Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

52121494 .. 52122557

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCGTTCCATAGCCAAAACCATCACCACCTCCTTCATTACAATCCTCATCCTCCTCGCCTCTCCTCTCTCCTCCTCACCCCTCCCACATGAACAAGACCCAACACCAACCCCATGGCCCCATCAATTCCATTCAATTCTGGTGATGAACTACACCGGAACCCTCGAAATTATCGACCTCTGGTATGACTGGCCCAACGGTCGAAACTTCAACATCATACAGCACCAGCTGGGTTCAGTCCTCTATGACCTCGAATGGAACAACGGTACCTCCTTCTTCTACAGCTTAGACTCTTCCAAAAACTGCAGAAGCTCTCAACTTGAAGTGGGTATTCTCCGCCCAAATTGGCTTGACGGAGCTGAGTATCTGGGTCAGCGCCACGTGGATGGGTTCCTCTGCAACGTTTGGAACAAGGTCGATTTTCTTCTGTATTATGAGGATGTTGTCACCAAGAGGCCTGTTCATTGGGCCTTTTACACAGGGAGGGAGGCACATGTGATGACATTTGAGGTTGGAGCTGCGCTTGAAGATGCAAAGTGGCAAGCTCCTATCTACTGTTTTGATAAGAAAGCTGAAAGTGATAACAAGGGAGCAGAGTTTCCGATCACTGGTCCTTCTGTGGGTGGATTGCTACGAGTTTATTGGCCTGAACTAGGTGAGAATATATTAATCATGGTGGATATTGCACTTGTTAACTGGTCGGGAAAAGTATTCCTAGCCATTTCAGGACACTTTGCTTTGATAACATTGTTGTCTTGGAGAGGGCAAGCAAGATATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.65

Weight (kDa)

5.45

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	1 cut(s)	337
AclI	AACGTT	1 cut(s)	402
AcvI	CACGTG	1 cut(s)	382
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	3 cut(s)	608, 620, 653
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	4 cut(s)	135, 211, 323, 527
AluBI	AGCT	7 cut(s)	229, 285, 312, 359, 518, 545, 572
AluI	AGCT	7 cut(s)	229, 285, 312, 359, 518, 545, 572
AoxI	GGCC	5 cut(s)	116, 191, 455, 468, 644
ApeKI	GCWGC	1 cut(s)	518
AseI	ATTAAT	1 cut(s)	668
Asp718I	GGTACC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	378, 523
AspS9I	GGNCC	4 cut(s)	117, 192, 468, 611
AsuHPI	GGTGA	5 cut(s)	16, 69, 154, 439, 668
AvaII	GGWCC	1 cut(s)	611
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BanI	GGYRCC	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	3 cut(s)	29, 129, 380
BfaI	CTAG	2 cut(s)	653, 716
BfmI	CTRYAG	2 cut(s)	280, 304
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	4 cut(s)	117, 192, 468, 611
BmiI	GGNNCC	4 cut(s)	119, 160, 268, 392
BmsI	GCATC	1 cut(s)	520
BsaAI	YACGTR	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	608, 620, 653
Bse1I	ACTGG	3 cut(s)	194, 613, 701
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	3 cut(s)	48, 391, 445
BseLI	CCNNNNNNNGG	3 cut(s)	608, 620, 653
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	3 cut(s)	194, 613, 701
BseRI	GAGGAG	4 cut(s)	44, 54, 61, 64
BseXI	GCAGC	1 cut(s)	505
BseYI	CCCAGC	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	5 cut(s)	118, 193, 457, 470, 646
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	608, 620, 653
BsnI	GGCC	5 cut(s)	118, 193, 457, 470, 646
Bsp143I	GATC	1 cut(s)	603
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	5 cut(s)	118, 193, 457, 470, 646
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	119, 160, 268, 392
BspMAI	CTGCAG	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	194, 613, 701
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	603
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	3 cut(s)	200, 266, 557
Bst6I	CTCTTC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	543, 768
BstDEI	CTNAG	2 cut(s)	286, 360
BstDSI	CCRYGG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	651
BstF5I	GGATG	3 cut(s)	48, 391, 445
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	2 cut(s)	378, 523
BstKTI	GATC	1 cut(s)	606
BstMBI	GATC	1 cut(s)	603
BstMCI	CGRYCG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	497
BstSFI	CTRYAG	2 cut(s)	280, 304
BstV1I	GCAGC	1 cut(s)	505
BstXI	CCANNNNNNTGG	2 cut(s)	114, 386
BsuRI	GGCC	5 cut(s)	118, 193, 457, 470, 646
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	48, 391, 445
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	543, 768
CfoI	GCGC	2 cut(s)	378, 523
Cfr13I	GGNCC	4 cut(s)	117, 192, 468, 611
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	4 cut(s)	89, 114, 494, 673
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	2 cut(s)	286, 360
DpnI	GATC	1 cut(s)	605
DpnII	GATC	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	611
Eco72I	CACGTG	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	4 cut(s)	92, 117, 497, 676
FatI	CATG	4 cut(s)	88, 113, 493, 672
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	3 cut(s)	35, 398, 452
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	2 cut(s)	653, 716
GlaI	GCGC	2 cut(s)	377, 522
GluI	GCNGC	1 cut(s)	519
GsaI	CCCAGC	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	5 cut(s)	118, 193, 457, 470, 646
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	2 cut(s)	378, 523
Hin1II	CATG	4 cut(s)	92, 117, 497, 676
Hin6I	GCGC	2 cut(s)	376, 521
HinP1I	GCGC	2 cut(s)	376, 521
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	1 cut(s)	290
HpaI	GTTAAC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	5 cut(s)	16, 69, 154, 439, 668
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	1 cut(s)	603
Hpy188III	TCNNGA	2 cut(s)	702, 726
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	3 cut(s)	43, 283, 624
HpyCH4III	ACNGT	3 cut(s)	200, 266, 557
HpyCH4IV	ACGT	2 cut(s)	381, 402
HpyCH4V	TGCA	4 cut(s)	306, 399, 533, 686
HpyF3I	CTNAG	2 cut(s)	286, 360
HpySE526I	ACGT	2 cut(s)	381, 402
Hsp92II	CATG	4 cut(s)	92, 117, 497, 676
HspAI	GCGC	2 cut(s)	376, 521
KpnI	GGTACC	1 cut(s)	270
KspAI	GTTAAC	1 cut(s)	694
Kzo9I	GATC	1 cut(s)	603
LmnI	GCTCC	4 cut(s)	356, 515, 550, 590
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	2 cut(s)	653, 716
MaeII	ACGT	2 cut(s)	381, 402
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	605
MboI	GATC	1 cut(s)	603
MboII	GAAGA	4 cut(s)	268, 285, 416, 539
MluCI	AATT	4 cut(s)	125, 135, 168, 343
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	493
MseI	TTAA	2 cut(s)	668, 693
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	603
NlaIII	CATG	4 cut(s)	92, 117, 497, 676
NlaIV	GGNNCC	4 cut(s)	119, 160, 268, 392
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	497
PceI	AGGCCT	1 cut(s)	457
PciI	ACATGT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	1 cut(s)	284
PmaCI	CACGTG	1 cut(s)	382
PmlI	CACGTG	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	382
PscI	ACATGT	1 cut(s)	493
PshBI	ATTAAT	1 cut(s)	668
Psp1406I	AACGTT	1 cut(s)	402
PspCI	CACGTG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	4 cut(s)	119, 160, 268, 392
PspPI	GGNCC	4 cut(s)	117, 192, 468, 611
PstI	CTGCAG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	668, 693
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	1 cut(s)	603
Sau96I	GGNCC	4 cut(s)	117, 192, 468, 611
SchI	GAGTC	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	2 cut(s)	280, 304
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	4 cut(s)	125, 135, 168, 343
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	2 cut(s)	653, 716
StuI	AGGCCT	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	200, 266, 557
TaiI	ACGT	2 cut(s)	384, 405
TaqI	TCGA	5 cut(s)	165, 174, 202, 252, 417
TasI	AATT	4 cut(s)	125, 135, 168, 343
Tru1I	TTAA	2 cut(s)	668, 693
Tru9I	TTAA	2 cut(s)	668, 693
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	4 cut(s)	25, 105, 161, 452
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	611
VspI	ATTAAT	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	651
XceI	RCATGY	1 cut(s)	497
XspI	CTAG	2 cut(s)	653, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.