Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

25312800 .. 25314003

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCTTCTTCCATTGCCAAAGCCATCATCACCTCCTTCATCACGATCCTCATCCTCCTCACCTCTCCTCTCTCCTCCTCCTCATCCCTCCCACACGAACAAGACCCAAGACCAACTCCATGGCCACACCAGTTCCACTCAATTCTGATGATGAACTACACGGGCACCCTCGAAATTATCAACCTCTGGTACGACTGGCCCAACGGTCGAAACTTCAACATCATACAGCACCAGCTGGGTTCAATCCTCTACGACCTCGAGTGGAACAATGGGACCTCCTTCTTCTACAGCTTGGACTCATCCAAAACGTGCACAAGCTCTCAGCTTGAGGTGGGTATTCTCCGGCCTAATTGGCTCGACGGAGCTGAGTATCTGGGTCAGCGCCACGTGGATGGGTTCCTCTGCAACGTTTGGAACAAGGTCGATTTTCTTCTGTACTATGAGGACGTTGTCACCAAGAGACCTGTTCATTGGGCCTTTTACACTGGGAGAGAGGCACATGTGATGACATTTGAGGTTGGGGCAGTGCTTGAAGATGCAACGTGGCAAGCTCCTGTGTACTGTTTTGATCAGAAAGCTGAAAATGATAACAAGGGAGGAGAGTTTTCGATCACTGGTGGTTATGTGGATGGATTGCTAAGAGGTCCGTTTCGAAGTGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

25.19

Weight (kDa)

5.13

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	388
AfaI	GTAC	3 cut(s)	191, 437, 560
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	3 cut(s)	217, 243, 533
AluBI	AGCT	7 cut(s)	235, 291, 318, 325, 365, 551, 578
AluI	AGCT	7 cut(s)	235, 291, 318, 325, 365, 551, 578
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	454
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	4 cut(s)	122, 197, 344, 474
ApaLI	GTGCAC	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	4 cut(s)	198, 273, 474, 644
AsuHPI	GGTGA	3 cut(s)	22, 52, 445
AsuII	TTCGAA	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	273, 644
BaeGI	GKGCMC	2 cut(s)	167, 314
BalI	TGGCCA	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	164
BbrPI	CACGTG	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	314
BccI	CCATC	3 cut(s)	32, 386, 623
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	286
BfoI	RGCGCY	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	352
Bme18I	GGWCC	2 cut(s)	273, 644
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	4 cut(s)	198, 273, 474, 644
BmiI	GGNNCC	3 cut(s)	166, 274, 398
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	526
BmuI	ACTGGG	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	119
Bse1I	ACTGG	4 cut(s)	130, 200, 490, 619
Bse3DI	GCAATG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	5 cut(s)	51, 83, 299, 397, 634
BseJI	GATNNNNATC	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	335, 357
BseNI	ACTGG	4 cut(s)	130, 200, 490, 619
BseRI	GAGGAG	6 cut(s)	47, 57, 64, 67, 70, 612
BseSI	GKGCMC	2 cut(s)	167, 314
BseYI	CCCAGC	1 cut(s)	235
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	4 cut(s)	124, 199, 346, 476
BshNI	GGYRCC	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	4 cut(s)	124, 199, 346, 476
Bso31I	GGTCTC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	257
Bsp119I	TTCGAA	1 cut(s)	652
Bsp1286I	GDGCHC	2 cut(s)	167, 314
Bsp143I	GATC	3 cut(s)	45, 568, 609
Bsp19I	CCATGG	1 cut(s)	119
BspANI	GGCC	4 cut(s)	124, 199, 346, 476
BspCNI	CTCAG	2 cut(s)	334, 358
BspLI	GGNNCC	3 cut(s)	166, 274, 398
BspPI	GGATC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	652
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	4 cut(s)	130, 200, 490, 619
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	3 cut(s)	45, 568, 609
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	206, 563
BstBAI	YACGTR	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	652
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	3 cut(s)	321, 366, 638
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	5 cut(s)	51, 83, 299, 397, 634
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	3 cut(s)	48, 571, 612
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	3 cut(s)	45, 568, 609
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNSI	RCATGY	1 cut(s)	503
BstSFI	CTRYAG	1 cut(s)	286
BstSLI	GKGCMC	2 cut(s)	167, 314
BstXI	CCANNNNNNTGG	2 cut(s)	120, 392
BsuRI	GGCC	4 cut(s)	124, 199, 346, 476
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	5 cut(s)	51, 83, 299, 397, 634
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	483, 531, 612
Cac8I	GCNNGC	1 cut(s)	549
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	4 cut(s)	198, 273, 474, 644
Csp6I	GTAC	3 cut(s)	190, 436, 559
CviAII	CATG	2 cut(s)	120, 500
CviQI	GTAC	3 cut(s)	190, 436, 559
DdeI	CTNAG	3 cut(s)	321, 366, 638
DpnI	GATC	3 cut(s)	47, 570, 611
DpnII	GATC	3 cut(s)	45, 568, 609
EaeI	YGGCCR	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	2 cut(s)	273, 644
Eco72I	CACGTG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	2 cut(s)	123, 503
FaiI	YATR	5 cut(s)	121, 224, 441, 501, 624
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	119, 499
FbaI	TGATCA	1 cut(s)	568
FokI	GGATG	5 cut(s)	38, 70, 286, 404, 641
GlaI	GCGC	1 cut(s)	383
GsaI	CCCAGC	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	4 cut(s)	124, 199, 346, 476
HapII	CCGG	1 cut(s)	343
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	2 cut(s)	123, 503
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	3 cut(s)	22, 52, 445
Hpy166II	GTNNAC	2 cut(s)	312, 559
Hpy188I	TCNGA	2 cut(s)	147, 573
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	2 cut(s)	312, 559
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	46, 289
HpyCH4III	ACNGT	2 cut(s)	206, 563
HpyCH4IV	ACGT	5 cut(s)	308, 387, 408, 447, 542
HpyCH4V	TGCA	3 cut(s)	312, 405, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	3 cut(s)	321, 366, 638
HpySE526I	ACGT	5 cut(s)	308, 387, 408, 447, 542
Hsp92II	CATG	2 cut(s)	123, 503
HspAI	GCGC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	3 cut(s)	45, 568, 609
LmnI	GCTCC	2 cut(s)	362, 556
LweI	GCATC	1 cut(s)	526
MaeII	ACGT	5 cut(s)	308, 387, 408, 447, 542
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	3 cut(s)	47, 570, 611
MboI	GATC	3 cut(s)	45, 568, 609
MboII	GAAGA	3 cut(s)	274, 422, 545
MhlI	GDGCHC	2 cut(s)	167, 314
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	3 cut(s)	141, 174, 349
MluNI	TGGCCA	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	290
Mox20I	TGGCCA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	124
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	352
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	3 cut(s)	45, 568, 609
NlaIII	CATG	2 cut(s)	123, 503
NlaIV	GGNNCC	3 cut(s)	166, 274, 398
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	503
NspV	TTCGAA	1 cut(s)	652
PaeR7I	CTCGAG	1 cut(s)	257
PciI	ACATGT	1 cut(s)	499
PflFI	GACNNNGTC	1 cut(s)	449
PleI	GAGTC	1 cut(s)	290
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	273
PscI	ACATGT	1 cut(s)	499
Psp1406I	AACGTT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	273
PspCI	CACGTG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	166, 274, 398
PspPI	GGNCC	4 cut(s)	198, 273, 474, 644
PspPPI	RGGWCCY	1 cut(s)	273
PspXI	VCTCGAGB	1 cut(s)	257
PsyI	GACNNNGTC	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	3 cut(s)	191, 437, 560
RsaNI	GTAC	3 cut(s)	190, 436, 559
RseI	CAYNNNNRTG	1 cut(s)	390
Sau3AI	GATC	3 cut(s)	45, 568, 609
Sau96I	GGNCC	4 cut(s)	198, 273, 474, 644
SchI	GAGTC	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	167, 314
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	286
Sfr274I	CTCGAG	1 cut(s)	257
SfuI	TTCGAA	1 cut(s)	652
SinI	GGWCC	2 cut(s)	273, 644
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	257, 326
SmoI	CTYRAG	2 cut(s)	257, 326
Sse9I	AATT	3 cut(s)	141, 174, 349
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	206, 563
TaiI	ACGT	5 cut(s)	311, 390, 411, 450, 545
TaqI	TCGA	7 cut(s)	171, 208, 258, 357, 423, 608, 652
TasI	AATT	3 cut(s)	141, 174, 349
TatI	WGTACW	2 cut(s)	435, 558
TscAI	CASTG	3 cut(s)	490, 531, 619
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	28, 167, 458
TspGWI	ACGGA	2 cut(s)	375, 636
TspRI	CASTG	3 cut(s)	490, 531, 619
Tth111I	GACNNNGTC	1 cut(s)	449
VneI	GTGCAC	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	273, 644
XceI	RCATGY	1 cut(s)	503
XhoI	CTCGAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.