Rh4BG291100

At4g14100-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
46344020 .. 46345091
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG291100.1

Sequence Viewer

Length: 660 bp
ATGCCTTCCATAGCCAAAACCATCACCACCTCCTTCATTACAATCCTCATCCTCCTCACCTCTCCTCTCTCCTCCTCACCCCTCCCACATGAACAAGACCCAACACCAACCCCATGGCCCCATCAATTCCATTCAATTCTGGTGATGAACTACACCGGAACCCTCGAAATTATCGACCTCTGGTATGACTGGCCCAACGGTCGAAACTTCAACATCATACAACACCAGCTGGGTTCAGTCCTCTACGACCTCGAATGGAACAACGGCACCTCCTTCTTCTACAGCTTAGACTCTTCCAAAAACTGCAGAAGCTCTCAACTTGAAGTGGGTATTCTCCGCCCAAATTGGCTCGACGGAGCTGAGTATCTGGGTCAGCGCCACGTGGATGGGTTCCTCTGCAACGTTTGGAACAAGGTCGATTTTCTTCTGTATTATGAGGATGTTGTCACCAAGAGGCCTGTTCATTGGGCCTTTTACACAGGGAGGGAGGCACATGTGATGACATTTGAGGTTGGAGCTGCGCTTGAAGATGCAAAGTGGCAAGCTCCTATCTACTGTTTTGATAAGAAAGCTGAAAGTGATCACAAGGGAGCAGAGTTTCCGATCACTGGTCCTTCTGTGGGTGGATTGCTACGAGGTCCGTTTCGAATTGGGATGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.94

Weight (kDa)

5.55

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 1 cut(s) 337
AclI AACGTT 1 cut(s) 402
AcvI CACGTG 1 cut(s) 382
AfiI CCNNNNNNNGG 2 cut(s) 608, 620
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 4 cut(s) 135, 211, 323, 527
AluBI AGCT 7 cut(s) 229, 285, 312, 359, 518, 545, 572
AluI AGCT 7 cut(s) 229, 285, 312, 359, 518, 545, 572
AoxI GGCC 4 cut(s) 116, 191, 455, 468
ApeKI GCWGC 1 cut(s) 518
AspLEI GCGC 2 cut(s) 378, 523
AspS9I GGNCC 5 cut(s) 117, 192, 468, 611, 638
AsuHPI GGTGA 5 cut(s) 16, 49, 69, 154, 439
AsuII TTCGAA 1 cut(s) 646
AvaII GGWCC 2 cut(s) 611, 638
BanI GGYRCC 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 382
BbvI GCAGC 1 cut(s) 505
BccI CCATC 3 cut(s) 29, 129, 380
BceAI ACGGC 1 cut(s) 280
BclI TGATCA 1 cut(s) 580
BfmI CTRYAG 2 cut(s) 280, 304
BfoI RGCGCY 1 cut(s) 379
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme18I GGWCC 2 cut(s) 611, 638
BmgT120I GGNCC 5 cut(s) 117, 192, 468, 611, 638
BmiI GGNNCC 4 cut(s) 119, 160, 268, 392
BmsI GCATC 1 cut(s) 520
Bpu14I TTCGAA 1 cut(s) 646
BsaAI YACGTR 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 608, 620
Bse1I ACTGG 2 cut(s) 194, 613
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 4 cut(s) 48, 391, 445, 660
BseLI CCNNNNNNNGG 2 cut(s) 608, 620
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 194, 613
BseRI GAGGAG 4 cut(s) 44, 54, 61, 64
BseXI GCAGC 1 cut(s) 505
BseYI CCCAGC 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 4 cut(s) 118, 193, 457, 470
BshNI GGYRCC 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 608, 620
BsnI GGCC 4 cut(s) 118, 193, 457, 470
Bsp119I TTCGAA 1 cut(s) 646
Bsp143I GATC 2 cut(s) 580, 603
Bsp19I CCATGG 1 cut(s) 113
BspACI CCGC 1 cut(s) 337
BspANI GGCC 4 cut(s) 118, 193, 457, 470
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 4 cut(s) 119, 160, 268, 392
BspMAI CTGCAG 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 194, 613
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 580, 603
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 200, 557
Bst6I CTCTTC 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 382
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 2 cut(s) 286, 360
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 4 cut(s) 48, 391, 445, 660
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 2 cut(s) 378, 523
BstKTI GATC 2 cut(s) 583, 606
BstMBI GATC 2 cut(s) 580, 603
BstMCI CGRYCG 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 497
BstSFI CTRYAG 2 cut(s) 280, 304
BstV1I GCAGC 1 cut(s) 505
BstXI CCANNNNNNTGG 2 cut(s) 114, 386
BsuRI GGCC 4 cut(s) 118, 193, 457, 470
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 4 cut(s) 48, 391, 445, 660
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 1 cut(s) 543
CfoI GCGC 2 cut(s) 378, 523
Cfr13I GGNCC 5 cut(s) 117, 192, 468, 611, 638
CviAII CATG 3 cut(s) 89, 114, 494
DdeI CTNAG 2 cut(s) 286, 360
DpnI GATC 2 cut(s) 582, 605
DpnII GATC 2 cut(s) 580, 603
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 611, 638
Eco72I CACGTG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 3 cut(s) 92, 117, 497
FaiI YATR 7 cut(s) 11, 90, 115, 186, 218, 435, 495
FatI CATG 3 cut(s) 88, 113, 493
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 3 cut(s) 35, 398, 452
Fsp4HI GCNGC 1 cut(s) 519
GlaI GCGC 2 cut(s) 377, 522
GluI GCNGC 1 cut(s) 519
GsaI CCCAGC 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 4 cut(s) 118, 193, 457, 470
HapII CCGG 1 cut(s) 156
HhaI GCGC 2 cut(s) 378, 523
Hin1II CATG 3 cut(s) 92, 117, 497
Hin6I GCGC 2 cut(s) 376, 521
HinP1I GCGC 2 cut(s) 376, 521
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 156
HphI GGTGA 5 cut(s) 16, 49, 69, 154, 439
Hpy188I TCNGA 1 cut(s) 603
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 4 cut(s) 15, 43, 283, 624
HpyCH4III ACNGT 2 cut(s) 200, 557
HpyCH4IV ACGT 2 cut(s) 381, 402
HpyCH4V TGCA 3 cut(s) 306, 399, 533
HpyF3I CTNAG 2 cut(s) 286, 360
HpySE526I ACGT 2 cut(s) 381, 402
Hsp92II CATG 3 cut(s) 92, 117, 497
HspAI GCGC 2 cut(s) 376, 521
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 2 cut(s) 580, 603
LmnI GCTCC 4 cut(s) 356, 515, 550, 590
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 1 cut(s) 520
MaeII ACGT 2 cut(s) 381, 402
MaeIII GTNAC 1 cut(s) 445
MalI GATC 2 cut(s) 582, 605
MboI GATC 2 cut(s) 580, 603
MboII GAAGA 4 cut(s) 268, 285, 416, 539
MluCI AATT 5 cut(s) 125, 135, 168, 343, 648
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 493
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 113
NdeII GATC 2 cut(s) 580, 603
NlaIII CATG 3 cut(s) 92, 117, 497
NlaIV GGNNCC 4 cut(s) 119, 160, 268, 392
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 497
NspV TTCGAA 1 cut(s) 646
PceI AGGCCT 1 cut(s) 457
PciI ACATGT 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 1 cut(s) 284
PmaCI CACGTG 1 cut(s) 382
PmlI CACGTG 1 cut(s) 382
PpsI GAGTC 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 382
PscI ACATGT 1 cut(s) 493
Psp1406I AACGTT 1 cut(s) 402
PspCI CACGTG 1 cut(s) 382
PspFI CCCAGC 1 cut(s) 229
PspN4I GGNNCC 4 cut(s) 119, 160, 268, 392
PspPI GGNCC 5 cut(s) 117, 192, 468, 611, 638
PstI CTGCAG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 384
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 2 cut(s) 580, 603
Sau96I GGNCC 5 cut(s) 117, 192, 468, 611, 638
SchI GAGTC 1 cut(s) 284
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 2 cut(s) 280, 304
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 2 cut(s) 611, 638
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 5 cut(s) 125, 135, 168, 343, 648
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 1 cut(s) 337
StuI AGGCCT 1 cut(s) 457
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 200, 557
TaiI ACGT 2 cut(s) 384, 405
TaqI TCGA 7 cut(s) 165, 174, 202, 252, 351, 417, 646
TasI AATT 5 cut(s) 125, 135, 168, 343, 648
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 4 cut(s) 25, 105, 161, 452
TspGWI ACGGA 2 cut(s) 369, 630
TspRI CASTG 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 611, 638
XceI RCATGY 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.