Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001847.1

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 386

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001847.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 244 bp

ggtcgattttcttcagtattatgaggacgttgtcaccaagaggcctgttctttgggtcttttacacagggagggaggcacatgtgatgacatttgaggtcggagctgtgctcgaagatgcaaagtgtcaagctcctgtctactgttttgataagaaagctgaaagtgataacaagggagcagggttttctatcactggtgcttctatggacggattgataagaagtccggtcatggggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

8.87

Weight (kDa)

4.9

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflIII	ACRYGT	1 cut(s)	80
AluBI	AGCT	3 cut(s)	105, 132, 159
AluI	AGCT	3 cut(s)	105, 132, 159
Alw21I	GWGCWC	1 cut(s)	112
AoxI	GGCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	112
BmsI	GCATC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	234
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	193
CviAII	CATG	2 cut(s)	81, 233
CviJI	RGCY	4 cut(s)	44, 105, 132, 159
CviKI_1	RGCY	4 cut(s)	44, 105, 132, 159
Eco147I	AGGCCT	1 cut(s)	44
FaeI	CATG	2 cut(s)	84, 236
FaiI	YATR	4 cut(s)	22, 82, 207, 234
FatI	CATG	2 cut(s)	80, 232
FblI	GTMKAC	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	2 cut(s)	84, 236
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	84, 236
LmnI	GCTCC	3 cut(s)	102, 137, 177
LpnPI	CCDG	5 cut(s)	52, 58, 148, 166, 181
LweI	GCATC	1 cut(s)	107
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	3, 126
MhlI	GDGCHC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	17, 34, 64, 68, 89
MspI	CCGG	1 cut(s)	228
NlaIII	CATG	2 cut(s)	84, 236
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	44
PciI	ACATGT	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	5 cut(s)	31, 100, 107, 134, 161
SfaNI	GCATC	1 cut(s)	107
SseBI	AGGCCT	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	4, 112
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	200
Tth111I	GACNNNGTC	1 cut(s)	30
XceI	RCATGY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.