Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

50963972 .. 50969001

Gene Structure 5030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG288300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCTTCTTCCATAGCCAAACTCAACACCTCCTTCATCGCAATCCTCATCCTCCTCACCTCTCCTCTCTCCTCCTCATCTCTCCCAAACGAACCAGACCCATTACCGACCCCATGGCCCCATCAATTCCACTCAATTCTGGTGATGAACTACAGCGGAAGCCTACAGATAATCGACCTCTGGTACGACTGGCCCAACGGTCGAAACTTCAACATCGTACAGGATCAGCTGGGTTCAATCCTCTACGACCTCGAATGGAACAACGGCACCTCCTTCTTCTACAGCTTAGACTCTTCCAAAAGCTGCAGCAGCGTTCAACTTGAAGTAGGTATTCTCCGCCCCAATTGGTTCGACGGAGCTGAGTATATGGGTCAGCGCCACGTGGATGGGTTCCTCTGCAACGTTTGGACCAAGGTCGATTTTCTTCAGTATTATGAGGACGTTGTCACCAAGAGGCCTGTTCTTTGGGTCTTTTACACAGGGAGGGAGGCACATGTGATGACATTTGAGGTCGGAGCTGTGCTCGAAGATGCAAAGTGGCAAGCTCCTGTCTACTGTTTTGATAAGAAAGCTGAAAGTGATAACAAGGGAGCAGGGTTTTCTATCACTGGTGCTTCTATGGACGGATTGATAAGAAGTCCGGTCATGGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.57

Weight (kDa)

4.77

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	2 cut(s)	156, 337
AclI	AACGTT	1 cut(s)	402
AclWI	GGATC	1 cut(s)	231
AcuI	CTGAAG	1 cut(s)	410
AcvI	CACGTG	1 cut(s)	382
AfaI	GTAC	2 cut(s)	185, 219
AfiI	CCNNNNNNNGG	1 cut(s)	647
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	4 cut(s)	211, 237, 317, 323
AluBI	AGCT	7 cut(s)	229, 285, 303, 359, 518, 545, 572
AluI	AGCT	7 cut(s)	229, 285, 303, 359, 518, 545, 572
Alw21I	GWGCWC	1 cut(s)	525
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	3 cut(s)	116, 191, 455
ApeKI	GCWGC	3 cut(s)	303, 306, 309
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	3 cut(s)	117, 192, 408
AsuHPI	GGTGA	3 cut(s)	49, 154, 439
AvaII	GGWCC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	290, 318, 321
BccI	CCATC	2 cut(s)	129, 380
BceAI	ACGGC	1 cut(s)	280
BfmI	CTRYAG	4 cut(s)	151, 164, 280, 304
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	3 cut(s)	304, 307, 310
BlsI	GCNGC	3 cut(s)	305, 308, 311
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	3 cut(s)	117, 192, 408
BmiI	GGNNCC	3 cut(s)	119, 268, 392
BmsI	GCATC	1 cut(s)	520
BoxI	GACNNNNGTC	1 cut(s)	413
BplI	GAGNNNNNCTC	2 cut(s)	507, 539
BsaAI	YACGTR	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	113, 411
BsaWI	WCCGGW	1 cut(s)	640
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	194, 613
BseDI	CCNNGG	2 cut(s)	113, 411
BseGI	GGATG	2 cut(s)	48, 391
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	194, 613
BseRI	GAGGAG	4 cut(s)	44, 54, 61, 64
BseXI	GCAGC	3 cut(s)	290, 318, 321
BseYI	CCCAGC	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	118, 193, 457
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	525
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	647
BsnI	GGCC	3 cut(s)	118, 193, 457
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	2 cut(s)	156, 337
BspANI	GGCC	3 cut(s)	118, 193, 457
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	119, 268, 392
BspMAI	CTGCAG	1 cut(s)	308
BspPI	GGATC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	194, 613
BssECI	CCNNGG	2 cut(s)	113, 411
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	2 cut(s)	113, 411
Bst4CI	ACNGT	2 cut(s)	200, 557
Bst6I	CTCTTC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	286, 360
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	48, 391
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	497
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSFI	CTRYAG	4 cut(s)	151, 164, 280, 304
BstV1I	GCAGC	3 cut(s)	290, 318, 321
BstXI	CCANNNNNNTGG	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	118, 193, 457
BtgI	CCRYGG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	48, 391
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	3 cut(s)	117, 192, 408
Csp6I	GTAC	2 cut(s)	184, 218
CviAII	CATG	3 cut(s)	114, 494, 646
CviQI	GTAC	2 cut(s)	184, 218
DdeI	CTNAG	2 cut(s)	286, 360
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	113, 411
Eco147I	AGGCCT	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	410
Eco72I	CACGTG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	113, 411
ErhI	CCWWGG	2 cut(s)	113, 411
FaeI	CATG	3 cut(s)	117, 497, 649
FaiI	YATR	8 cut(s)	14, 115, 366, 368, 435, 495, 620, 647
FatI	CATG	3 cut(s)	113, 493, 645
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	304, 307, 310
FokI	GGATG	2 cut(s)	35, 398
Fsp4HI	GCNGC	3 cut(s)	304, 307, 310
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	304, 307, 310
GsaI	CCCAGC	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	3 cut(s)	118, 193, 457
HapII	CCGG	1 cut(s)	641
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	117, 497, 649
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	3 cut(s)	49, 154, 439
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	1 cut(s)	515
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	43, 283
HpyCH4III	ACNGT	2 cut(s)	200, 557
HpyCH4IV	ACGT	3 cut(s)	381, 402, 441
HpyCH4V	TGCA	3 cut(s)	306, 399, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	2 cut(s)	286, 360
HpySE526I	ACGT	3 cut(s)	381, 402, 441
Hsp92II	CATG	3 cut(s)	117, 497, 649
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	4 cut(s)	356, 515, 550, 590
Lsp1109I	GCAGC	3 cut(s)	290, 318, 321
LweI	GCATC	1 cut(s)	520
MaeII	ACGT	3 cut(s)	381, 402, 441
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	4 cut(s)	268, 285, 416, 539
MfeI	CAATTG	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	3 cut(s)	125, 135, 343
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	493
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	156, 229
MspI	CCGG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	117, 497, 649
NlaIV	GGNNCC	3 cut(s)	119, 268, 392
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	497
PceI	AGGCCT	1 cut(s)	457
PciI	ACATGT	1 cut(s)	493
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	3 cut(s)	305, 308, 311
PleI	GAGTC	1 cut(s)	284
PmaCI	CACGTG	1 cut(s)	382
PmlI	CACGTG	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	382
PscI	ACATGT	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	402
PspCI	CACGTG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	119, 268, 392
PspPI	GGNCC	3 cut(s)	117, 192, 408
PstI	CTGCAG	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	2 cut(s)	185, 219
RsaNI	GTAC	2 cut(s)	184, 218
RseI	CAYNNNNRTG	1 cut(s)	384
SatI	GCNGC	3 cut(s)	304, 307, 310
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	3 cut(s)	117, 192, 408
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	4 cut(s)	151, 164, 280, 304
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	125, 135, 343
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	2 cut(s)	156, 337
StuI	AGGCCT	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	113, 411
TaaI	ACNGT	2 cut(s)	200, 557
TaiI	ACGT	3 cut(s)	384, 405, 444
TaqI	TCGA	6 cut(s)	174, 202, 252, 351, 417, 525
TasI	AATT	3 cut(s)	125, 135, 343
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	303, 306, 309
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	25, 161
TspGWI	ACGGA	2 cut(s)	369, 639
TspRI	CASTG	1 cut(s)	613
Tth111I	GACNNNGTC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	408
XceI	RCATGY	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.