Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

39187874 .. 39192020

Gene Structure 4147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0227700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAAATGCTGTCAATCATCCAGTTCTTCTTAACAAAGAACAACGGATTTCATATAGGTCAGAATTCCAGTTGATGTGTGAGGATCTGAAGCTCTCTAAATATGATCATTTCTACATCATAAGAACGTTACAATATGTAATTTGTTGTAGAAATGCATCCTACTGTTGGACACACACTCTGAATCAACGACATCCGCCGTCTAAGACTGAGGACTGGATCCAACATGCATTTAAGGATCGTAAATGCACAGAAACGTACACAGATCTGTCCTTTGCTAGTAAATGTCAGAGGGACACTCTGGAAGAGGAATTAACGCTATTTTGGCCTGGTTTTCTTTCTCTGCTCCATGAGGCTGCTAGTAAGTGTGGACACCATATCAACCAGCGGATGGCGAACATGAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

16.22

Weight (kDa)

7.07

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	2 cut(s)	197, 388
AclI	AACGTT	1 cut(s)	128
AclWI	GGATC	4 cut(s)	93, 214, 227, 246
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	168, 391
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
AlwI	GGATC	4 cut(s)	93, 214, 227, 246
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	330
BclI	TGATCA	1 cut(s)	106
BfaI	CTAG	3 cut(s)	279, 360, 409
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 391
Bse1I	ACTGG	3 cut(s)	23, 70, 221
BseBI	CCWGG	1 cut(s)	330
BseGI	GGATG	4 cut(s)	19, 158, 193, 396
BseLI	CCNNNNNNNGG	2 cut(s)	168, 391
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	23, 70, 221
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	168, 391
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	85, 106, 219, 238, 265
BspACI	CCGC	2 cut(s)	197, 388
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	4 cut(s)	93, 214, 227, 246
BsrI	ACTGG	3 cut(s)	23, 70, 221
BssMI	GATC	5 cut(s)	85, 106, 219, 238, 265
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	204, 210
BstF5I	GGATG	4 cut(s)	19, 158, 193, 396
BstKTI	GATC	5 cut(s)	88, 109, 222, 241, 268
BstMBI	GATC	5 cut(s)	85, 106, 219, 238, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	3 cut(s)	85, 219, 265
BstYI	RGATCY	3 cut(s)	85, 219, 265
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	4 cut(s)	19, 158, 193, 396
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	227, 350, 400
CviJI	RGCY	3 cut(s)	94, 328, 356
CviKI_1	RGCY	3 cut(s)	94, 328, 356
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	204, 210
DpnI	GATC	5 cut(s)	87, 108, 221, 240, 267
DpnII	GATC	5 cut(s)	85, 106, 219, 238, 265
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	328
EcoT22I	ATGCAT	2 cut(s)	160, 232
FaeI	CATG	3 cut(s)	230, 353, 403
FaiI	YATR	9 cut(s)	55, 57, 105, 122, 138, 228, 351, 378, 401
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	3 cut(s)	226, 349, 399
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	4 cut(s)	6, 145, 180, 403
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	3 cut(s)	279, 360, 409
GluI	GCNGC	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	230, 353, 403
HinfI	GANTC	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	261, 371
Hpy188I	TCNGA	4 cut(s)	64, 90, 183, 291
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	2 cut(s)	261, 371
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	128, 257
HpyCH4V	TGCA	3 cut(s)	158, 230, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	2 cut(s)	204, 210
HpySE526I	ACGT	2 cut(s)	128, 257
Hsp92II	CATG	3 cut(s)	230, 353, 403
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	85, 106, 219, 238, 265
LmnI	GCTCC	1 cut(s)	351
LpnPI	CCDG	7 cut(s)	36, 83, 202, 287, 315, 342, 398
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	3 cut(s)	279, 360, 409
MaeII	ACGT	2 cut(s)	128, 257
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	5 cut(s)	87, 108, 221, 240, 267
MboI	GATC	5 cut(s)	85, 106, 219, 238, 265
MboII	GAAGA	2 cut(s)	20, 317
MflI	RGATCY	3 cut(s)	85, 219, 265
MluCI	AATT	3 cut(s)	65, 141, 311
MmeI	TCCRAC	2 cut(s)	149, 247
MnlI	CCTC	5 cut(s)	76, 205, 285, 301, 346
Mph1103I	ATGCAT	2 cut(s)	160, 232
MseI	TTAA	3 cut(s)	33, 234, 314
MspA1I	CMGCKG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	5 cut(s)	85, 106, 219, 238, 265
NlaIII	CATG	3 cut(s)	230, 353, 403
NlaIV	GGNNCC	1 cut(s)	221
NsiI	ATGCAT	2 cut(s)	160, 232
NspI	RCATGY	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	358
Psp1406I	AACGTT	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	221
PsuI	RGATCY	3 cut(s)	85, 219, 265
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	33, 234, 314
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	5 cut(s)	85, 106, 219, 238, 265
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	4 cut(s)	62, 96, 131, 260
SfaNI	GCATC	1 cut(s)	167
Sse9I	AATT	3 cut(s)	65, 141, 311
SsiI	CCGC	2 cut(s)	197, 388
SspMI	CTAG	3 cut(s)	279, 360, 409
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	2 cut(s)	131, 260
TasI	AATT	3 cut(s)	65, 141, 311
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	3 cut(s)	33, 234, 314
Tru9I	TTAA	3 cut(s)	33, 234, 314
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	391
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	3 cut(s)	279, 360, 409
Zsp2I	ATGCAT	2 cut(s)	160, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.