Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Reverse (-)

10017617 .. 10018877

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1132000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTTCACTGCCCAAACCCATCACCGCCGTCCCCATCCTCATCCTCCTCGCCGCCTCTCTCTGCCGCGCACTGCCGTCATCAGAGGACCCAGTTCCCGCCCCATGGCCCCACCAATTCCACTCCATCCTGGTAATGAACTACACCGGAACCCTCCAGCTCATCGACCTCTGGTACGACTGGCCCAACGGCCGGAACTTCAACATTATACGGCACCAGCTGGGCTCGGTCGCCTACGACCTGGAGTGGAACAACGGCACCTCCTTCTTCTACACATTGGACTCCGCCCGAGAGTGCAGAACCGTCCAAGTCGAAGTGGGTATTCTCCGACCCGATTGGCTCGACGGAGCCAAGTATCTGGGTCGGCGACACGTGGACGGTGGTTTCTTGTGCAATGTTTGGGAGAAGGCCGACTTCATTACGTATTATGAGGACGTCGATACGAAGCGGCCTGTCCATTGGATTTTCTACACAGGGAGGGAGGCACATGTGATGACGTTTGAGGTTGGGGCAGCGCTTGAGGATGCAAAATGGCAAGCCCCTGTGTACTGCTTTGATAAGAAGAAAACTGATACTCTAGTCCCAGAAGCAGAAGCAGAAGCAGAAGCTGAGTTTTCCATCACTGGTGCTTCTATAGATTGGAGATCTATGAGAAATTCAAATCTTTTAGGATTCAATTTGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.96

Weight (kDa)

5.11

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
AccB1I	GGYRCC	2 cut(s)	213, 257
AccII	CGCG	1 cut(s)	69
AciI	CCGC	6 cut(s)	27, 54, 67, 99, 285, 448
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	655
AcvI	CACGTG	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	2 cut(s)	176, 548
AfeI	AGCGCT	1 cut(s)	516
AfiI	CCNNNNNNNGG	2 cut(s)	105, 192
AflIII	ACRYGT	2 cut(s)	370, 487
AgsI	TTSAA	3 cut(s)	202, 660, 676
AjnI	CCWGG	2 cut(s)	129, 240
AluBI	AGCT	3 cut(s)	160, 220, 608
AluI	AGCT	3 cut(s)	160, 220, 608
AlwNI	CAGNNNCTG	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	288
Aor51HI	AGCGCT	1 cut(s)	516
AoxI	GGCC	5 cut(s)	107, 182, 190, 408, 449
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	655
AspLEI	GCGC	2 cut(s)	71, 517
AspS9I	GGNCC	3 cut(s)	88, 108, 183
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	88
BaeI	ACNNNNGTAYC	2 cut(s)	564, 597
BanI	GGYRCC	2 cut(s)	213, 257
BanII	GRGCYC	1 cut(s)	227
BbrPI	CACGTG	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	4 cut(s)	29, 44, 134, 626
BceAI	ACGGC	5 cut(s)	14, 61, 205, 227, 271
BciT130I	CCWGG	2 cut(s)	131, 242
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	518
BglII	AGATCT	1 cut(s)	644
BisI	GCNGC	4 cut(s)	54, 67, 449, 513
BlsI	GCNGC	4 cut(s)	55, 68, 450, 514
Bme1390I	CCNGG	2 cut(s)	131, 242
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	3 cut(s)	88, 108, 183
BmiI	GGNNCC	6 cut(s)	90, 110, 151, 215, 259, 349
BmrFI	CCNGG	2 cut(s)	131, 242
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	86
BpmI	CTGGAG	2 cut(s)	140, 263
BpuEI	CTTGAG	1 cut(s)	539
BsaAI	YACGTR	2 cut(s)	373, 423
BsaHI	GRCGYC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 192
Bse1I	ACTGG	3 cut(s)	92, 185, 628
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	131, 242
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	4 cut(s)	36, 42, 126, 529
BseLI	CCNNNNNNNGG	2 cut(s)	105, 192
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	3 cut(s)	92, 185, 628
BseRI	GAGGAG	1 cut(s)	38
BseX3I	CGGCCG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	2 cut(s)	193, 231
BshFI	GGCC	5 cut(s)	109, 184, 192, 410, 451
BshNI	GGYRCC	2 cut(s)	213, 257
BsiEI	CGRYCG	2 cut(s)	193, 231
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	147, 193
BslFI	GGGAC	2 cut(s)	17, 566
BslI	CCNNNNNNNGG	2 cut(s)	105, 192
BsmFI	GGGAC	2 cut(s)	17, 566
BsnI	GGCC	5 cut(s)	109, 184, 192, 410, 451
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	644
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	6 cut(s)	27, 54, 67, 99, 285, 448
BspANI	GGCC	5 cut(s)	109, 184, 192, 410, 451
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	6 cut(s)	90, 110, 151, 215, 259, 349
BspT107I	GGYRCC	2 cut(s)	213, 257
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	92, 185, 628
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	644
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	131, 242
Bst4CI	ACNGT	2 cut(s)	304, 380
BstACI	GRCGYC	1 cut(s)	435
BstBAI	YACGTR	2 cut(s)	373, 423
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	609
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	4 cut(s)	36, 42, 126, 529
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	71, 517
BstKTI	GATC	1 cut(s)	647
BstMBI	GATC	1 cut(s)	644
BstMCI	CGRYCG	2 cut(s)	193, 231
BstNI	CCWGG	2 cut(s)	131, 242
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	129, 240
BstSFI	CTRYAG	1 cut(s)	633
BstSNI	TACGTA	1 cut(s)	423
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	644
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	644
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	5 cut(s)	109, 184, 192, 410, 451
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	36, 42, 126, 529
BtsI	GCAGTG	2 cut(s)	8, 71
BtsIMutI	CAGTG	3 cut(s)	8, 71, 621
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	608
CfoI	GCGC	2 cut(s)	71, 517
Cfr13I	GGNCC	3 cut(s)	88, 108, 183
Csp6I	GTAC	2 cut(s)	175, 547
CviAII	CATG	2 cut(s)	105, 488
CviQI	GTAC	2 cut(s)	175, 547
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	1 cut(s)	646
DpnII	GATC	1 cut(s)	644
EaeI	YGGCCR	1 cut(s)	190
EagI	CGGCCG	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	274
EclXI	CGGCCG	1 cut(s)	190
Eco105I	TACGTA	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	88
Eco47III	AGCGCT	1 cut(s)	516
Eco52I	CGGCCG	1 cut(s)	190
Eco72I	CACGTG	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	129, 240
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	2 cut(s)	108, 491
FaiI	YATR	6 cut(s)	106, 209, 429, 489, 635, 650
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	2 cut(s)	17, 566
FatI	CATG	2 cut(s)	104, 487
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	4 cut(s)	54, 67, 449, 513
FokI	GGATG	4 cut(s)	23, 29, 113, 536
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	54, 67, 449, 513
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	2 cut(s)	70, 516
GluI	GCNGC	4 cut(s)	54, 67, 449, 513
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	2 cut(s)	140, 263
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	5 cut(s)	109, 184, 192, 410, 451
HapII	CCGG	2 cut(s)	147, 193
HhaI	GCGC	2 cut(s)	71, 517
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	108, 491
Hin6I	GCGC	2 cut(s)	69, 515
HinP1I	GCGC	2 cut(s)	69, 515
HinfI	GANTC	2 cut(s)	281, 672
HpaII	CCGG	2 cut(s)	147, 193
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	376, 547
Hpy188I	TCNGA	2 cut(s)	85, 329
Hpy188III	TCNNGA	1 cut(s)	684
Hpy8I	GTNNAC	2 cut(s)	376, 547
Hpy99I	CGWCG	2 cut(s)	347, 440
HpyAV	CCTTC	2 cut(s)	274, 400
HpyCH4III	ACNGT	2 cut(s)	304, 380
HpyCH4IV	ACGT	4 cut(s)	372, 422, 435, 497
HpyCH4V	TGCA	3 cut(s)	297, 393, 527
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	4 cut(s)	372, 422, 435, 497
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	108, 491
HspAI	GCGC	2 cut(s)	69, 515
Kzo9I	GATC	1 cut(s)	644
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	4 cut(s)	372, 422, 435, 497
MalI	GATC	1 cut(s)	646
MboI	GATC	1 cut(s)	644
MboII	GAAGA	2 cut(s)	259, 574
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	3 cut(s)	116, 655, 676
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	2 cut(s)	147, 193
MspR9I	CCNGG	2 cut(s)	131, 242
MvaI	CCWGG	2 cut(s)	131, 242
MvnI	CGCG	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	644
NlaIII	CATG	2 cut(s)	108, 491
NlaIV	GGNNCC	6 cut(s)	90, 110, 151, 215, 259, 349
NspI	RCATGY	1 cut(s)	491
PciI	ACATGT	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	672
PkrI	GCNGC	4 cut(s)	55, 68, 450, 514
PleI	GAGTC	1 cut(s)	275
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	275
Ppu21I	YACGTR	2 cut(s)	373, 423
PpuMI	RGGWCCY	1 cut(s)	88
PscI	ACATGT	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	129, 240
PspCI	CACGTG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	2 cut(s)	129, 240
PspN4I	GGNNCC	6 cut(s)	90, 110, 151, 215, 259, 349
PspPI	GGNCC	3 cut(s)	88, 108, 183
PspPPI	RGGWCCY	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	2 cut(s)	176, 548
RsaNI	GTAC	2 cut(s)	175, 547
SatI	GCNGC	4 cut(s)	54, 67, 449, 513
Sau3AI	GATC	1 cut(s)	644
Sau96I	GGNCC	3 cut(s)	88, 108, 183
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	131, 242
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
SnaBI	TACGTA	1 cut(s)	423
Sse9I	AATT	3 cut(s)	116, 655, 676
SsiI	CCGC	6 cut(s)	27, 54, 67, 99, 285, 448
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	2 cut(s)	129, 240
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	304, 380
TaiI	ACGT	4 cut(s)	375, 425, 438, 500
TaqI	TCGA	4 cut(s)	165, 312, 342, 438
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	116, 655, 676
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	3 cut(s)	56, 69, 451
TfiI	GAWTC	1 cut(s)	672
TscAI	CASTG	3 cut(s)	15, 78, 628
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	152, 406
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	3 cut(s)	15, 78, 628
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	655
XceI	RCATGY	1 cut(s)	491
XspI	CTAG	1 cut(s)	578
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.