Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009467

Physical Location & Seq

Genomic Coordinates Reverse (-)

5592991 .. 5595195

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAAGCTTGAGAAGAGCTTTGATCAGCGCTCACCGAGCTCTCAAATCCAGCAATTCCATCTCACCCACTCAGACCCTTCTCAGGCCTCAATATAGTAGTGGCTTAGTTCAGCGATCTTATTCCACCGATAACTCCAGCAATCTCAATATCGACCTCTCTAACGAGGAGAGCAAGCGGCGTTTATGTAATAGATTATTGTACAGGAGTAAACAGAGAGGGTTCTTGGAATTGGATTTGGTTCTGGGTAAGTGGGTGGAGGATCATATTCATTCCATGGATGAAAGTGGAATTAAAGCTCTTGTGGATGTTCTTGACGTGGAAAACCCTGATCTCTGGAAGTGGTTAAGTGGCCAGGAGCAACCTCCCCAGGCACTCATAACTAATCCGGTTTTCACTGCAGTGCGGAACAAGGTTACCAAAAACCTGGACAGCTATGCAGCTCCGGAGACACGAGCAACACCCGGGAACCCATGGGTCAGAGGATGGGATGATATAAAGAAATATAAGGGCGGCCCTATAACCGGGAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016043 GO:0016310 GO:0016999 GO:0017144 GO:0018065 GO:0018293 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0022607 GO:0022900 GO:0022904 GO:0033108 GO:0034552 GO:0034553 GO:0034622 GO:0034641 GO:0036211 GO:0042773 GO:0042775 GO:0043170 GO:0043412 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sdh5

Protein Analysis

179

Amino Acids

20.06

Weight (kDa)

9.41

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sdh5	PF03937	64 - 138	4.2e-22	Flavinator of succinate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51040 AT5G51040 AT5G51040 AT5G51040
fragaria_vesca	FvH4_5g09730 FvH4_5g09730
malus_domestica	MD06G1128800.v1.1 MD14G1145800.v1.1
prunus_persica	Prupe.5G140100_v2.0.a1 Prupe.5G140100_v2.0.a1
pyrus_communis	pycom06g12040 pycom14g12080
rosa_chinensis	RchiOBHm_Chr7g0188501
rosa_laevigata	RLG00000004689
rosa_multiflora	Rmu_sc0001576.1_g000007 Rmu_sc0016427.1_g000005
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095600 Rh7BG097400 Rh7CG098200 Rh7DG097500
rosa_wichuraiana	Rw7G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	3 cut(s)	178, 406, 513
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	352
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	84, 524
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	3 cut(s)	354, 369, 426
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	6 cut(s)	9, 20, 41, 299, 435, 443
AluI	AGCT	6 cut(s)	9, 20, 41, 299, 435, 443
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	445
Aor51HI	AGCGCT	1 cut(s)	31
AoxI	GGCC	3 cut(s)	86, 352, 514
ApeKI	GCWGC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	3 cut(s)	465, 466, 526
AsuHPI	GGTGA	2 cut(s)	26, 57
AvaI	CYCGRG	1 cut(s)	464
BalI	TGGCCA	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	2 cut(s)	68, 480
BciT130I	CCWGG	3 cut(s)	356, 371, 428
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	3 cut(s)	465, 466, 526
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	3 cut(s)	179, 441, 514
BlsI	GCNGC	3 cut(s)	180, 442, 515
Bme1390I	CCNGG	6 cut(s)	356, 371, 428, 465, 466, 526
BmeT110I	CYCGRG	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	470, 530
BmrFI	CCNGG	6 cut(s)	356, 371, 428, 465, 466, 526
BpmI	CTGGAG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	3 cut(s)	465, 466, 526
BsaJI	CCNNGG	4 cut(s)	276, 369, 464, 473
BsaWI	WCCGGW	2 cut(s)	388, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 524
Bse1I	ACTGG	1 cut(s)	532
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	3 cut(s)	356, 371, 428
BseDI	CCNNGG	4 cut(s)	276, 369, 464, 473
BseGI	GGATG	4 cut(s)	286, 313, 491, 496
BseLI	CCNNNNNNNGG	2 cut(s)	84, 524
BseMII	CTCAG	2 cut(s)	86, 97
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	452
BshFI	GGCC	3 cut(s)	88, 354, 516
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	4 cut(s)	389, 446, 465, 525
BslI	CCNNNNNNNGG	2 cut(s)	84, 524
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	88, 354, 516
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp13I	TCCGGA	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	24, 116, 262, 331
Bsp19I	CCATGG	2 cut(s)	276, 473
BspACI	CCGC	3 cut(s)	178, 406, 513
BspANI	GGCC	3 cut(s)	88, 354, 516
BspCNI	CTCAG	2 cut(s)	85, 96
BspEI	TCCGGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	470, 530
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	4 cut(s)	276, 369, 464, 473
BssMI	GATC	4 cut(s)	24, 116, 262, 331
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	276, 473
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	3 cut(s)	356, 371, 428
Bst6I	CTCTTC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	7, 176
BstDEI	CTNAG	3 cut(s)	72, 83, 106
BstDSI	CCRYGG	2 cut(s)	276, 473
BstEII	GGTNACC	1 cut(s)	415
BstF5I	GGATG	4 cut(s)	286, 313, 491, 496
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	27, 119, 265, 334
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	4 cut(s)	24, 116, 262, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	3 cut(s)	356, 371, 428
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	6 cut(s)	354, 369, 426, 463, 464, 524
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	452
BstXI	CCANNNNNNTGG	1 cut(s)	427
BsuRI	GGCC	3 cut(s)	88, 354, 516
BtgI	CCRYGG	2 cut(s)	276, 473
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	4 cut(s)	286, 313, 491, 496
BtsI	GCAGTG	2 cut(s)	396, 408
BtsIMutI	CAGTG	2 cut(s)	396, 408
Cac8I	GCNNGC	2 cut(s)	7, 176
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	515
Cfr9I	CCCGGG	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	2 cut(s)	277, 474
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	72, 83, 106
DpnI	GATC	4 cut(s)	26, 118, 264, 333
DpnII	GATC	4 cut(s)	24, 116, 262, 331
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	276, 473
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	43
Eco47III	AGCGCT	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	415
EcoICRI	GAGCTC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	3 cut(s)	354, 369, 426
EcoT14I	CCWWGG	2 cut(s)	276, 473
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	276, 473
FaeI	CATG	2 cut(s)	280, 477
FatI	CATG	2 cut(s)	276, 473
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	179, 441, 514
FokI	GGATG	4 cut(s)	293, 320, 498, 503
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	179, 441, 514
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	3 cut(s)	179, 441, 514
GsuI	CTGGAG	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	88, 354, 516
HapII	CCGG	4 cut(s)	389, 446, 465, 525
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	280, 477
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	7
HpaII	CCGG	4 cut(s)	389, 446, 465, 525
HphI	GGTGA	2 cut(s)	26, 57
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	75, 482
Hpy188III	TCNNGA	3 cut(s)	314, 337, 446
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	401, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	72, 83, 106
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	280, 477
HspAI	GCGC	1 cut(s)	30
Kpn2I	TCCGGA	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	24, 116, 262, 331
LguI	GCTCTTC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	358, 448
Lsp1109I	GCAGC	1 cut(s)	452
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	4 cut(s)	26, 118, 264, 333
MboI	GATC	4 cut(s)	24, 116, 262, 331
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	3 cut(s)	55, 230, 291
MluNI	TGGCCA	1 cut(s)	354
MnlI	CCTC	7 cut(s)	99, 160, 167, 212, 253, 375, 476
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	294, 347
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	4 cut(s)	389, 446, 465, 525
MspR9I	CCNGG	6 cut(s)	356, 371, 428, 465, 466, 526
MvaI	CCWGG	3 cut(s)	356, 371, 428
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	3 cut(s)	465, 466, 526
NcoI	CCATGG	2 cut(s)	276, 473
NdeII	GATC	4 cut(s)	24, 116, 262, 331
NlaIII	CATG	2 cut(s)	280, 477
NlaIV	GGNNCC	2 cut(s)	470, 530
OliI	CACNNNNGTG	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	180, 442, 515
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	3 cut(s)	354, 369, 426
PspEI	GGTNACC	1 cut(s)	415
PspGI	CCWGG	3 cut(s)	354, 369, 426
PspN4I	GGNNCC	2 cut(s)	470, 530
PspPI	GGNCC	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	294, 347
SatI	GCNGC	3 cut(s)	179, 441, 514
Sau3AI	GATC	4 cut(s)	24, 116, 262, 331
Sau96I	GGNCC	1 cut(s)	515
ScrFI	CCNGG	6 cut(s)	356, 371, 428, 465, 466, 526
SduI	GDGCHC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	399
SmaI	CCCGGG	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	55, 230, 291
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	3 cut(s)	178, 406, 513
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	6 cut(s)	354, 369, 426, 463, 464, 524
StyI	CCWWGG	2 cut(s)	276, 473
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	55, 230, 291
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	181, 516
Tru1I	TTAA	2 cut(s)	294, 347
Tru9I	TTAA	2 cut(s)	294, 347
TscAI	CASTG	2 cut(s)	403, 408
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	260, 297
TspMI	CCCGGG	1 cut(s)	464
TspRI	CASTG	2 cut(s)	403, 408
XmaI	CCCGGG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.