Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Reverse (-)

59638800 .. 59642765

Gene Structure 3966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCTCTGCACCAACCACACCTATCTCCTTGTTTTTCCTCCTCCTCTTAGTGATCTCCTCCTTAGACATCTCAATTTCCGATGATCCGATTCCGGCGACATGGCCCCACCAATTCCACTCGGTTCTTTACGTGAACAACAGCGGAGCTCTTCAGATGTTGGACCTGTGGTACGACTGGCCCAATGGTCGGAACTTCAACATAATCCAGAACCAACTGGGAAAGCTCAAGTACGACCTGGAGTGGGACAACGGCACTTCCTACGTCTACACTTTGGACTCCGACCGGGAATGCAAGACCCTGCATTTTGATGTGGGCATTCTCCGACCCAACTGGCTCGACGGTGCAACTTATCTGGGTCAGCGCCACGTGGACGGCTTCCTCTGCAATGTGTGGGAGAAGGTTGACTTCATCTGGTACTATGAGGACGTTGTCACTAAGAGACCTGTCCACTGGCTCTTCTACACAGGGATGAGTGCTCATGTGATGACATTTGAGGTGGGAGCCCAACTTGAGGACGAAAAGTGGAATGCTCCTGTTTACTGTTTCGAGGAGGCTGCTCAGTTGGAAAGCAATAAGAGCCCCCTGGTTGAACCTATGGCAAGAAATTATTCTCATGGGAGGCTGGCCAGAGGAGTATTGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.9

Weight (kDa)

4.84

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	137
AcvI	CACGTG	1 cut(s)	370
AfaI	GTAC	3 cut(s)	173, 233, 419
AfiI	CCNNNNNNNGG	3 cut(s)	189, 244, 514
AgsI	TTSAA	2 cut(s)	199, 593
AjnI	CCWGG	2 cut(s)	237, 585
AluBI	AGCT	2 cut(s)	149, 226
AluI	AGCT	2 cut(s)	149, 226
Alw21I	GWGCWC	2 cut(s)	151, 481
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	4 cut(s)	3, 104, 179, 627
ApeKI	GCWGC	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	610
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	3 cut(s)	105, 163, 180
AsuC2I	CCSGG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	629
BanII	GRGCYC	3 cut(s)	151, 508, 584
BbrPI	CACGTG	1 cut(s)	370
Bbv12I	GWGCWC	2 cut(s)	151, 481
BbvI	GCAGC	1 cut(s)	544
BceAI	ACGGC	2 cut(s)	268, 391
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	2 cut(s)	239, 587
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	367
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	3 cut(s)	239, 287, 587
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	105, 163, 180
BmiI	GGNNCC	2 cut(s)	107, 505
BmrFI	CCNGG	3 cut(s)	239, 287, 587
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	212, 533
BpuMI	CCSGG	1 cut(s)	287
BsaAI	YACGTR	2 cut(s)	133, 370
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 244, 514
Bse1I	ACTGG	4 cut(s)	182, 222, 338, 458
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	239, 587
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	2 cut(s)	477, 649
BseLI	CCNNNNNNNGG	3 cut(s)	189, 244, 514
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	4 cut(s)	182, 222, 338, 458
BseRI	GAGGAG	5 cut(s)	32, 35, 49, 566, 648
BseXI	GCAGC	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	4 cut(s)	5, 106, 181, 629
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	151, 481
BsiSI	CCGG	2 cut(s)	95, 286
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	189, 244, 514
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	3 cut(s)	296, 318, 535
BsnI	GGCC	4 cut(s)	5, 106, 181, 629
Bso31I	GGTCTC	1 cut(s)	436
Bsp1286I	GDGCHC	4 cut(s)	151, 481, 508, 584
Bsp143I	GATC	2 cut(s)	54, 85
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	4 cut(s)	5, 106, 181, 629
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	107, 505
BspPI	GGATC	1 cut(s)	80
BspQI	GCTCTTC	2 cut(s)	156, 464
BspTNI	GGTCTC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	394
BsrI	ACTGG	4 cut(s)	182, 222, 338, 458
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	2 cut(s)	54, 85
Bst2UI	CCWGG	2 cut(s)	239, 587
Bst4CI	ACNGT	2 cut(s)	344, 545
Bst6I	CTCTTC	2 cut(s)	156, 464
BstBAI	YACGTR	2 cut(s)	133, 370
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	4 cut(s)	49, 64, 438, 561
BstF5I	GGATG	2 cut(s)	477, 649
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	57, 88
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	2 cut(s)	54, 85
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 579
BstNI	CCWGG	2 cut(s)	239, 587
BstSCI	CCNGG	3 cut(s)	237, 285, 585
BstV1I	GCAGC	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	5, 106, 181, 629
BtsCI	GGATG	2 cut(s)	477, 649
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	627
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	3 cut(s)	105, 163, 180
Csp6I	GTAC	3 cut(s)	172, 232, 418
CviAII	CATG	3 cut(s)	102, 482, 617
CviQI	GTAC	3 cut(s)	172, 232, 418
DdeI	CTNAG	4 cut(s)	49, 64, 438, 561
DpnI	GATC	2 cut(s)	56, 87
DpnII	GATC	2 cut(s)	54, 85
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	2 cut(s)	156, 464
EarI	CTCTTC	2 cut(s)	156, 464
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	3 cut(s)	151, 508, 584
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	137
Eco72I	CACGTG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	237, 585
EcoT38I	GRGCYC	3 cut(s)	151, 508, 584
FaeI	CATG	3 cut(s)	105, 485, 620
FaiI	YATR	6 cut(s)	103, 203, 423, 483, 599, 618
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	101, 481, 616
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	558
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	3 cut(s)	151, 508, 584
Fsp4HI	GCNGC	1 cut(s)	558
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	4 cut(s)	5, 106, 181, 629
HapII	CCGG	2 cut(s)	95, 286
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	105, 485, 620
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	2 cut(s)	91, 278
HpaII	CCGG	2 cut(s)	95, 286
Hpy166II	GTNNAC	6 cut(s)	136, 268, 373, 406, 451, 541
Hpy188I	TCNGA	6 cut(s)	82, 90, 156, 192, 283, 326
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	6 cut(s)	136, 268, 373, 406, 451, 541
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	344, 545
HpyCH4IV	ACGT	4 cut(s)	132, 264, 369, 429
HpyCH4V	TGCA	5 cut(s)	11, 294, 304, 347, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 579
HpyF3I	CTNAG	4 cut(s)	49, 64, 438, 561
HpySE526I	ACGT	4 cut(s)	132, 264, 369, 429
Hsp92II	CATG	3 cut(s)	105, 485, 620
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	54, 85
LguI	GCTCTTC	2 cut(s)	156, 464
LmnI	GCTCC	3 cut(s)	146, 503, 538
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	634
MaeII	ACGT	4 cut(s)	132, 264, 369, 429
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	2 cut(s)	56, 87
MboI	GATC	2 cut(s)	54, 85
MboII	GAAGA	2 cut(s)	143, 451
MhlI	GDGCHC	4 cut(s)	151, 481, 508, 584
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	3 cut(s)	75, 113, 607
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	5 cut(s)	141, 170, 306, 349, 546
Mox20I	TGGCCA	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	629
MslI	CAYNNNNRTG	2 cut(s)	309, 470
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	95, 286
MspR9I	CCNGG	3 cut(s)	239, 287, 587
Mva1269I	GAATGC	3 cut(s)	296, 318, 535
MvaI	CCWGG	2 cut(s)	239, 587
MwoI	GCNNNNNNNGC	2 cut(s)	384, 579
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	2 cut(s)	54, 85
NlaIII	CATG	3 cut(s)	105, 485, 620
NlaIV	GGNNCC	2 cut(s)	107, 505
NmuCI	GTSAC	1 cut(s)	433
PciSI	GCTCTTC	2 cut(s)	156, 464
PctI	GAATGC	3 cut(s)	296, 318, 535
PdmI	GAANNNNTTC	1 cut(s)	610
PfeI	GAWTC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	559
PleI	GAGTC	1 cut(s)	272
PmaCI	CACGTG	1 cut(s)	370
PmlI	CACGTG	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	2 cut(s)	133, 370
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	237, 585
PspCI	CACGTG	1 cut(s)	370
PspGI	CCWGG	2 cut(s)	237, 585
PspN4I	GGNNCC	2 cut(s)	107, 505
PspPI	GGNCC	3 cut(s)	105, 163, 180
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	3 cut(s)	173, 233, 419
RsaNI	GTAC	3 cut(s)	172, 232, 418
RseI	CAYNNNNRTG	2 cut(s)	309, 470
SacI	GAGCTC	1 cut(s)	151
SapI	GCTCTTC	2 cut(s)	156, 464
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	2 cut(s)	54, 85
Sau96I	GGNCC	3 cut(s)	105, 163, 180
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	3 cut(s)	239, 287, 587
SduI	GDGCHC	4 cut(s)	151, 481, 508, 584
SfaNI	GCATC	1 cut(s)	634
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	309, 470
SmlI	CTYRAG	2 cut(s)	227, 512
SmoI	CTYRAG	2 cut(s)	227, 512
Sse9I	AATT	3 cut(s)	75, 113, 607
SsiI	CCGC	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	3 cut(s)	237, 285, 585
TaaI	ACNGT	2 cut(s)	344, 545
TaiI	ACGT	4 cut(s)	135, 267, 372, 432
TaqI	TCGA	2 cut(s)	339, 549
TasI	AATT	3 cut(s)	75, 113, 607
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	1 cut(s)	458
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	557
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	400
TspRI	CASTG	1 cut(s)	458
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.