Rorug06G0491000

Flavinator of succinate dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
60906289 .. 60910888
4600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0491000.1

Sequence Viewer

Length: 1182 bp
ATGGAGGAATACAATAATAGTAATGAAATGGATCATGAGAATCAAGGCACTCCTAGAGGAAATTTCCTCTACGCTTCTTCAAATCTTGGAGGCAACTATGGTAGAGCTGCTGCTGCTGCAGGTGATCATAATCAGCAGATCAACACCTTTCATCTTCAATCAAGCGGTGGCGAGTGTTTTTCGTCAACACAACCAACCGTGAAGACCGAAGCAGCCGGTAGTACTTCCCAGCATGCTCATCACCACCACCACAAATTTCATCATCCTCAGTTTTCTCCTCCTTCATTAATATTGTCAAGAGGGCACAATGATCAGATACCGGTTCAGCAGCAGCAGCACATAGAAAACGAGAATGAAGTAGAGGCCATCAAAGCTAAGATCATTGCTCACCCTCACTACTCTAACCTCTTGCAAGCTTACATGGATTGCCAAAGGGTGGGAGCTCCTTCTGAAGTTGTGGCTCGTCTCTCAGCTGCGCGCCAAGAGTTTGAAGCACGACAGCGATCTTCAGTCAGTTCGAGAGATGCTTCTTCAAAAGACCCCGAACTCGATCAGTTCATGGAAGCTTACTATGATATGCTGGTTAAGTATCGGGAGGAACTAACAAGGCCCATACAAGAAGCAATGGATTTCATGAGGAAGATTGAAACTCAGCTTAACATGCTTGGCAATAATAGCAACACTACTCCTCTGCGCATCTTCTCGGCCTCTGCACTAGAGGACAAGTGTGACGGAAATGGTTCATCTGAAGAGGACCAAGACAACAACAGCGGTGGAGAAACAGAAGTAGCCGAGATTGATCCGAGAGCTGAAGACAGAGAGCTTAAGAACCACCTGTTAAGAAAGTACAGTGGTTACTTGAGTAGCCTCAAGCAAGAGCTTTCCAAGAAAAAGAAGAAAGGAAAATTACCCAAAGACGCCCGGCAGAAGCTTCTCAGTTGGTGGGAGTTGCATTACAAGTGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCAGAGTCAACAGGTTTGGATCAGAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCGGAGGACATGCAGTTCATGGTGATGGATGGGTTGCATCCACAGAATGCAGCAGCCCTCTATATGGATGGCCACTACATTGGTGATGGTCACTACCGTCTCGGTCCCTAA

Protein Analysis

393

Amino Acids

44.71

Weight (kDa)

6.09

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 122 - 164 6.8e-23 KNOX1 domain
KNOX2 PF03791 178 - 222 1.7e-24 KNOX2 domain
ELK PF03789 274 - 295 4e-10 ELK domain
Homeobox_KN PF05920 314 - 353 6.3e-19 Homeobox KN domain
Homeodomain PF00046 321 - 354 1.3e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
Acc16I TGCGCA 1 cut(s) 695
Acc36I ACCTGC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 436
AccII CGCG 1 cut(s) 478
AciI CCGC 2 cut(s) 165, 771
AclWI GGATC 3 cut(s) 39, 794, 1023
AcoI YGGCCR 2 cut(s) 962, 1141
AcsI RAATTY 2 cut(s) 61, 254
AcuI CTGAAG 4 cut(s) 471, 492, 768, 831
AcyI GRCGYC 1 cut(s) 918
AfaI GTAC 2 cut(s) 223, 848
AfiI CCNNNNNNNGG 2 cut(s) 436, 1135
AflII CTTAAG 1 cut(s) 824
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 5 cut(s) 81, 158, 491, 534, 647
AjuI GAANNNNNNNTTGG 2 cut(s) 977, 1009
AloI GAACNNNNNNTCC 2 cut(s) 1070, 1102
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 470, 1175
AlwI GGATC 3 cut(s) 39, 794, 1023
AoxI GGCC 5 cut(s) 363, 608, 705, 962, 1141
ApoI RAATTY 2 cut(s) 61, 254
AseI ATTAAT 1 cut(s) 287
AsiGI ACCGGT 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 739
AspLEI GCGC 3 cut(s) 478, 480, 696
AspS9I GGNCC 3 cut(s) 609, 754, 1175
AsuC2I CCSGG 1 cut(s) 922
AsuHPI GGTGA 5 cut(s) 134, 233, 380, 1105, 1166
AvaII GGWCC 2 cut(s) 754, 1175
BaeGI GKGCMC 1 cut(s) 306
BalI TGGCCA 2 cut(s) 964, 1143
BanII GRGCYC 1 cut(s) 445
BbsI GAAGAC 2 cut(s) 209, 819
Bbv12I GWGCWC 1 cut(s) 445
BccI CCATC 6 cut(s) 374, 1078, 1090, 1094, 1133, 1151
BclI TGATCA 2 cut(s) 124, 310
BcnI CCSGG 1 cut(s) 922
BcoDI GTCTC 2 cut(s) 470, 1175
BfaI CTAG 2 cut(s) 54, 716
BfmI CTRYAG 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 110
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 922
Bme18I GGWCC 2 cut(s) 754, 1175
BmgT120I GGNCC 3 cut(s) 609, 754, 1175
BmiI GGNNCC 1 cut(s) 1177
BmrFI CCNGG 1 cut(s) 922
BmsI GCATC 3 cut(s) 514, 705, 1117
BpiI GAAGAC 2 cut(s) 209, 819
BpuEI CTTGAG 2 cut(s) 854, 880
BpuMI CCSGG 1 cut(s) 922
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 918
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 1135
Bse118I RCCGGY 2 cut(s) 215, 319
Bse1I ACTGG 2 cut(s) 1040, 1067
Bse3DI GCAATG 2 cut(s) 381, 630
Bse8I GATNNNNATC 1 cut(s) 129
BseGI GGATG 4 cut(s) 262, 1105, 1108, 1144
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 436, 1135
BseMI GCAATG 2 cut(s) 381, 630
BseMII CTCAG 4 cut(s) 281, 483, 665, 949
BseNI ACTGG 2 cut(s) 1040, 1067
BsePI GCGCGC 1 cut(s) 476
BseRI GAGGAG 2 cut(s) 267, 678
BseSI GKGCMC 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 478
BshFI GGCC 5 cut(s) 365, 610, 707, 964, 1143
BshTI ACCGGT 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 3 cut(s) 216, 320, 922
BslFI GGGAC 1 cut(s) 1161
BslI CCNNNNNNNGG 2 cut(s) 436, 1135
BsmAI GTCTC 2 cut(s) 470, 1175
BsmBI CGTCTC 2 cut(s) 470, 1175
BsmFI GGGAC 1 cut(s) 1161
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 5 cut(s) 365, 610, 707, 964, 1143
Bsp1286I GDGCHC 2 cut(s) 306, 445
Bsp143I GATC 9 cut(s) 31, 124, 138, 310, 378, 503, 550, 799, 1015
BspACI CCGC 2 cut(s) 165, 771
BspANI GGCC 5 cut(s) 365, 610, 707, 964, 1143
BspCNI CTCAG 4 cut(s) 280, 482, 664, 948
BspFNI CGCG 1 cut(s) 478
BspHI TCATGA 2 cut(s) 34, 633
BspLI GGNNCC 1 cut(s) 1177
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 3 cut(s) 39, 794, 1023
BspTI CTTAAG 1 cut(s) 824
BsrDI GCAATG 2 cut(s) 381, 630
BsrFI RCCGGY 2 cut(s) 215, 319
BsrI ACTGG 2 cut(s) 1040, 1067
BssAI RCCGGY 2 cut(s) 215, 319
BssHII GCGCGC 1 cut(s) 476
BssMI GATC 9 cut(s) 31, 124, 138, 310, 378, 503, 550, 799, 1015
BssNI GRCGYC 1 cut(s) 918
Bst4CI ACNGT 3 cut(s) 199, 851, 1169
Bst6I CTCTTC 2 cut(s) 744, 1049
BstACI GRCGYC 1 cut(s) 918
BstAFI CTTAAG 1 cut(s) 824
BstC8I GCNNGC 3 cut(s) 234, 414, 478
BstDEI CTNAG 5 cut(s) 267, 375, 469, 651, 935
BstF5I GGATG 4 cut(s) 262, 1105, 1108, 1144
BstFNI CGCG 1 cut(s) 478
BstHHI GCGC 3 cut(s) 478, 480, 696
BstKTI GATC 9 cut(s) 34, 127, 141, 313, 381, 506, 553, 802, 1018
BstMAI GTCTC 2 cut(s) 470, 1175
BstMBI GATC 9 cut(s) 31, 124, 138, 310, 378, 503, 550, 799, 1015
BstMWI GCNNNNNNNGC 6 cut(s) 113, 116, 334, 371, 661, 675
BstNSI RCATGY 3 cut(s) 236, 664, 1084
BstSCI CCNGG 1 cut(s) 920
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 478
BstV2I GAAGAC 2 cut(s) 209, 819
BstXI CCANNNNNNTGG 1 cut(s) 1151
BsuRI GGCC 5 cut(s) 365, 610, 707, 964, 1143
BtsCI GGATG 4 cut(s) 262, 1105, 1108, 1144
BtsIMutI CAGTG 2 cut(s) 856, 1060
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 234, 414, 478
CciI TCATGA 2 cut(s) 34, 633
CfoI GCGC 3 cut(s) 478, 480, 696
Cfr10I RCCGGY 2 cut(s) 215, 319
Cfr13I GGNCC 3 cut(s) 609, 754, 1175
CseI GACGC 1 cut(s) 926
Csp6I GTAC 2 cut(s) 222, 847
CspAI ACCGGT 1 cut(s) 319
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 8 cut(s) 35, 233, 421, 559, 634, 661, 1081, 1090
CviQI GTAC 2 cut(s) 222, 847
DdeI CTNAG 5 cut(s) 267, 375, 469, 651, 935
DpnI GATC 9 cut(s) 33, 126, 140, 312, 380, 505, 552, 801, 1017
DpnII GATC 9 cut(s) 31, 124, 138, 310, 378, 503, 550, 799, 1015
EaeI YGGCCR 2 cut(s) 962, 1141
Eam1104I CTCTTC 2 cut(s) 744, 1049
EarI CTCTTC 2 cut(s) 744, 1049
Ecl136II GAGCTC 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 754, 1175
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 4 cut(s) 471, 492, 768, 831
EcoICRI GAGCTC 1 cut(s) 443
EcoT38I GRGCYC 1 cut(s) 445
Esp3I CGTCTC 2 cut(s) 470, 1175
FaeI CATG 8 cut(s) 38, 236, 424, 562, 637, 664, 1084, 1093
FaqI GGGAC 1 cut(s) 1161
FatI CATG 8 cut(s) 34, 232, 420, 558, 633, 660, 1080, 1089
FbaI TGATCA 2 cut(s) 124, 310
FokI GGATG 4 cut(s) 249, 1095, 1112, 1151
FriOI GRGCYC 1 cut(s) 445
FspBI CTAG 2 cut(s) 54, 716
FspI TGCGCA 1 cut(s) 695
GlaI GCGC 3 cut(s) 477, 479, 695
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 5 cut(s) 365, 610, 707, 964, 1143
HapII CCGG 3 cut(s) 216, 320, 922
HgaI GACGC 1 cut(s) 926
HhaI GCGC 3 cut(s) 478, 480, 696
Hin1I GRCGYC 1 cut(s) 918
Hin1II CATG 8 cut(s) 38, 236, 424, 562, 637, 664, 1084, 1093
Hin6I GCGC 3 cut(s) 476, 478, 694
HinP1I GCGC 3 cut(s) 476, 478, 694
HincII GTYRAC 2 cut(s) 186, 1005
HindII GTYRAC 2 cut(s) 186, 1005
HindIII AAGCTT 3 cut(s) 414, 564, 929
HinfI GANTC 3 cut(s) 40, 977, 1001
HpaII CCGG 3 cut(s) 216, 320, 922
HphI GGTGA 5 cut(s) 134, 233, 380, 1105, 1166
Hpy166II GTNNAC 2 cut(s) 186, 1005
Hpy188I TCNGA 8 cut(s) 315, 451, 748, 804, 976, 982, 1020, 1075
Hpy188III TCNNGA 5 cut(s) 35, 297, 519, 593, 634
Hpy8I GTNNAC 2 cut(s) 186, 1005
HpyAV CCTTC 4 cut(s) 291, 456, 979, 981
HpyCH4III ACNGT 3 cut(s) 199, 851, 1169
HpyCH4V TGCA 7 cut(s) 119, 412, 713, 952, 1084, 1108, 1121
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 116, 334, 371, 661, 675
HpyF3I CTNAG 5 cut(s) 267, 375, 469, 651, 935
Hsp92I GRCGYC 1 cut(s) 918
Hsp92II CATG 8 cut(s) 38, 236, 424, 562, 637, 664, 1084, 1093
HspAI GCGC 3 cut(s) 476, 478, 694
Ksp22I TGATCA 2 cut(s) 124, 310
Kzo9I GATC 9 cut(s) 31, 124, 138, 310, 378, 503, 550, 799, 1015
LmnI GCTCC 2 cut(s) 440, 448
LweI GCATC 3 cut(s) 514, 705, 1117
MaeI CTAG 2 cut(s) 54, 716
MaeIII GTNAC 3 cut(s) 728, 854, 1160
MalI GATC 9 cut(s) 33, 126, 140, 312, 380, 505, 552, 801, 1017
MboI GATC 9 cut(s) 31, 124, 138, 310, 378, 503, 550, 799, 1015
MhlI GDGCHC 2 cut(s) 306, 445
MlsI TGGCCA 2 cut(s) 964, 1143
MluCI AATT 3 cut(s) 61, 254, 905
MluNI TGGCCA 2 cut(s) 964, 1143
MlyI GAGTC 1 cut(s) 1010
Mox20I TGGCCA 2 cut(s) 964, 1143
MroXI GAANNNNTTC 1 cut(s) 739
MscI TGGCCA 2 cut(s) 964, 1143
MseI TTAA 5 cut(s) 287, 585, 657, 825, 839
MslI CAYNNNNRTG 1 cut(s) 1094
Msp20I TGGCCA 2 cut(s) 964, 1143
MspA1I CMGCKG 2 cut(s) 473, 771
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 3 cut(s) 216, 320, 922
MspR9I CCNGG 1 cut(s) 922
Mva1269I GAATGC 1 cut(s) 1123
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 6 cut(s) 113, 116, 334, 371, 661, 675
NciI CCSGG 1 cut(s) 922
NdeII GATC 9 cut(s) 31, 124, 138, 310, 378, 503, 550, 799, 1015
NlaIII CATG 8 cut(s) 38, 236, 424, 562, 637, 664, 1084, 1093
NlaIV GGNNCC 1 cut(s) 1177
NmeAIII GCCGAG 2 cut(s) 683, 817
NmuCI GTSAC 2 cut(s) 728, 1160
NsbI TGCGCA 1 cut(s) 695
NspI RCATGY 3 cut(s) 236, 664, 1084
PaeI GCATGC 1 cut(s) 236
PagI TCATGA 2 cut(s) 34, 633
PaqCI CACCTGC 1 cut(s) 110
PauI GCGCGC 1 cut(s) 476
PctI GAATGC 1 cut(s) 1123
PdmI GAANNNNTTC 1 cut(s) 739
PfeI GAWTC 2 cut(s) 40, 977
PflMI CCANNNNNTGG 1 cut(s) 436
PinAI ACCGGT 1 cut(s) 319
PleI GAGTC 1 cut(s) 1009
PpsI GAGTC 1 cut(s) 1009
PshBI ATTAAT 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 1177
PspPI GGNCC 3 cut(s) 609, 754, 1175
PstI CTGCAG 1 cut(s) 121
PteI GCGCGC 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 2 cut(s) 223, 848
RsaNI GTAC 2 cut(s) 222, 847
RseI CAYNNNNRTG 1 cut(s) 1094
SacI GAGCTC 1 cut(s) 445
SaqAI TTAA 5 cut(s) 287, 585, 657, 825, 839
Sau3AI GATC 9 cut(s) 31, 124, 138, 310, 378, 503, 550, 799, 1015
Sau96I GGNCC 3 cut(s) 609, 754, 1175
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 1 cut(s) 1010
ScrFI CCNGG 1 cut(s) 922
SduI GDGCHC 2 cut(s) 306, 445
SfaNI GCATC 3 cut(s) 514, 705, 1117
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 2 cut(s) 754, 1175
SmiMI CAYNNNNRTG 1 cut(s) 1094
SmlI CTYRAG 3 cut(s) 824, 859, 869
SmoI CTYRAG 3 cut(s) 824, 859, 869
SphI GCATGC 1 cut(s) 236
Sse9I AATT 3 cut(s) 61, 254, 905
SsiI CCGC 2 cut(s) 165, 771
SspI AATATT 1 cut(s) 291
SspMI CTAG 2 cut(s) 54, 716
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 1 cut(s) 920
TaaI ACNGT 3 cut(s) 199, 851, 1169
TaqI TCGA 2 cut(s) 518, 549
TaqII GACCGA 2 cut(s) 221, 1163
TasI AATT 3 cut(s) 61, 254, 905
TatI WGTACW 2 cut(s) 221, 846
TfiI GAWTC 2 cut(s) 40, 977
Tru1I TTAA 5 cut(s) 287, 585, 657, 825, 839
Tru9I TTAA 5 cut(s) 287, 585, 657, 825, 839
TscAI CASTG 2 cut(s) 856, 1067
TseFI GTSAC 2 cut(s) 728, 1160
Tsp45I GTSAC 2 cut(s) 728, 1160
TspGWI ACGGA 1 cut(s) 747
TspRI CASTG 2 cut(s) 856, 1067
Van91I CCANNNNNTGG 1 cut(s) 436
Vha464I CTTAAG 1 cut(s) 824
VpaK11BI GGWCC 2 cut(s) 754, 1175
VspI ATTAAT 1 cut(s) 287
XapI RAATTY 2 cut(s) 61, 254
XceI RCATGY 3 cut(s) 236, 664, 1084
XmnI GAANNNNTTC 1 cut(s) 739
XspI CTAG 2 cut(s) 54, 716
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.