Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009467

Physical Location & Seq

Genomic Coordinates Forward (+)

17234481 .. 17236544

Gene Structure 2064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGAAGCTTGAGAAGAAGCTTGATCAACCTCCACCGAACCCTCAAATCCACCGCTTCCATCTCTCCCGCCGAAACCCATCTCAGGCCTCAATTCGGATACGGTTTGGTTCAGCGTTCTTATTCCACCAACAATGGCAGCAATCTGGACATCGACCTCTCTACCCAAGAGAGCAAGAGGCGCTTATTTAACAGATTGATATACAGGAGCAAGCAGAGAGGGTTTTTGGAGTTGGATTTGGTTCTGGGTAAGTGGGTGGAGGAGCATATCCATTCCATGGATGAACAGGGAATTAAATCTCTTGTGGATGTCCTCGACCTGGAAAACCCAGATCTGTGGAAGTGGTTAATTGGCCAGGAGCAACCCCCCGAGGCACTCCAAACTAATCCTGTTTTTACTGCAGTGCGTAACAAGATCACGAACAACCTGAACAGCTATGCTGCTCCCGAGACACGAGCAACACCTGACCAGCCATGGGTTAGAGGGTGGGATGATATAAAGAAAAGCCAGGGCGGCCCTATAACGGGGAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016043 GO:0016310 GO:0016999 GO:0017144 GO:0018065 GO:0018293 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0022607 GO:0022900 GO:0022904 GO:0033108 GO:0034552 GO:0034553 GO:0034622 GO:0034641 GO:0036211 GO:0042773 GO:0042775 GO:0043170 GO:0043412 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sdh5

Protein Analysis

179

Amino Acids

20.28

Weight (kDa)

8.92

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sdh5	PF03937	64 - 137	2.3e-23	Flavinator of succinate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51040 AT5G51040 AT5G51040 AT5G51040
fragaria_vesca	FvH4_5g09730 FvH4_5g09730
malus_domestica	MD06G1128800.v1.1 MD14G1145800.v1.1
prunus_persica	Prupe.5G140100_v2.0.a1 Prupe.5G140100_v2.0.a1
pyrus_communis	pycom06g12040 pycom14g12080
rosa_chinensis	RchiOBHm_Chr7g0188501
rosa_laevigata	RLG00000004689
rosa_multiflora	Rmu_sc0001576.1_g000007 Rmu_sc0016427.1_g000005
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095600 Rh7BG097400 Rh7CG098200 Rh7DG097500
rosa_wichuraiana	Rw7G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AciI	CCGC	3 cut(s)	54, 69, 513
AcoI	YGGCCR	1 cut(s)	352
AfiI	CCNNNNNNNGG	7 cut(s)	84, 95, 277, 319, 475, 523, 524
AjnI	CCWGG	3 cut(s)	318, 354, 507
AluBI	AGCT	3 cut(s)	9, 21, 435
AluI	AGCT	3 cut(s)	9, 21, 435
Alw26I	GTCTC	1 cut(s)	443
Ama87I	CYCGRG	2 cut(s)	368, 446
AoxI	GGCC	3 cut(s)	86, 352, 514
ApeKI	GCWGC	2 cut(s)	138, 440
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	515
AvaI	CYCGRG	2 cut(s)	368, 446
BalI	TGGCCA	1 cut(s)	354
BauI	CACGAG	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	150, 427
BccI	CCATC	2 cut(s)	68, 87
BciT130I	CCWGG	3 cut(s)	320, 356, 509
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	513
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	3 cut(s)	139, 441, 514
BlsI	GCNGC	3 cut(s)	140, 442, 515
Bme1390I	CCNGG	3 cut(s)	320, 356, 509
BmeT110I	CYCGRG	2 cut(s)	368, 446
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	3 cut(s)	320, 356, 509
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	4 cut(s)	276, 369, 473, 508
Bsc4I	CCNNNNNNNGG	7 cut(s)	84, 95, 277, 319, 475, 523, 524
Bse1I	ACTGG	1 cut(s)	532
BseBI	CCWGG	3 cut(s)	320, 356, 509
BseDI	CCNNGG	4 cut(s)	276, 369, 473, 508
BseGI	GGATG	3 cut(s)	286, 313, 496
BseLI	CCNNNNNNNGG	7 cut(s)	84, 95, 277, 319, 475, 523, 524
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	150, 427
BshFI	GGCC	3 cut(s)	88, 354, 516
BsiHKCI	CYCGRG	2 cut(s)	368, 446
BslI	CCNNNNNNNGG	7 cut(s)	84, 95, 277, 319, 475, 523, 524
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	88, 354, 516
BsoBI	CYCGRG	2 cut(s)	368, 446
Bsp143I	GATC	3 cut(s)	24, 331, 414
Bsp19I	CCATGG	2 cut(s)	276, 473
BspACI	CCGC	3 cut(s)	54, 69, 513
BspANI	GGCC	3 cut(s)	88, 354, 516
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	530
BspMAI	CTGCAG	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	4 cut(s)	276, 369, 473, 508
BssMI	GATC	3 cut(s)	24, 331, 414
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	276, 473
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	3 cut(s)	320, 356, 509
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	2 cut(s)	276, 473
BstF5I	GGATG	3 cut(s)	286, 313, 496
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	27, 334, 417
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	24, 331, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 513
BstNI	CCWGG	3 cut(s)	320, 356, 509
BstSCI	CCNGG	3 cut(s)	318, 354, 507
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	150, 427
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	88, 354, 516
BtgI	CCRYGG	2 cut(s)	276, 473
BtsCI	GGATG	3 cut(s)	286, 313, 496
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	515
CviAII	CATG	2 cut(s)	277, 474
CviJI	RGCY	8 cut(s)	9, 21, 88, 354, 435, 472, 507, 516
CviKI_1	RGCY	8 cut(s)	9, 21, 88, 354, 435, 472, 507, 516
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	3 cut(s)	26, 333, 416
DpnII	GATC	3 cut(s)	24, 331, 414
EaeI	YGGCCR	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	276, 473
Eco147I	AGGCCT	1 cut(s)	88
Eco88I	CYCGRG	2 cut(s)	368, 446
EcoRII	CCWGG	3 cut(s)	318, 354, 507
EcoT14I	CCWWGG	2 cut(s)	276, 473
ErhI	CCWWGG	2 cut(s)	276, 473
FaeI	CATG	2 cut(s)	280, 477
FaiI	YATR	7 cut(s)	202, 267, 278, 438, 475, 497, 521
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	2 cut(s)	276, 473
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	139, 441, 514
FokI	GGATG	3 cut(s)	293, 320, 503
Fsp4HI	GCNGC	3 cut(s)	139, 441, 514
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	3 cut(s)	139, 441, 514
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	3 cut(s)	88, 354, 516
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	280, 477
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HindIII	AAGCTT	2 cut(s)	7, 19
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	3 cut(s)	146, 418, 446
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 513
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	280, 477
HspAI	GCGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 331, 414
LmnI	GCTCC	4 cut(s)	207, 262, 358, 448
Lsp1109I	GCAGC	2 cut(s)	150, 427
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	3 cut(s)	26, 333, 416
MboI	GATC	3 cut(s)	24, 331, 414
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	3 cut(s)	92, 291, 348
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	213
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	3 cut(s)	189, 294, 347
Msp20I	TGGCCA	1 cut(s)	354
MspR9I	CCNGG	3 cut(s)	320, 356, 509
MvaI	CCWGG	3 cut(s)	320, 356, 509
MwoI	GCNNNNNNNGC	2 cut(s)	180, 513
NcoI	CCATGG	2 cut(s)	276, 473
NdeII	GATC	3 cut(s)	24, 331, 414
NlaIII	CATG	2 cut(s)	280, 477
NlaIV	GGNNCC	1 cut(s)	530
PceI	AGGCCT	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	140, 442, 515
Psp6I	CCWGG	3 cut(s)	318, 354, 507
PspGI	CCWGG	3 cut(s)	318, 354, 507
PspN4I	GGNNCC	1 cut(s)	530
PspPI	GGNCC	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	189, 294, 347
SatI	GCNGC	3 cut(s)	139, 441, 514
Sau3AI	GATC	3 cut(s)	24, 331, 414
Sau96I	GGNCC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	320, 356, 509
SetI	ASST	8 cut(s)	11, 23, 33, 159, 321, 429, 437, 466
SfcI	CTRYAG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	92, 291, 348
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	3 cut(s)	54, 69, 513
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	3 cut(s)	318, 354, 507
StyI	CCWWGG	2 cut(s)	276, 473
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	153, 315
TasI	AATT	3 cut(s)	92, 291, 348
TauI	GCSGC	1 cut(s)	516
Tru1I	TTAA	3 cut(s)	189, 294, 347
Tru9I	TTAA	3 cut(s)	189, 294, 347
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	2 cut(s)	138, 440
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.