAGCGAAGAGAAGCGGCATGGAGATATCGGAACCCGTGGTGGCTTGCATTTCCGACTTGGCCTTCAAATTTACTGAACAATTGGCAAAGGACCTGGAGTTATTTACTCAACACGCTGGTCGTAAATCTGCAAATATGGAAGATGTCATACTTTGTGCACATAGAAATGAACATCTGGCTGCCTTGTTGAGGTCCTACCGTGATGATCTGAAAGCTAAAGAACCTCAGTCTGACAGGAAGAGGAAGAAAGCATCAAAGAAGGATGACAGAGCACCTGAAGATATAGTCCATGTTCCAGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

128

Amino Acids

14.61

Weight (kDa)

5.62

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-S	PF15630	13 - 86	2.8e-17	CENP-S protein
CENP-T_C	PF15511	29 - 86	1.1e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50930
fragaria_vesca	FvH4_5g09450 FvH4_5g09450 FvH4_5g09450
malus_domestica	MD06G1131300.v1.1 MD14G1147700.v1.1
prunus_persica	Prupe.5G142300_v2.0.a1
pyrus_communis	pycom06g12270 pycom14g12240
rosa_chinensis	RchiOBHm_Chr7g0188741
rosa_laevigata	RLG00000004665
rosa_multiflora	Rmu_sc0003642.1_g000010 Rmu_sc0003854.1_g000008 Rmu_sc0035182.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266080
rosa_rugosa	Rorug06G0493600
rosa_samantha	Rh7BG099600 Rh7CG101300
rosa_wichuraiana	Rw7G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw21I	GWGCWC	2 cut(s)	241, 355
Alw44I	GTGCAC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	172, 273
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	172, 273
BaeGI	GKGCMC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	241, 355
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	385
BisI	GCNGC	2 cut(s)	97, 261
BlsI	GCNGC	2 cut(s)	98, 262
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	172, 273
BmgT120I	GGNCC	2 cut(s)	172, 273
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	52, 320
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	241, 355
BslI	CCNNNNNNNGG	1 cut(s)	270
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	241, 355
Bsp143I	GATC	2 cut(s)	43, 286
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	51, 319
BspDI	ATCGAT	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	43, 286
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	83, 314
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	38, 306
BstDSI	CCRYGG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	2 cut(s)	46, 289
BstMBI	GATC	2 cut(s)	43, 286
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	172, 273
ClaI	ATCGAT	1 cut(s)	46
CviAII	CATG	2 cut(s)	100, 371
CviJI	RGCY	5 cut(s)	80, 125, 143, 260, 296
CviKI_1	RGCY	5 cut(s)	80, 125, 143, 260, 296
DdeI	CTNAG	2 cut(s)	38, 306
DpnI	GATC	2 cut(s)	45, 288
DpnII	GATC	2 cut(s)	43, 286
Eam1104I	CTCTTC	2 cut(s)	83, 314
EarI	CTCTTC	2 cut(s)	83, 314
Eco32I	GATATC	2 cut(s)	108, 382
Eco47I	GGWCC	2 cut(s)	172, 273
Eco57I	CTGAAG	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoO109I	RGGNCCY	2 cut(s)	172, 273
EcoRII	CCWGG	1 cut(s)	174
EcoRV	GATATC	2 cut(s)	108, 382
FaeI	CATG	2 cut(s)	103, 374
FaiI	YATR	6 cut(s)	101, 218, 230, 243, 365, 372
FatI	CATG	2 cut(s)	99, 370
Fnu4HI	GCNGC	2 cut(s)	97, 261
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	2 cut(s)	97, 261
FspBI	CTAG	1 cut(s)	385
GluI	GCNGC	2 cut(s)	97, 261
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	103, 374
HinfI	GANTC	3 cut(s)	20, 48, 54
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	6 cut(s)	41, 53, 112, 136, 291, 313
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	154, 334
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	129, 212, 239
HpyF3I	CTNAG	2 cut(s)	38, 306
Hsp92II	CATG	2 cut(s)	103, 374
Kzo9I	GATC	2 cut(s)	43, 286
LpnPI	CCDG	6 cut(s)	161, 183, 188, 242, 301, 369
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	1 cut(s)	385
MalI	GATC	2 cut(s)	45, 288
MboI	GATC	2 cut(s)	43, 286
MboII	GAAGA	7 cut(s)	23, 26, 100, 233, 331, 337, 371
MfeI	CAATTG	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	241, 355
MluCI	AATT	2 cut(s)	149, 161
MlyI	GAGTC	2 cut(s)	14, 48
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	4 cut(s)	25, 264, 315, 315
MslI	CAYNNNNRTG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	176
NdeII	GATC	2 cut(s)	43, 286
NlaIII	CATG	2 cut(s)	103, 374
NlaIV	GGNNCC	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	98, 262
PleI	GAGTC	2 cut(s)	14, 48
PpsI	GAGTC	2 cut(s)	14, 48
PpuMI	RGGWCCY	2 cut(s)	172, 273
Psp5II	RGGWCCY	2 cut(s)	172, 273
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	172, 273
PspPPI	RGGWCCY	2 cut(s)	172, 273
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	2 cut(s)	97, 261
Sau3AI	GATC	2 cut(s)	43, 286
Sau96I	GGNCC	2 cut(s)	172, 273
SchI	GAGTC	2 cut(s)	14, 48
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	241, 355
SetI	ASST	6 cut(s)	36, 177, 275, 298, 307, 358
SfaNI	GCATC	1 cut(s)	341
SinI	GGWCC	2 cut(s)	172, 273
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	149, 161
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	46
TasI	AATT	2 cut(s)	149, 161
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	48
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	264
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	172, 273
XagI	CCTNNNNNAGG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.