Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012051

Physical Location & Seq

Genomic Coordinates Forward (+)

5475753 .. 5477538

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGATATCCGGACCAGTGATGGCTTGTATTTCCGACCTGGCCTTCAAATTTACTGAACAATTGGCAAAGGACCTGGAGTTATTTACTCACCACGCTGGTCGTAAATCTGCAAATATGGAAGATGTCATACTTTGTGCTCATAGAAATGAACATCTAGCTGCCTTGTTGAGGTCCTACCGTGATGATCTGAAGGCTAAAGAACCTCAGTCTGACAGGAAGAGGAAGAAAGCATTGAAGAAGGATGACAGAGCACCTGAAGATATAGTCCCTATTCCAGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

6.9

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-S	PF15630	2 - 53	3.2e-14	CENP-S protein
CENP-T_C	PF15511	3 - 53	2.3e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50930
fragaria_vesca	FvH4_5g09450 FvH4_5g09450 FvH4_5g09450
malus_domestica	MD06G1131300.v1.1 MD14G1147700.v1.1
prunus_persica	Prupe.5G142300_v2.0.a1
pyrus_communis	pycom06g12270 pycom14g12240
rosa_chinensis	RchiOBHm_Chr7g0188741
rosa_laevigata	RLG00000004665
rosa_multiflora	Rmu_sc0003642.1_g000010 Rmu_sc0003854.1_g000008 Rmu_sc0035182.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266080
rosa_rugosa	Rorug06G0493600
rosa_samantha	Rh7BG099600 Rh7CG101300
rosa_wichuraiana	Rw7G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	2 cut(s)	212, 279
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	49, 238
AjnI	CCWGG	2 cut(s)	39, 75
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	2 cut(s)	142, 256
Aor13HI	TCCGGA	1 cut(s)	11
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	50
AspS9I	GGNCC	3 cut(s)	14, 73, 174
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	3 cut(s)	14, 73, 174
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
Bbv12I	GWGCWC	2 cut(s)	142, 256
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	41, 77
BfaI	CTAG	2 cut(s)	158, 286
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	41, 77
Bme18I	GGWCC	3 cut(s)	14, 73, 174
BmgT120I	GGNCC	3 cut(s)	14, 73, 174
BmrFI	CCNGG	2 cut(s)	41, 77
BpmI	CTGGAG	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	41, 77
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	2 cut(s)	142, 256
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	142, 256
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	220
BspEI	TCCGGA	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	41, 77
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	207
BstENI	CCTNNNNNAGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	2 cut(s)	41, 77
BstSCI	CCNGG	2 cut(s)	39, 75
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	14, 73, 174
CviJI	RGCY	4 cut(s)	26, 44, 161, 197
CviKI_1	RGCY	4 cut(s)	26, 44, 161, 197
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	14, 73, 174
Eco57I	CTGAAG	2 cut(s)	212, 279
EcoNI	CCTNNNNNAGG	1 cut(s)	169
EcoO109I	RGGNCCY	2 cut(s)	73, 174
EcoRII	CCWGG	2 cut(s)	39, 75
EcoRV	GATATC	1 cut(s)	9
FaiI	YATR	4 cut(s)	119, 131, 144, 266
FaqI	GGGAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	158, 286
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	12
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	37, 192, 214
Hpy188III	TCNNGA	2 cut(s)	12, 278
HpyAV	CCTTC	3 cut(s)	55, 187, 235
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	25, 26, 30, 53, 62, 84, 89, 202, 270
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	158, 286
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	5 cut(s)	134, 232, 238, 250, 272
MfeI	CAATTG	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	142, 256
MluCI	AATT	2 cut(s)	50, 62
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	165, 216, 216
MroI	TCCGGA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	41, 77
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	2 cut(s)	41, 77
NdeII	GATC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	163
PpuMI	RGGWCCY	2 cut(s)	73, 174
Psp5II	RGGWCCY	2 cut(s)	73, 174
Psp6I	CCWGG	2 cut(s)	39, 75
PspGI	CCWGG	2 cut(s)	39, 75
PspPI	GGNCC	3 cut(s)	14, 73, 174
PspPPI	RGGWCCY	2 cut(s)	73, 174
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	3 cut(s)	14, 73, 174
ScrFI	CCNGG	2 cut(s)	41, 77
SduI	GDGCHC	2 cut(s)	142, 256
SetI	ASST	6 cut(s)	42, 78, 163, 176, 208, 259
SinI	GGWCC	3 cut(s)	14, 73, 174
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	50, 62
SspMI	CTAG	2 cut(s)	158, 286
StyD4I	CCNGG	2 cut(s)	39, 75
TaaI	ACNGT	1 cut(s)	182
TasI	AATT	2 cut(s)	50, 62
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	3 cut(s)	14, 73, 174
XagI	CCTNNNNNAGG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	50
XspI	CTAG	2 cut(s)	158, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.