Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

39048145 .. 39048552

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCTTCTTCCATACCCAAAGTCAACACCTCCTTCATCGCAATTCTCATCCTCCTCACCTCTCCTCTCTCCTCCTCATCTCTACCACACGAACCAGACCCAGTACCGACCCCATGGCCCCACCAATTCCACTCAATTCTGGTGATGAACTACAACGAAACACTCCAGATAATCGACCTCTGGTACGATTGGCCCAACGGTCCAAACTTCAACATCGTACAGGACCAGCTGGGTTCAATACTTTATGACCTCGAATGGAACAACGGCACCTCCTTCTACAGCTTAGACTCTTCCAAAAGCTGCAGTAGCGTTCAACTTGAAGTAGGTATTCTCTGCCCAAATTGGCTCGACAGAGCTCAGTATCTGGGTCCAACGCCACATAGACCATATTTCAATTGCGTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.32

Weight (kDa)

4.81

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AfaI	GTAC	3 cut(s)	105, 185, 219
AgsI	TTSAA	5 cut(s)	211, 237, 314, 320, 394
AluBI	AGCT	4 cut(s)	229, 282, 300, 356
AluI	AGCT	4 cut(s)	229, 282, 300, 356
Alw21I	GWGCWC	1 cut(s)	358
AlwNI	CAGNNNCTG	1 cut(s)	364
AoxI	GGCC	2 cut(s)	116, 191
ApeKI	GCWGC	1 cut(s)	300
AspS9I	GGNCC	5 cut(s)	117, 192, 200, 223, 368
AsuHPI	GGTGA	2 cut(s)	49, 154
AvaII	GGWCC	3 cut(s)	200, 223, 368
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	280
BfmI	CTRYAG	2 cut(s)	277, 301
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme18I	GGWCC	3 cut(s)	200, 223, 368
BmgT120I	GGNCC	5 cut(s)	117, 192, 200, 223, 368
BmiI	GGNNCC	3 cut(s)	119, 268, 369
BmrI	ACTGGG	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse1I	ACTGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	4 cut(s)	44, 54, 61, 64
BseXI	GCAGC	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	229
BshFI	GGCC	2 cut(s)	118, 193
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	118, 193
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	113
BspANI	GGCC	2 cut(s)	118, 193
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	119, 268, 369
BspMAI	CTGCAG	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	283, 357
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	277, 301
BstV1I	GCAGC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	118, 193
BtgI	CCRYGG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	364
Cfr13I	GGNCC	5 cut(s)	117, 192, 200, 223, 368
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	3 cut(s)	104, 184, 218
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	7 cut(s)	118, 193, 229, 282, 300, 346, 356
CviKI_1	RGCY	7 cut(s)	118, 193, 229, 282, 300, 346, 356
CviQI	GTAC	3 cut(s)	104, 184, 218
DdeI	CTNAG	2 cut(s)	283, 357
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	358
Eco47I	GGWCC	3 cut(s)	200, 223, 368
Eco53kI	GAGCTC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	117
FaiI	YATR	5 cut(s)	14, 115, 246, 381, 388
FatI	CATG	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	301
GsaI	CCCAGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	118, 193
HgaI	GACGC	1 cut(s)	388
Hin1II	CATG	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	2 cut(s)	49, 154
Hpy166II	GTNNAC	2 cut(s)	25, 403
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	25, 403
HpyAV	CCTTC	2 cut(s)	43, 283
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	2 cut(s)	283, 357
Hsp92II	CATG	1 cut(s)	117
LpnPI	CCDG	9 cut(s)	108, 114, 125, 166, 179, 206, 215, 239, 350
Lsp1109I	GCAGC	1 cut(s)	287
MboII	GAAGA	1 cut(s)	282
MfeI	CAATTG	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	5 cut(s)	42, 125, 135, 340, 394
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	113
NlaIII	CATG	1 cut(s)	117
NlaIV	GGNNCC	3 cut(s)	119, 268, 369
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	119, 268, 369
PspPI	GGNCC	5 cut(s)	117, 192, 200, 223, 368
PstI	CTGCAG	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	105, 185, 219
RsaNI	GTAC	3 cut(s)	104, 184, 218
SacI	GAGCTC	1 cut(s)	358
SatI	GCNGC	1 cut(s)	301
Sau96I	GGNCC	5 cut(s)	117, 192, 200, 223, 368
SchI	GAGTC	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	358
SfcI	CTRYAG	2 cut(s)	277, 301
SinI	GGWCC	3 cut(s)	200, 223, 368
Sse9I	AATT	5 cut(s)	42, 125, 135, 340, 394
SstI	GAGCTC	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	174, 252, 348
TasI	AATT	5 cut(s)	42, 125, 135, 340, 394
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	25, 161
VpaK11BI	GGWCC	3 cut(s)	200, 223, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.