Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009467

Physical Location & Seq

Genomic Coordinates Forward (+)

27263575 .. 27266277

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1128800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGAAGCTTGAGAAGAAGCTTGATCAGCCTCCACCGAGCCCTGAAATCCACCGCTTCCATCTCTCCCGCCGAAACCCATGTCAGGTCTCAATTCGGATACGGTTTGGTTCAGCGTTCTTATTCCACCAACAATGGCAGCAATCCGGACATCGACCTCTCCACCCAAGAGAGCAAGAGGCGCCTATTTAACAGATTGATATACAGGAGCAAGCAGAGAGGGTTTTTGGAGTTGGATTTGGTTCTGGGTAAGTGGGTGGAGGAGCATATCCATTCATTGGATGAACAGGGAATTAAATCTCTTGTGGATGTCCTCAACCTGGAAAACCCAGATCTGTGGAAGTGGTTAATTGGCCAGGAGCAACCCCCCGAGGCACTCCAAACTAATCCTGTTTTTACTGCAGTGCGTAACAAGATCACGAACAACCTGAACAGCTATGCTGCTTCTGAGACACGAGCAACACCTGGCCAGCCATGGGTTAGAGGGTGGGATGATATAAAGAAAAGCCAGGGCTGCCCTATAACGGGTAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016043 GO:0016310 GO:0016999 GO:0017144 GO:0018065 GO:0018293 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0022607 GO:0022900 GO:0022904 GO:0033108 GO:0034552 GO:0034553 GO:0034622 GO:0034641 GO:0036211 GO:0042773 GO:0042775 GO:0043170 GO:0043412 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sdh5

Protein Analysis

179

Amino Acids

20.14

Weight (kDa)

9.33

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sdh5	PF03937	64 - 137	4.5e-23	Flavinator of succinate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51040 AT5G51040 AT5G51040 AT5G51040
fragaria_vesca	FvH4_5g09730 FvH4_5g09730
malus_domestica	MD06G1128800.v1.1 MD14G1145800.v1.1
prunus_persica	Prupe.5G140100_v2.0.a1 Prupe.5G140100_v2.0.a1
pyrus_communis	pycom06g12040 pycom14g12080
rosa_chinensis	RchiOBHm_Chr7g0188501
rosa_laevigata	RLG00000004689
rosa_multiflora	Rmu_sc0001576.1_g000007 Rmu_sc0016427.1_g000005
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095600 Rh7BG097400 Rh7CG098200 Rh7DG097500
rosa_wichuraiana	Rw7G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	2 cut(s)	54, 69
AcoI	YGGCCR	2 cut(s)	352, 466
AcyI	GRCGYC	1 cut(s)	181
AfiI	CCNNNNNNNGG	6 cut(s)	84, 277, 319, 475, 523, 524
AjnI	CCWGG	4 cut(s)	318, 354, 463, 507
AluBI	AGCT	3 cut(s)	9, 21, 435
AluI	AGCT	3 cut(s)	9, 21, 435
Alw26I	GTCTC	2 cut(s)	93, 443
Ama87I	CYCGRG	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	2 cut(s)	352, 466
ApeKI	GCWGC	3 cut(s)	138, 440, 513
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspLEI	GCGC	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	368
BalI	TGGCCA	2 cut(s)	354, 468
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	150, 427, 500
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	4 cut(s)	320, 356, 465, 509
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	93, 443
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	3 cut(s)	139, 441, 514
BlsI	GCNGC	3 cut(s)	140, 442, 515
Bme1390I	CCNGG	4 cut(s)	320, 356, 465, 509
BmeT110I	CYCGRG	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	4 cut(s)	320, 356, 465, 509
BpuEI	CTTGAG	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	369, 473, 508
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	6 cut(s)	84, 277, 319, 475, 523, 524
BseAI	TCCGGA	1 cut(s)	145
BseBI	CCWGG	4 cut(s)	320, 356, 465, 509
BseDI	CCNNGG	3 cut(s)	369, 473, 508
BseGI	GGATG	3 cut(s)	286, 313, 496
BseLI	CCNNNNNNNGG	6 cut(s)	84, 277, 319, 475, 523, 524
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	150, 427, 500
BshFI	GGCC	2 cut(s)	354, 468
BshNI	GGYRCC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	6 cut(s)	84, 277, 319, 475, 523, 524
BsmAI	GTCTC	2 cut(s)	93, 443
BsnI	GGCC	2 cut(s)	354, 468
Bso31I	GGTCTC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	24, 331, 414
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	2 cut(s)	54, 69
BspANI	GGCC	2 cut(s)	354, 468
BspCNI	CTCAG	1 cut(s)	439
BspEI	TCCGGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	369, 473, 508
BssMI	GATC	3 cut(s)	24, 331, 414
BssNI	GRCGYC	1 cut(s)	181
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	473
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	4 cut(s)	320, 356, 465, 509
Bst4CI	ACNGT	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	212, 470
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	3 cut(s)	286, 313, 496
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	3 cut(s)	27, 334, 417
BstMAI	GTCTC	2 cut(s)	93, 443
BstMBI	GATC	3 cut(s)	24, 331, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 180, 513
BstNI	CCWGG	4 cut(s)	320, 356, 465, 509
BstSCI	CCNGG	4 cut(s)	318, 354, 463, 507
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	150, 427, 500
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	354, 468
BtgI	CCRYGG	1 cut(s)	473
BtsCI	GGATG	3 cut(s)	286, 313, 496
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	212, 470
CfoI	GCGC	1 cut(s)	183
CviAII	CATG	2 cut(s)	80, 474
DdeI	CTNAG	1 cut(s)	447
DinI	GGCGCC	1 cut(s)	182
DpnI	GATC	3 cut(s)	26, 333, 416
DpnII	GATC	3 cut(s)	24, 331, 414
EaeI	YGGCCR	2 cut(s)	352, 466
Eco130I	CCWWGG	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	368
EcoRII	CCWGG	4 cut(s)	318, 354, 463, 507
EcoT14I	CCWWGG	1 cut(s)	473
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	182
EheI	GGCGCC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	83, 477
FaiI	YATR	7 cut(s)	81, 202, 267, 438, 475, 497, 521
FatI	CATG	2 cut(s)	79, 473
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	139, 441, 514
FokI	GGATG	3 cut(s)	293, 320, 503
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	139, 441, 514
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	3 cut(s)	139, 441, 514
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	354, 468
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	83, 477
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HindIII	AAGCTT	2 cut(s)	7, 19
HpaII	CCGG	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	98, 448
Hpy188III	TCNNGA	2 cut(s)	146, 418
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 180, 513
HpyF3I	CTNAG	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	83, 477
HspAI	GCGC	1 cut(s)	181
KasI	GGCGCC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 331, 414
LmnI	GCTCC	3 cut(s)	207, 262, 358
Lsp1109I	GCAGC	3 cut(s)	150, 427, 500
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	3 cut(s)	26, 333, 416
MboI	GATC	3 cut(s)	24, 331, 414
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	2 cut(s)	354, 468
MluCI	AATT	3 cut(s)	92, 291, 348
MluNI	TGGCCA	2 cut(s)	354, 468
Mly113I	GGCGCC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	8 cut(s)	41, 167, 171, 212, 253, 323, 364, 476
Mox20I	TGGCCA	2 cut(s)	354, 468
MroI	TCCGGA	1 cut(s)	145
MscI	TGGCCA	2 cut(s)	354, 468
MseI	TTAA	3 cut(s)	189, 294, 347
Msp20I	TGGCCA	2 cut(s)	354, 468
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	4 cut(s)	320, 356, 465, 509
MvaI	CCWGG	4 cut(s)	320, 356, 465, 509
MwoI	GCNNNNNNNGC	3 cut(s)	27, 180, 513
NarI	GGCGCC	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	3 cut(s)	24, 331, 414
NlaIII	CATG	2 cut(s)	83, 477
NlaIV	GGNNCC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	140, 442, 515
PluTI	GGCGCC	1 cut(s)	184
Psp6I	CCWGG	4 cut(s)	318, 354, 463, 507
PspGI	CCWGG	4 cut(s)	318, 354, 463, 507
PspN4I	GGNNCC	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	189, 294, 347
SatI	GCNGC	3 cut(s)	139, 441, 514
Sau3AI	GATC	3 cut(s)	24, 331, 414
ScrFI	CCNGG	4 cut(s)	320, 356, 465, 509
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	8 cut(s)	11, 23, 89, 159, 321, 429, 437, 466
SfcI	CTRYAG	1 cut(s)	399
SfoI	GGCGCC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	92, 291, 348
SsiI	CCGC	2 cut(s)	54, 69
SspDI	GGCGCC	1 cut(s)	180
StyD4I	CCNGG	4 cut(s)	318, 354, 463, 507
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	92, 291, 348
Tru1I	TTAA	3 cut(s)	189, 294, 347
Tru9I	TTAA	3 cut(s)	189, 294, 347
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	3 cut(s)	138, 440, 513
TspDTI	ATGAA	2 cut(s)	264, 297
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.