Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016427.1

Orthogroup ID

OG0009467

Physical Location & Seq

Genomic Coordinates Forward (+)

32135 .. 33887

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016427.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggcaagcttgagaagaggtttgatcacagcccaccgagctctcaaatccagcaactccatctcacccactcagacccttctcaggcctcgatattgtagtggcttagttcagcgctcttattctactgataacaccagcaatctacatatcgacctctctaatgaagagagcaaacggcggttatgtaataggttattgtacaggagcaaacagagagggttcttggaattggatttggttctgggtaaatgggtggaggatcatattcattccatggatgaaaatggaattaaatctcttgtggatgttcttgacctggaaaatcctgatctatggaagtggttaagtggccaggagcaaccacctgaggcactcacaactaatccggttttcactgcagtgcgcagcaaggttacaaacaacctggacagctatgctgctcctgagacacgagccacacccgggaacccatgggttagaggatgggatgatataaagaaatatcagggcggtcccataactgggaaccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016043 GO:0016310 GO:0016999 GO:0017144 GO:0018065 GO:0018293 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0022607 GO:0022900 GO:0022904 GO:0033108 GO:0034552 GO:0034553 GO:0034622 GO:0034641 GO:0036211 GO:0042773 GO:0042775 GO:0043170 GO:0043412 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sdh5

Protein Analysis

178

Amino Acids

20.15

Weight (kDa)

8.93

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51040 AT5G51040 AT5G51040 AT5G51040
fragaria_vesca	FvH4_5g09730 FvH4_5g09730
malus_domestica	MD06G1128800.v1.1 MD14G1145800.v1.1
prunus_persica	Prupe.5G140100_v2.0.a1 Prupe.5G140100_v2.0.a1
pyrus_communis	pycom06g12040 pycom14g12080
rosa_chinensis	RchiOBHm_Chr7g0188501
rosa_laevigata	RLG00000004689
rosa_multiflora	Rmu_sc0001576.1_g000007 Rmu_sc0016427.1_g000005
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095600 Rh7BG097400 Rh7CG098200 Rh7DG097500
rosa_wichuraiana	Rw7G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	407
AciI	CCGC	2 cut(s)	181, 513
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	352
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	116
AfiI	CCNNNNNNNGG	4 cut(s)	84, 465, 524, 525
AjnI	CCWGG	3 cut(s)	318, 354, 426
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	3 cut(s)	9, 41, 435
AluI	AGCT	3 cut(s)	9, 41, 435
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	464
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	2 cut(s)	86, 352
ApeKI	GCWGC	2 cut(s)	408, 440
AspLEI	GCGC	2 cut(s)	117, 408
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	2 cut(s)	465, 466
AsuHPI	GGTGA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	515
AxyI	CCTNAGG	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	420, 427
BccI	CCATC	2 cut(s)	68, 480
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	3 cut(s)	320, 356, 428
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	2 cut(s)	465, 466
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	2 cut(s)	409, 441
BlsI	GCNGC	2 cut(s)	410, 442
Bme1390I	CCNGG	5 cut(s)	320, 356, 428, 465, 466
Bme18I	GGWCC	1 cut(s)	515
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	3 cut(s)	470, 517, 530
BmrFI	CCNGG	5 cut(s)	320, 356, 428, 465, 466
BmrI	ACTGGG	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	465, 466
BsaJI	CCNNGG	3 cut(s)	276, 464, 473
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 465, 524, 525
Bse1I	ACTGG	2 cut(s)	529, 532
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	320, 356, 428
BseDI	CCNNGG	3 cut(s)	276, 464, 473
BseGI	GGATG	4 cut(s)	286, 313, 491, 496
BseLI	CCNNNNNNNGG	4 cut(s)	84, 465, 524, 525
BseMII	CTCAG	4 cut(s)	86, 97, 360, 438
BseNI	ACTGG	2 cut(s)	529, 532
BseXI	GCAGC	2 cut(s)	420, 427
BshFI	GGCC	2 cut(s)	88, 354
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	389, 465
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	4 cut(s)	84, 465, 524, 525
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	88, 354
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	24, 262, 331
Bsp19I	CCATGG	2 cut(s)	276, 473
BspACI	CCGC	2 cut(s)	181, 513
BspANI	GGCC	2 cut(s)	88, 354
BspCNI	CTCAG	4 cut(s)	85, 96, 361, 439
BspLI	GGNNCC	3 cut(s)	470, 517, 530
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	529, 532
BssECI	CCNNGG	3 cut(s)	276, 464, 473
BssMI	GATC	3 cut(s)	24, 262, 331
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	276, 473
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	3 cut(s)	320, 356, 428
Bst6I	CTCTTC	2 cut(s)	10, 162
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	5 cut(s)	72, 83, 106, 369, 447
BstDSI	CCRYGG	2 cut(s)	276, 473
BstF5I	GGATG	4 cut(s)	286, 313, 491, 496
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 408
BstKTI	GATC	3 cut(s)	27, 265, 334
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	24, 262, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	3 cut(s)	320, 356, 428
BstSCI	CCNGG	5 cut(s)	318, 354, 426, 463, 464
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	420, 427
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	88, 354
BtgI	CCRYGG	2 cut(s)	276, 473
BtsCI	GGATG	4 cut(s)	286, 313, 491, 496
BtsI	GCAGTG	2 cut(s)	396, 408
BtsIMutI	CAGTG	2 cut(s)	396, 408
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	117, 408
Cfr13I	GGNCC	1 cut(s)	515
Cfr9I	CCCGGG	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	2 cut(s)	277, 474
CviJI	RGCY	8 cut(s)	9, 32, 41, 88, 105, 354, 435, 458
CviKI_1	RGCY	8 cut(s)	9, 32, 41, 88, 105, 354, 435, 458
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	5 cut(s)	72, 83, 106, 369, 447
DpnI	GATC	3 cut(s)	26, 264, 333
DpnII	GATC	3 cut(s)	24, 262, 331
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	10, 162
EarI	CTCTTC	2 cut(s)	10, 162
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	276, 473
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	515
Eco47III	AGCGCT	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	41
Eco81I	CCTNAGG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	41
EcoRII	CCWGG	3 cut(s)	318, 354, 426
EcoT14I	CCWWGG	2 cut(s)	276, 473
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	276, 473
FaeI	CATG	2 cut(s)	280, 477
FaiI	YATR	9 cut(s)	150, 187, 267, 278, 337, 438, 475, 497, 521
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	2 cut(s)	276, 473
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	409, 441
FokI	GGATG	4 cut(s)	293, 320, 498, 503
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	409, 441
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	2 cut(s)	116, 407
GluI	GCNGC	2 cut(s)	409, 441
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	88, 354
HapII	CCGG	2 cut(s)	389, 465
HhaI	GCGC	2 cut(s)	117, 408
Hin1II	CATG	2 cut(s)	280, 477
Hin6I	GCGC	2 cut(s)	115, 406
HinP1I	GCGC	2 cut(s)	115, 406
HindIII	AAGCTT	1 cut(s)	7
HpaII	CCGG	2 cut(s)	389, 465
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	3 cut(s)	314, 329, 446
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	5 cut(s)	72, 83, 106, 369, 447
Hsp92II	CATG	2 cut(s)	280, 477
HspAI	GCGC	2 cut(s)	115, 406
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 262, 331
LmnI	GCTCC	3 cut(s)	207, 358, 448
Lsp1109I	GCAGC	2 cut(s)	420, 427
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	26, 264, 333
MboI	GATC	3 cut(s)	24, 262, 331
MboII	GAAGA	2 cut(s)	27, 179
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	2 cut(s)	230, 291
MluNI	TGGCCA	1 cut(s)	354
MnlI	CCTC	7 cut(s)	11, 99, 167, 212, 253, 364, 476
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	294, 347
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	2 cut(s)	389, 465
MspR9I	CCNGG	5 cut(s)	320, 356, 428, 465, 466
MvaI	CCWGG	3 cut(s)	320, 356, 428
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	2 cut(s)	465, 466
NcoI	CCATGG	2 cut(s)	276, 473
NdeII	GATC	3 cut(s)	24, 262, 331
NlaIII	CATG	2 cut(s)	280, 477
NlaIV	GGNNCC	3 cut(s)	470, 517, 530
NsbI	TGCGCA	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	410, 442
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	3 cut(s)	318, 354, 426
PspGI	CCWGG	3 cut(s)	318, 354, 426
PspN4I	GGNNCC	3 cut(s)	470, 517, 530
PspPI	GGNCC	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	294, 347
SatI	GCNGC	2 cut(s)	409, 441
Sau3AI	GATC	3 cut(s)	24, 262, 331
Sau96I	GGNCC	1 cut(s)	515
ScrFI	CCNGG	5 cut(s)	320, 356, 428, 465, 466
SduI	GDGCHC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	515
SmaI	CCCGGG	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	230, 291
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	181, 513
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	5 cut(s)	318, 354, 426, 463, 464
StyI	CCWWGG	2 cut(s)	276, 473
TaqI	TCGA	2 cut(s)	91, 153
TasI	AATT	2 cut(s)	230, 291
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	2 cut(s)	294, 347
Tru9I	TTAA	2 cut(s)	294, 347
TscAI	CASTG	2 cut(s)	403, 408
TseI	GCWGC	2 cut(s)	408, 440
TspDTI	ATGAA	3 cut(s)	180, 260, 297
TspMI	CCCGGG	1 cut(s)	464
TspRI	CASTG	2 cut(s)	403, 408
VpaK11BI	GGWCC	1 cut(s)	515
XmaI	CCCGGG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.