Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012051

Physical Location & Seq

Genomic Coordinates Reverse (-)

24059252 .. 24060948

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1147700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGATTTCGGGCCCCGTGATGGCTTGCATTGCCGATTTGGCTTTCAAGTATACAGAACAGTTGGCAAAGGACCTCGAGTTATTTTCTCAACACGGTGGTCGTAAAACTGCAAACATGGAAGACGTCATACTTTCTGCACACAGAAACGAACATCTGGCCGCCTTGTTGAGGTCCTTCTGCAACGATCTGAAAGCCAAAGAACCACAATCTGAGAGGAACAGAAAGAAATCATCAAAGAGGGAAGACCAAGCAACTACCAGTGTAGTACATATTCCAGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

96

Amino Acids

10.65

Weight (kDa)

6.9

Isoelectric Point (pI)

57.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-S	PF15630	2 - 53	3.3e-14	CENP-S protein
CENP-T_C	PF15511	3 - 53	4.3e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50930
fragaria_vesca	FvH4_5g09450 FvH4_5g09450 FvH4_5g09450
malus_domestica	MD06G1131300.v1.1 MD14G1147700.v1.1
prunus_persica	Prupe.5G142300_v2.0.a1
pyrus_communis	pycom06g12270 pycom14g12240
rosa_chinensis	RchiOBHm_Chr7g0188741
rosa_laevigata	RLG00000004665
rosa_multiflora	Rmu_sc0003642.1_g000010 Rmu_sc0003854.1_g000008 Rmu_sc0035182.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266080
rosa_rugosa	Rorug06G0493600
rosa_samantha	Rh7BG099600 Rh7CG101300
rosa_wichuraiana	Rw7G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	1 cut(s)	162
AcoI	YGGCCR	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	22, 171
AgsI	TTSAA	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	13, 159
ApaI	GGGCCC	1 cut(s)	17
AspS9I	GGNCC	4 cut(s)	13, 14, 73, 174
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	73, 174
BaeGI	GKGCMC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BbsI	GAAGAC	2 cut(s)	129, 252
BccI	CCATC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	73, 174
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	4 cut(s)	13, 14, 73, 174
BmiI	GGNNCC	2 cut(s)	15, 16
BpiI	GAAGAC	2 cut(s)	129, 252
BsaHI	GRCGYC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 171
Bse1I	ACTGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	22, 171
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	15, 161
BsiHKCI	CYCGRG	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	22, 171
BsnI	GGCC	2 cut(s)	15, 161
BsoBI	CYCGRG	1 cut(s)	77
Bsp120I	GGGCCC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	2 cut(s)	15, 161
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	15, 16
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	187
BssNAI	GTATAC	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	63, 98
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	213, 285
BstENI	CCTNNNNNAGG	1 cut(s)	169
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 41
BstSLI	GKGCMC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	129, 252
BstZ17I	GTATAC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	15, 161
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	13, 14, 73, 174
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	5 cut(s)	15, 26, 44, 161, 197
CviKI_1	RGCY	5 cut(s)	15, 26, 44, 161, 197
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	2 cut(s)	213, 285
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	73, 174
Eco88I	CYCGRG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	169
EcoO109I	RGGNCCY	3 cut(s)	14, 73, 174
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	1 cut(s)	121
FaiI	YATR	4 cut(s)	54, 119, 131, 273
FatI	CATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	15, 161
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	192, 214
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	63, 98
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	30, 113, 140, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 41
HpyF3I	CTNAG	2 cut(s)	213, 285
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	2 cut(s)	143, 274
MaeII	ACGT	1 cut(s)	126
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	134, 257
MhlI	GDGCHC	1 cut(s)	17
MnlI	CCTC	4 cut(s)	86, 165, 210, 234
MwoI	GCNNNNNNNGC	2 cut(s)	32, 41
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	15, 16
PaeR7I	CTCGAG	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	163
PpuMI	RGGWCCY	2 cut(s)	73, 174
Psp5II	RGGWCCY	2 cut(s)	73, 174
PspN4I	GGNNCC	2 cut(s)	15, 16
PspOMI	GGGCCC	1 cut(s)	13
PspPI	GGNCC	4 cut(s)	13, 14, 73, 174
PspPPI	RGGWCCY	2 cut(s)	73, 174
PspXI	VCTCGAGB	1 cut(s)	77
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	4 cut(s)	13, 14, 73, 174
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	3 cut(s)	78, 129, 176
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	73, 174
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SsiI	CCGC	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	63, 98
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	78
TatI	WGTACW	1 cut(s)	268
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	281
TscAI	CASTG	1 cut(s)	268
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	73, 174
XagI	CCTNNNNNAGG	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.