Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

53700051 .. 53700837

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCTTCTTCCATAGCCAAACTCAACACCTCCTTCATCGCAATCCTCATCCTCCTCACCTCTCCTCTCTCCTCCTCATCTCTCCCTAACGGAACCCTCCAGATAATCGACCTCTGGTATGACTGGCCCAGCGGTCGAAACTTCAACATCGTACAGGATCAGCTGGGTTCAATCCTCTACGACCTCGAATGGAACAACGGCACCTCCTTCTTCTACAGCTTAGACTCTTCCAAAAGCTGCAGCAGCGTTCAACTTGAAGTAGGTATTCTCCGCCCCAATTGGTTCGACGGAGCTGAGTATATGGGTCAGCGCCACGTGGATGGGCTCCTCTGCAACGTTTGGACCAAGGTCGATTTTCTTCAGTATTATGAGGAAGTTGTCACCAAGAGGCCTGTTCTTTGGGTCTTTTACACAGGGAGGGAGGCACATGCGATGACATTTGAGGTCGGAGCTGTGCTCGAAGATGCAAAGTGGCAAGCTCCTGTCTACTGTTTTGATAAGAAAGCTGAAAGTGATAACAAGGGAGCAGGGTTTTCTATCACTGGTTCTATATATGGACGGATTGATAAGAAGTCCTTTCATGGGGATTTGATTTTTTTTTTAGTGATCTTCATTTTCTATTCATGTGATCCAATGGTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.26

Weight (kDa)

4.89

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	2 cut(s)	132, 271
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	2 cut(s)	165, 623
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	316
AfaI	GTAC	2 cut(s)	153, 639
AfiI	CCNNNNNNNGG	1 cut(s)	582
AgsI	TTSAA	4 cut(s)	145, 171, 251, 257
AluBI	AGCT	7 cut(s)	163, 219, 237, 293, 452, 479, 506
AluI	AGCT	7 cut(s)	163, 219, 237, 293, 452, 479, 506
Alw21I	GWGCWC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	165, 623
AoxI	GGCC	2 cut(s)	125, 389
ApeKI	GCWGC	3 cut(s)	237, 240, 243
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	126, 342
AsuHPI	GGTGA	2 cut(s)	49, 373
AvaII	GGWCC	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	3 cut(s)	224, 252, 255
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	214
BfmI	CTRYAG	2 cut(s)	214, 238
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	3 cut(s)	238, 241, 244
BlsI	GCNGC	3 cut(s)	239, 242, 245
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	126, 342
BmiI	GGNNCC	3 cut(s)	94, 202, 326
BmsI	GCATC	1 cut(s)	454
BoxI	GACNNNNGTC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
BpmI	CTGGAG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse1I	ACTGG	2 cut(s)	128, 547
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	2 cut(s)	48, 325
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	128, 547
BseRI	GAGGAG	5 cut(s)	44, 54, 61, 64, 317
BseXI	GCAGC	3 cut(s)	224, 252, 255
BseYI	CCCAGC	2 cut(s)	128, 163
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	127, 391
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	582
BsnI	GGCC	2 cut(s)	127, 391
Bsp1286I	GDGCHC	2 cut(s)	327, 459
Bsp143I	GATC	3 cut(s)	157, 606, 628
BspACI	CCGC	2 cut(s)	132, 271
BspANI	GGCC	2 cut(s)	127, 391
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	3 cut(s)	94, 202, 326
BspMAI	CTGCAG	1 cut(s)	242
BspPI	GGATC	2 cut(s)	165, 623
BspT107I	GGYRCC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	128, 547
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	3 cut(s)	157, 606, 628
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	220, 294
BstF5I	GGATG	2 cut(s)	48, 325
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	3 cut(s)	160, 609, 631
BstMBI	GATC	3 cut(s)	157, 606, 628
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	431
BstPAI	GACNNNNGTC	1 cut(s)	347
BstSFI	CTRYAG	2 cut(s)	214, 238
BstV1I	GCAGC	3 cut(s)	224, 252, 255
BstXI	CCANNNNNNTGG	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	127, 391
BtgZI	GCGATG	2 cut(s)	22, 446
BtsCI	GGATG	2 cut(s)	48, 325
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	126, 342
Csp6I	GTAC	2 cut(s)	152, 638
CviAII	CATG	3 cut(s)	428, 581, 624
CviQI	GTAC	2 cut(s)	152, 638
DdeI	CTNAG	2 cut(s)	220, 294
DpnI	GATC	3 cut(s)	159, 608, 630
DpnII	GATC	3 cut(s)	157, 606, 628
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	345
Eco147I	AGGCCT	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	3 cut(s)	431, 584, 627
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	3 cut(s)	427, 580, 623
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	238, 241, 244
FokI	GGATG	2 cut(s)	35, 332
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	238, 241, 244
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	3 cut(s)	238, 241, 244
GsaI	CCCAGC	2 cut(s)	132, 167
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	127, 391
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	431, 584, 627
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	224
HphI	GGTGA	2 cut(s)	49, 373
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	43, 217
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	2 cut(s)	315, 336
HpyCH4V	TGCA	3 cut(s)	240, 333, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	2 cut(s)	220, 294
HpySE526I	ACGT	2 cut(s)	315, 336
Hsp92II	CATG	3 cut(s)	431, 584, 627
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	157, 606, 628
LmnI	GCTCC	5 cut(s)	290, 330, 449, 484, 524
Lsp1109I	GCAGC	3 cut(s)	224, 252, 255
LweI	GCATC	1 cut(s)	454
MaeII	ACGT	2 cut(s)	315, 336
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	3 cut(s)	159, 608, 630
MboI	GATC	3 cut(s)	157, 606, 628
MboII	GAAGA	5 cut(s)	202, 219, 350, 473, 601
MfeI	CAATTG	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	327, 459
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	427
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	132, 163
MunI	CAATTG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	3 cut(s)	157, 606, 628
NlaIII	CATG	3 cut(s)	431, 584, 627
NlaIV	GGNNCC	3 cut(s)	94, 202, 326
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	239, 242, 245
PleI	GAGTC	1 cut(s)	218
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	347
Psp1406I	AACGTT	1 cut(s)	336
PspCI	CACGTG	1 cut(s)	316
PspFI	CCCAGC	2 cut(s)	128, 163
PspN4I	GGNNCC	3 cut(s)	94, 202, 326
PspPI	GGNCC	2 cut(s)	126, 342
PstI	CTGCAG	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	2 cut(s)	153, 639
RsaNI	GTAC	2 cut(s)	152, 638
RseI	CAYNNNNRTG	1 cut(s)	318
SatI	GCNGC	3 cut(s)	238, 241, 244
Sau3AI	GATC	3 cut(s)	157, 606, 628
Sau96I	GGNCC	2 cut(s)	126, 342
SchI	GAGTC	1 cut(s)	218
SduI	GDGCHC	2 cut(s)	327, 459
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	2 cut(s)	214, 238
SinI	GGWCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	277
SseBI	AGGCCT	1 cut(s)	391
SsiI	CCGC	2 cut(s)	132, 271
StuI	AGGCCT	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	2 cut(s)	318, 339
TaqI	TCGA	6 cut(s)	108, 136, 186, 285, 351, 459
TasI	AATT	1 cut(s)	277
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	237, 240, 243
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	25, 569, 601, 612
TspGWI	ACGGA	3 cut(s)	105, 303, 574
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	342
XceI	RCATGY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.