Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8470925.1

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1026

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8470925.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

tacgtgaacaacagcggagctcttcaaattttggacctgtggtacgactggcccaacggtcggaacttcaacataatccagaaccaactgggaaagctcaagtacgacctggagtgggacaatggcacttcctacgtctacactttggactccgaccgggaatgcagggtcttgcattttgaggtgggcattctccgacccaactggctcgacggtgcaacttatctgggtcagcgccacgtggacggcttcctctgcaatgtgtgggagaaggttgacttcatctggtactatgaggacgttgtcactaagagacctgtccactggctcttctacacagggatgagtgctcatgtgatgacatttgaggtgggagcacaacttgaggatgaaaagtggaatgctcctgtttactgtttcgaggaggctgctcagttggaaagtaataagagctccctggttgaacctatggcaagaaattattctcatgggaggctggcgagaggagtattggatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

20.24

Weight (kDa)

4.93

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	27
AcvI	CACGTG	1 cut(s)	241
AfaI	GTAC	3 cut(s)	44, 104, 290
AfiI	CCNNNNNNNGG	2 cut(s)	60, 115
AgsI	TTSAA	3 cut(s)	26, 70, 464
AjnI	CCWGG	2 cut(s)	108, 456
AluBI	AGCT	3 cut(s)	20, 97, 453
AluI	AGCT	3 cut(s)	20, 97, 453
Alw21I	GWGCWC	4 cut(s)	22, 352, 379, 455
Alw26I	GTCTC	1 cut(s)	307
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	34, 51
AsuC2I	CCSGG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	22, 455
BbrPI	CACGTG	1 cut(s)	241
Bbv12I	GWGCWC	4 cut(s)	22, 352, 379, 455
BbvI	GCAGC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BciT130I	CCWGG	2 cut(s)	110, 458
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	307
BfoI	RGCGCY	1 cut(s)	238
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	110, 158, 458
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 51
BmrFI	CCNGG	3 cut(s)	110, 158, 458
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	131
BpuEI	CTTGAG	2 cut(s)	83, 404
BpuMI	CCSGG	1 cut(s)	158
BsaAI	YACGTR	2 cut(s)	4, 241
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 115
Bse1I	ACTGG	4 cut(s)	53, 93, 209, 329
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	110, 458
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	3 cut(s)	348, 394, 520
BseLI	CCNNNNNNNGG	2 cut(s)	60, 115
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	4 cut(s)	53, 93, 209, 329
BseRI	GAGGAG	2 cut(s)	437, 519
BseXI	GCAGC	1 cut(s)	415
Bsh1285I	CGRYCG	2 cut(s)	61, 157
BshFI	GGCC	1 cut(s)	52
BsiEI	CGRYCG	2 cut(s)	61, 157
BsiHKAI	GWGCWC	4 cut(s)	22, 352, 379, 455
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	60, 115
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	3 cut(s)	167, 189, 406
BsnI	GGCC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	307
Bsp1286I	GDGCHC	4 cut(s)	22, 352, 379, 455
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	445
BspQI	GCTCTTC	2 cut(s)	27, 335
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	4 cut(s)	53, 93, 209, 329
BssECI	CCNNGG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	110, 458
Bst4CI	ACNGT	3 cut(s)	59, 215, 416
Bst6I	CTCTTC	2 cut(s)	27, 335
BstBAI	YACGTR	2 cut(s)	4, 241
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	309, 432
BstF5I	GGATG	3 cut(s)	348, 394, 520
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	307
BstMCI	CGRYCG	2 cut(s)	61, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	2 cut(s)	110, 458
BstSCI	CCNGG	3 cut(s)	108, 156, 456
BstV1I	GCAGC	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	348, 394, 520
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	34, 51
Csp6I	GTAC	3 cut(s)	43, 103, 289
CviAII	CATG	2 cut(s)	353, 488
CviJI	RGCY	9 cut(s)	20, 52, 97, 208, 249, 328, 428, 453, 496
CviKI_1	RGCY	9 cut(s)	20, 52, 97, 208, 249, 328, 428, 453, 496
CviQI	GTAC	3 cut(s)	43, 103, 289
DdeI	CTNAG	2 cut(s)	309, 432
Eam1104I	CTCTTC	2 cut(s)	27, 335
EarI	CTCTTC	2 cut(s)	27, 335
Ecl136II	GAGCTC	2 cut(s)	20, 453
Eco24I	GRGCYC	2 cut(s)	22, 455
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	2 cut(s)	20, 453
Eco72I	CACGTG	1 cut(s)	241
EcoICRI	GAGCTC	2 cut(s)	20, 453
EcoRII	CCWGG	2 cut(s)	108, 456
EcoT38I	GRGCYC	2 cut(s)	22, 455
FaeI	CATG	2 cut(s)	356, 491
FaiI	YATR	5 cut(s)	74, 294, 354, 470, 489
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	352, 487
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	355, 401
FriOI	GRGCYC	2 cut(s)	22, 455
Fsp4HI	GCNGC	1 cut(s)	429
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	356, 491
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	157
Hpy166II	GTNNAC	6 cut(s)	7, 139, 244, 277, 322, 412
Hpy188I	TCNGA	3 cut(s)	63, 154, 197
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	6 cut(s)	7, 139, 244, 277, 322, 412
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	3 cut(s)	59, 215, 416
HpyCH4IV	ACGT	4 cut(s)	3, 135, 240, 300
HpyCH4V	TGCA	4 cut(s)	165, 175, 218, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	309, 432
HpySE526I	ACGT	4 cut(s)	3, 135, 240, 300
Hsp92II	CATG	2 cut(s)	356, 491
HspAI	GCGC	1 cut(s)	235
LguI	GCTCTTC	2 cut(s)	27, 335
LmnI	GCTCC	4 cut(s)	17, 374, 409, 458
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	505
MaeII	ACGT	4 cut(s)	3, 135, 240, 300
MaeIII	GTNAC	1 cut(s)	304
MboII	GAAGA	2 cut(s)	14, 322
MhlI	GDGCHC	4 cut(s)	22, 352, 379, 455
MluCI	AATT	2 cut(s)	27, 478
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	4 cut(s)	41, 177, 220, 417
MnlI	CCTC	9 cut(s)	175, 263, 289, 361, 379, 415, 418, 486, 497
MroXI	GAANNNNTTC	1 cut(s)	481
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	3 cut(s)	110, 158, 458
Mva1269I	GAATGC	3 cut(s)	167, 189, 406
MvaI	CCWGG	2 cut(s)	110, 458
MwoI	GCNNNNNNNGC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	158
NlaIII	CATG	2 cut(s)	356, 491
NmuCI	GTSAC	1 cut(s)	304
PciSI	GCTCTTC	2 cut(s)	27, 335
PctI	GAATGC	3 cut(s)	167, 189, 406
PdmI	GAANNNNTTC	1 cut(s)	481
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	2 cut(s)	4, 241
Psp124BI	GAGCTC	2 cut(s)	22, 455
Psp6I	CCWGG	2 cut(s)	108, 456
PspCI	CACGTG	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	108, 456
PspPI	GGNCC	2 cut(s)	34, 51
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	3 cut(s)	44, 104, 290
RsaNI	GTAC	3 cut(s)	43, 103, 289
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	2 cut(s)	22, 455
SapI	GCTCTTC	2 cut(s)	27, 335
SatI	GCNGC	1 cut(s)	429
Sau96I	GGNCC	2 cut(s)	34, 51
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	110, 158, 458
SduI	GDGCHC	4 cut(s)	22, 352, 379, 455
SfaNI	GCATC	1 cut(s)	505
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	98, 383
SmoI	CTYRAG	2 cut(s)	98, 383
Sse9I	AATT	2 cut(s)	27, 478
SsiI	CCGC	1 cut(s)	15
SstI	GAGCTC	2 cut(s)	22, 455
StyD4I	CCNGG	3 cut(s)	108, 156, 456
TaaI	ACNGT	3 cut(s)	59, 215, 416
TaiI	ACGT	4 cut(s)	6, 138, 243, 303
TaqI	TCGA	2 cut(s)	210, 420
TasI	AATT	2 cut(s)	27, 478
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	271, 405
TspRI	CASTG	1 cut(s)	329
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.