Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012051

Physical Location & Seq

Genomic Coordinates Reverse (-)

27520886 .. 27522415

Gene Structure 1530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1131300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGAGGGAGGAAGACGACTCGGTGAGCGAGCTTCTCAGGGATCGATTCAGACTCTCCACCATCCATATCGCCGAAGCCGAAGCGAAGCGAAACGACATGGAGATTTCGGGCCCAGTGATGGCTTGCATTGCCGATTTGGCCTTCAAGTATACAGAACAGCTGGCAAAGGACCTCGAGTTATTTTCTCAACACGGTGGTCGTAAAACTGCAAACATGGAAGATGTCATACTCTCTGTGCATAGAAACGAACATCTGGCCGCCTTGTTGAGGTTGTTCTGCAATGATCTGAAAGCGAAAGAACCACAATCCGAGAGGAAGAGAAAGAAAGCATCAAAGAAGGAAGACCAAGCAACTACCAGTGTAGTACATATTCCAGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-S

Protein Analysis

129

Amino Acids

14.59

Weight (kDa)

5.96

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-S	PF15630	13 - 86	5.8e-17	CENP-S protein
CENP-T_C	PF15511	27 - 87	1.8e-09	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50930
fragaria_vesca	FvH4_5g09450 FvH4_5g09450 FvH4_5g09450
malus_domestica	MD06G1131300.v1.1 MD14G1147700.v1.1
prunus_persica	Prupe.5G142300_v2.0.a1
pyrus_communis	pycom06g12270 pycom14g12240
rosa_chinensis	RchiOBHm_Chr7g0188741
rosa_laevigata	RLG00000004665
rosa_multiflora	Rmu_sc0003642.1_g000010 Rmu_sc0003854.1_g000008 Rmu_sc0035182.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266080
rosa_rugosa	Rorug06G0493600
rosa_samantha	Rh7BG099600 Rh7CG101300
rosa_wichuraiana	Rw7G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	258
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	121, 270
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	2 cut(s)	34, 163
AluI	AGCT	2 cut(s)	34, 163
AlwI	GGATC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	112, 141, 258
ApaI	GGGCCC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	112, 113, 172
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BbsI	GAAGAC	2 cut(s)	21, 351
BccI	CCATC	2 cut(s)	71, 115
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	112, 113, 172
BmiI	GGNNCC	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	2 cut(s)	21, 351
Bsa29I	ATCGAT	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 270
Bse1I	ACTGG	2 cut(s)	116, 360
Bse3DI	GCAATG	2 cut(s)	129, 289
BseCI	ATCGAT	1 cut(s)	46
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	121, 270
BseMI	GCAATG	2 cut(s)	129, 289
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	2 cut(s)	116, 360
BseSI	GKGCMC	1 cut(s)	116
BshFI	GGCC	3 cut(s)	114, 143, 260
BshVI	ATCGAT	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	121, 270
BsnI	GGCC	3 cut(s)	114, 143, 260
BsoBI	CYCGRG	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	43, 286
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	114, 143, 260
BspCNI	CTCAG	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	51
BsrDI	GCAATG	2 cut(s)	129, 289
BsrI	ACTGG	2 cut(s)	116, 360
BssMI	GATC	2 cut(s)	43, 286
BssNAI	GTATAC	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	32, 127, 165
BstDEI	CTNAG	2 cut(s)	38, 384
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	46, 289
BstMBI	GATC	2 cut(s)	43, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 140
BstSLI	GKGCMC	1 cut(s)	116
BstV2I	GAAGAC	2 cut(s)	21, 351
BstZ17I	GTATAC	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	114, 143, 260
BsuTUI	ATCGAT	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	123, 367
Cac8I	GCNNGC	3 cut(s)	32, 127, 165
Cfr13I	GGNCC	3 cut(s)	112, 113, 172
ClaI	ATCGAT	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	2 cut(s)	100, 217
CviJI	RGCY	7 cut(s)	34, 80, 114, 125, 143, 163, 260
CviKI_1	RGCY	7 cut(s)	34, 80, 114, 125, 143, 163, 260
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	2 cut(s)	38, 384
DpnI	GATC	2 cut(s)	45, 288
DpnII	GATC	2 cut(s)	43, 286
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	2 cut(s)	103, 220
FaiI	YATR	7 cut(s)	69, 101, 153, 218, 230, 243, 372
FatI	CATG	2 cut(s)	99, 216
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	114, 143, 260
Hin1II	CATG	2 cut(s)	103, 220
HinfI	GANTC	4 cut(s)	20, 48, 54, 380
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	3 cut(s)	53, 291, 313
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	1 cut(s)	153
HpyAV	CCTTC	2 cut(s)	154, 334
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	129, 212, 241, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 140
HpyF3I	CTNAG	2 cut(s)	38, 384
Hsp92II	CATG	2 cut(s)	103, 220
Kzo9I	GATC	2 cut(s)	43, 286
LpnPI	CCDG	5 cut(s)	25, 129, 149, 242, 373
LweI	GCATC	1 cut(s)	341
MalI	GATC	2 cut(s)	45, 288
MboI	GATC	2 cut(s)	43, 286
MboII	GAAGA	4 cut(s)	26, 233, 331, 356
MhlI	GDGCHC	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	14, 48
MnlI	CCTC	4 cut(s)	4, 185, 264, 309
MspA1I	CMGCKG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	131, 140
NdeII	GATC	2 cut(s)	43, 286
NlaIII	CATG	2 cut(s)	103, 220
NlaIV	GGNNCC	1 cut(s)	114
PaeR7I	CTCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	48, 380
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	14, 48
PpsI	GAGTC	2 cut(s)	14, 48
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	114
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	112, 113, 172
PspPPI	RGGWCCY	1 cut(s)	172
PspXI	VCTCGAGB	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	43, 286
Sau96I	GGNCC	3 cut(s)	112, 113, 172
SchI	GAGTC	2 cut(s)	14, 48
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	4 cut(s)	36, 165, 177, 275
SfaNI	GCATC	1 cut(s)	341
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	172
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	46, 177
TatI	WGTACW	1 cut(s)	367
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	48, 380
TscAI	CASTG	2 cut(s)	123, 367
TspRI	CASTG	2 cut(s)	123, 367
VpaK11BI	GGWCC	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.