Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009467

Physical Location & Seq

Genomic Coordinates Reverse (-)

61450413 .. 61452166

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAAGCTTGAGAAGAGGTTTGATCACAGCCCACCGAGCTCTCAAATCCAGCAACTCCATCTCACCCACTCAGACCCTTCTCAGGCCTCAATATAGTATTGGCTTAGTTCAGCGCTCTTATTCTACTGATAACACCAGCAATCTACATATCGACCTCTCTAATGAAGAGAGCAAACGGCGGTTATGTAATAGGTTATTGTACAGGAGCAAACAGAGAGGGTTCTTGGAATTGGATTTGGTTCTGGGTAAATGGGTGGAAGATCATATTCATTCCATGGATGAAAATGGAATTAAATCTCTTGTGGATGTTCTTGACCTGGAAAATCCTGATCTATGGAAGTGGTTAAGTGGCCAGGAGCAACCACCTGAGGCACTCACAACTAATCCGGTTTTCACTGCAGTGCGCAGCAAGGTCACAAACAACCTGGACAACTTTGCTGCTCCTGAGACACGAGCAACACCTGGGAACCAATGGGTTAGAGGATGGGATGATATAAAGAAATATCAGGGCGGGCCCATAACTGGGAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016043 GO:0016310 GO:0016999 GO:0017144 GO:0018065 GO:0018293 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0022607 GO:0022900 GO:0022904 GO:0033108 GO:0034552 GO:0034553 GO:0034622 GO:0034641 GO:0036211 GO:0042773 GO:0042775 GO:0043170 GO:0043412 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sdh5

Protein Analysis

179

Amino Acids

20.17

Weight (kDa)

8.73

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sdh5	PF03937	64 - 137	9.2e-23	Flavinator of succinate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51040 AT5G51040 AT5G51040 AT5G51040
fragaria_vesca	FvH4_5g09730 FvH4_5g09730
malus_domestica	MD06G1128800.v1.1 MD14G1145800.v1.1
prunus_persica	Prupe.5G140100_v2.0.a1 Prupe.5G140100_v2.0.a1
pyrus_communis	pycom06g12040 pycom14g12080
rosa_chinensis	RchiOBHm_Chr7g0188501
rosa_laevigata	RLG00000004689
rosa_multiflora	Rmu_sc0001576.1_g000007 Rmu_sc0016427.1_g000005
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095600 Rh7BG097400 Rh7CG098200 Rh7DG097500
rosa_wichuraiana	Rw7G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	407
AciI	CCGC	2 cut(s)	181, 513
AcoI	YGGCCR	1 cut(s)	352
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	116
AfiI	CCNNNNNNNGG	3 cut(s)	84, 524, 525
AjnI	CCWGG	4 cut(s)	318, 354, 426, 463
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	2 cut(s)	9, 41
AluI	AGCT	2 cut(s)	9, 41
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	3 cut(s)	86, 352, 515
ApaI	GGGCCC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	408, 440
AspLEI	GCGC	2 cut(s)	117, 408
AspS9I	GGNCC	2 cut(s)	515, 516
AsuHPI	GGTGA	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	369
BaeGI	GKGCMC	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	354
BanII	GRGCYC	2 cut(s)	43, 519
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	420, 427
BccI	CCATC	2 cut(s)	68, 480
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	4 cut(s)	320, 356, 428, 465
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	2 cut(s)	409, 441
BlsI	GCNGC	2 cut(s)	410, 442
Bme1390I	CCNGG	4 cut(s)	320, 356, 428, 465
BmgT120I	GGNCC	2 cut(s)	515, 516
BmiI	GGNNCC	3 cut(s)	470, 517, 530
BmrFI	CCNGG	4 cut(s)	320, 356, 428, 465
BmrI	ACTGGG	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	276, 464
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 524, 525
Bse1I	ACTGG	2 cut(s)	529, 532
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	4 cut(s)	320, 356, 428, 465
BseDI	CCNNGG	2 cut(s)	276, 464
BseGI	GGATG	4 cut(s)	286, 313, 491, 496
BseLI	CCNNNNNNNGG	3 cut(s)	84, 524, 525
BseMII	CTCAG	4 cut(s)	86, 97, 360, 438
BseNI	ACTGG	2 cut(s)	529, 532
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	420, 427
BshFI	GGCC	3 cut(s)	88, 354, 517
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	84, 524, 525
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	3 cut(s)	88, 354, 517
Bsp120I	GGGCCC	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	43, 519
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	24, 262, 331
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	2 cut(s)	181, 513
BspANI	GGCC	3 cut(s)	88, 354, 517
BspCNI	CTCAG	4 cut(s)	85, 96, 361, 439
BspLI	GGNNCC	3 cut(s)	470, 517, 530
BspMAI	CTGCAG	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	529, 532
BssECI	CCNNGG	2 cut(s)	276, 464
BssMI	GATC	3 cut(s)	24, 262, 331
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	4 cut(s)	320, 356, 428, 465
Bst6I	CTCTTC	2 cut(s)	10, 162
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	7, 515
BstDEI	CTNAG	5 cut(s)	72, 83, 106, 369, 447
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	4 cut(s)	286, 313, 491, 496
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 408
BstKTI	GATC	3 cut(s)	27, 265, 334
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	24, 262, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	4 cut(s)	320, 356, 428, 465
BstSCI	CCNGG	4 cut(s)	318, 354, 426, 463
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	420, 427
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	3 cut(s)	88, 354, 517
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	4 cut(s)	286, 313, 491, 496
BtsI	GCAGTG	2 cut(s)	396, 408
BtsIMutI	CAGTG	2 cut(s)	396, 408
Cac8I	GCNNGC	2 cut(s)	7, 515
CfoI	GCGC	2 cut(s)	117, 408
Cfr13I	GGNCC	2 cut(s)	515, 516
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	7 cut(s)	9, 32, 41, 88, 105, 354, 517
CviKI_1	RGCY	7 cut(s)	9, 32, 41, 88, 105, 354, 517
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	5 cut(s)	72, 83, 106, 369, 447
DpnI	GATC	3 cut(s)	26, 264, 333
DpnII	GATC	3 cut(s)	24, 262, 331
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	10, 162
EarI	CTCTTC	2 cut(s)	10, 162
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	43, 519
Eco47III	AGCGCT	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	41
Eco81I	CCTNAGG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	41
EcoRII	CCWGG	4 cut(s)	318, 354, 426, 463
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	43, 519
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	1 cut(s)	280
FaiI	YATR	8 cut(s)	96, 150, 187, 267, 278, 337, 497, 521
FatI	CATG	1 cut(s)	276
FauI	CCCGC	1 cut(s)	506
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	409, 441
FokI	GGATG	4 cut(s)	293, 320, 498, 503
FriOI	GRGCYC	2 cut(s)	43, 519
Fsp4HI	GCNGC	2 cut(s)	409, 441
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	2 cut(s)	116, 407
GluI	GCNGC	2 cut(s)	409, 441
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	3 cut(s)	88, 354, 517
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	2 cut(s)	117, 408
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	115, 406
HinP1I	GCGC	2 cut(s)	115, 406
HindIII	AAGCTT	1 cut(s)	7
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	3 cut(s)	314, 329, 446
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	5 cut(s)	72, 83, 106, 369, 447
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	115, 406
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 262, 331
LmnI	GCTCC	3 cut(s)	207, 358, 448
Lsp1109I	GCAGC	2 cut(s)	420, 427
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	26, 264, 333
MboI	GATC	3 cut(s)	24, 262, 331
MboII	GAAGA	3 cut(s)	27, 179, 272
MhlI	GDGCHC	2 cut(s)	43, 519
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	2 cut(s)	230, 291
MluNI	TGGCCA	1 cut(s)	354
MnlI	CCTC	6 cut(s)	11, 99, 167, 212, 364, 476
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	294, 347
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	4 cut(s)	320, 356, 428, 465
MvaI	CCWGG	4 cut(s)	320, 356, 428, 465
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	24, 262, 331
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	3 cut(s)	470, 517, 530
NmuCI	GTSAC	1 cut(s)	415
NsbI	TGCGCA	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	410, 442
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	4 cut(s)	318, 354, 426, 463
PspGI	CCWGG	4 cut(s)	318, 354, 426, 463
PspN4I	GGNNCC	3 cut(s)	470, 517, 530
PspOMI	GGGCCC	1 cut(s)	515
PspPI	GGNCC	2 cut(s)	515, 516
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	294, 347
SatI	GCNGC	2 cut(s)	409, 441
Sau3AI	GATC	3 cut(s)	24, 262, 331
Sau96I	GGNCC	2 cut(s)	515, 516
ScrFI	CCNGG	4 cut(s)	320, 356, 428, 465
SduI	GDGCHC	2 cut(s)	43, 519
SfcI	CTRYAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	230, 291
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	181, 513
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	4 cut(s)	318, 354, 426, 463
StyI	CCWWGG	1 cut(s)	276
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	230, 291
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	2 cut(s)	294, 347
Tru9I	TTAA	2 cut(s)	294, 347
TscAI	CASTG	2 cut(s)	403, 408
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	408, 440
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	180, 260, 297
TspRI	CASTG	2 cut(s)	403, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.