Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009467

Physical Location & Seq

Genomic Coordinates Forward (+)

20750513 .. 20752115

Gene Structure 1603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTACCCGAAAAGCTCTGATCAACGTTCACCGGATCATTCGCTCCACCGCCGTGGTTGGCCGGAGCTCTATCATTCCTGCCGCCGCTAACCGGTCATATCCTATTATATTCCGGAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGAGAACACTGCGTCTGCCCAGAATTTCGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATAGGAGCAAGCAAAGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGAATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCTAATTCATGTCCTCAATTTGGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGGAACAGCCTCCGGAAGCAGTGAGTTCAAATCCGGTGTTCTCGGCGTTACACGAGAAAGTCATGAAGAATCTGAACAAGCATGCAGCGCCAGAGACTCGTGCAGCGGCTGGACAGCCCTGGGTCAGAGGATGGGACGATTTCAAGAGAGGCCGTGATGCTCCCATTTCAGGGAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016043 GO:0016310 GO:0016999 GO:0017144 GO:0018065 GO:0018293 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0022607 GO:0022900 GO:0022904 GO:0033108 GO:0034552 GO:0034553 GO:0034622 GO:0034641 GO:0036211 GO:0042773 GO:0042775 GO:0043170 GO:0043412 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sdh5

Protein Analysis

188

Amino Acids

21.28

Weight (kDa)

9.16

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sdh5	PF03937	74 - 121	3.2e-12	Flavinator of succinate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51040 AT5G51040 AT5G51040 AT5G51040
fragaria_vesca	FvH4_5g09730 FvH4_5g09730
malus_domestica	MD06G1128800.v1.1 MD14G1145800.v1.1
prunus_persica	Prupe.5G140100_v2.0.a1 Prupe.5G140100_v2.0.a1
pyrus_communis	pycom06g12040 pycom14g12080
rosa_chinensis	RchiOBHm_Chr7g0188501
rosa_laevigata	RLG00000004689
rosa_multiflora	Rmu_sc0001576.1_g000007 Rmu_sc0016427.1_g000005
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095600 Rh7BG097400 Rh7CG098200 Rh7DG097500
rosa_wichuraiana	Rw7G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	114, 397
AciI	CCGC	4 cut(s)	51, 84, 87, 491
AclI	AACGTT	1 cut(s)	27
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	172
AfiI	CCNNNNNNNGG	4 cut(s)	93, 349, 554, 555
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	414, 529
AjnI	CCWGG	1 cut(s)	503
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	17, 69
AluI	AGCT	2 cut(s)	17, 69
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	44
AlwNI	CAGNNNCTG	1 cut(s)	494
Aor13HI	TCCGGA	2 cut(s)	114, 397
AoxI	GGCC	2 cut(s)	61, 535
ApeKI	GCWGC	2 cut(s)	470, 488
ApoI	RAATTY	1 cut(s)	172
AsiGI	ACCGGT	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	71
BauI	CACGAG	2 cut(s)	437, 483
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	482, 500
BccI	CCATC	1 cut(s)	510
BceAI	ACGGC	2 cut(s)	38, 522
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	5 cut(s)	84, 87, 471, 489, 492
BlsI	GCNGC	5 cut(s)	85, 88, 472, 490, 493
Bme1390I	CCNGG	1 cut(s)	505
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	1 cut(s)	532
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	54, 306, 503, 504
BsaWI	WCCGGW	5 cut(s)	33, 93, 114, 397, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 349, 554, 555
Bse118I	RCCGGY	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	183
BseAI	TCCGGA	2 cut(s)	114, 397
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	4 cut(s)	54, 306, 503, 504
BseGI	GGATG	1 cut(s)	521
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	4 cut(s)	93, 349, 554, 555
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	482, 500
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	63, 537
BshTI	ACCGGT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	6 cut(s)	34, 64, 94, 115, 398, 419
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	4 cut(s)	93, 349, 554, 555
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	63, 537
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp13I	TCCGGA	2 cut(s)	114, 397
Bsp143I	GATC	6 cut(s)	21, 36, 184, 216, 265, 361
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	4 cut(s)	51, 84, 87, 491
BspANI	GGCC	2 cut(s)	63, 537
BspEI	TCCGGA	2 cut(s)	114, 397
BspHI	TCATGA	1 cut(s)	447
BspPI	GGATC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	4 cut(s)	54, 306, 503, 504
BssMI	GATC	6 cut(s)	21, 36, 184, 216, 265, 361
BssSI	CACGAG	2 cut(s)	437, 483
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	2 cut(s)	437, 483
Bst2UI	CCWGG	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	242, 468
BstDSI	CCRYGG	2 cut(s)	54, 306
BstF5I	GGATG	1 cut(s)	521
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	6 cut(s)	24, 39, 187, 219, 268, 364
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	6 cut(s)	21, 36, 184, 216, 265, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	472
BstNI	CCWGG	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	503
BstV1I	GCAGC	2 cut(s)	482, 500
BstXI	CCANNNNNNTGG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	63, 537
BtgI	CCRYGG	2 cut(s)	54, 306
BtsCI	GGATG	1 cut(s)	521
BtsI	GCAGTG	2 cut(s)	156, 411
BtsIMutI	CAGTG	2 cut(s)	156, 411
Cac8I	GCNNGC	2 cut(s)	242, 468
CaiI	CAGNNNCTG	1 cut(s)	494
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	93
CseI	GACGC	1 cut(s)	150
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	4 cut(s)	307, 338, 448, 467
CviJI	RGCY	9 cut(s)	5, 17, 63, 69, 376, 394, 494, 502, 537
CviKI_1	RGCY	9 cut(s)	5, 17, 63, 69, 376, 394, 494, 502, 537
DpnI	GATC	6 cut(s)	23, 38, 186, 218, 267, 363
DpnII	GATC	6 cut(s)	21, 36, 184, 216, 265, 361
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	4 cut(s)	310, 341, 451, 470
FaiI	YATR	7 cut(s)	100, 110, 234, 308, 339, 449, 468
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	4 cut(s)	306, 337, 447, 466
FbaI	TGATCA	1 cut(s)	21
Fnu4HI	GCNGC	5 cut(s)	84, 87, 471, 489, 492
FokI	GGATG	1 cut(s)	528
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	5 cut(s)	84, 87, 471, 489, 492
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	5 cut(s)	84, 87, 471, 489, 492
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	63, 537
HapII	CCGG	6 cut(s)	34, 64, 94, 115, 398, 419
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	4 cut(s)	310, 341, 451, 470
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	4 cut(s)	141, 454, 481, 559
HpaII	CCGG	6 cut(s)	34, 64, 94, 115, 398, 419
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	21, 459, 512
Hpy188III	TCNNGA	5 cut(s)	115, 367, 398, 448, 529
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	470, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	472
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	310, 341, 451, 470
HspAI	GCGC	1 cut(s)	473
Kpn2I	TCCGGA	2 cut(s)	114, 397
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	6 cut(s)	21, 36, 184, 216, 265, 361
LmnI	GCTCC	4 cut(s)	50, 66, 237, 550
Lsp1109I	GCAGC	2 cut(s)	482, 500
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	6 cut(s)	23, 38, 186, 218, 267, 363
MboI	GATC	6 cut(s)	21, 36, 184, 216, 265, 361
MboII	GAAGA	4 cut(s)	136, 209, 222, 463
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	5 cut(s)	172, 280, 301, 333, 346
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	6 cut(s)	242, 283, 353, 405, 506, 527
MroI	TCCGGA	2 cut(s)	114, 397
MseI	TTAA	2 cut(s)	300, 324
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	6 cut(s)	34, 64, 94, 115, 398, 419
MspR9I	CCNGG	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	6 cut(s)	21, 36, 184, 216, 265, 361
NlaIII	CATG	4 cut(s)	310, 341, 451, 470
NmeAIII	GCCGAG	1 cut(s)	407
NspI	RCATGY	1 cut(s)	470
OliI	CACNNNNGTG	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	470
PagI	TCATGA	1 cut(s)	447
PasI	CCCWGGG	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	141, 454, 559
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	5 cut(s)	85, 88, 472, 490, 493
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Psp124BI	GAGCTC	1 cut(s)	71
Psp1406I	AACGTT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PstNI	CAGNNNCTG	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	300, 324
SatI	GCNGC	5 cut(s)	84, 87, 471, 489, 492
Sau3AI	GATC	6 cut(s)	21, 36, 184, 216, 265, 361
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	3 cut(s)	19, 30, 71
SfaNI	GCATC	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	5 cut(s)	172, 280, 301, 333, 346
SsiI	CCGC	4 cut(s)	51, 84, 87, 491
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	1 cut(s)	306
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	177
TasI	AATT	5 cut(s)	172, 280, 301, 333, 346
TauI	GCSGC	3 cut(s)	86, 89, 494
TfiI	GAWTC	3 cut(s)	141, 454, 559
Tru1I	TTAA	2 cut(s)	300, 324
Tru9I	TTAA	2 cut(s)	300, 324
TscAI	CASTG	2 cut(s)	163, 411
TseI	GCWGC	2 cut(s)	470, 488
TspDTI	ATGAA	2 cut(s)	326, 464
TspRI	CASTG	2 cut(s)	163, 411
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.