Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Reverse (-)

10946112 .. 10947449

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1142300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTTCACTGTCCAAATCCACCGCCGTCGTCCCAATCCTCATCCTCCTCGCCGCCTCTCTCTGCCGCGCACTGCCGTCATCAAAAGACCCAGTTCCCGCCCCATGGCCCCACCAATTCCACTCCATATTGATGATGAACTACACCGGAACCCTCCAGCTGATCGACCTCTGGTACGACTGGCCCAACGGCCGGAACTTCAACATCATACGGCACCAGCTGGGCTCGGTCACCTACGACCTCGAGTGGAACAACGGCACCTCCTTCTTCTACACATTGGACTCCGCCCGAGAGTGCCGAACCGTCCACGTTGAAGTGGGTATTCTCCGACCCGATTGGCTCGACGGAGCCAAGTATCTGGGTCGGCGCCTCGTGGACGGTGGTTTCTTGTGCAATGTTTGGGAGAAGGCCGACTTCATAACGTACTATGAGGACGTTGATACCAATCGGCCTGTCCTTTGGGTTTTCTACACAGGGAGGGAGGCACATGTGATGACATTTGAGGTTGGGGCTGTGCTCGAGGATGCAAAATGGCAAGCCCCTGTGTACTGCTTTGATAACAAGAAAACTGACACTGCCCCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGTTTTCCATCACCGGTGCTTCTATGAATGGAAGGTTTGTGAGAGGTTTAAATCCGTTGGGATTCAATTTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.94

Weight (kDa)

5.0

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	213, 257, 366
AccII	CGCG	1 cut(s)	69
AciI	CCGC	5 cut(s)	24, 54, 67, 99, 285
AcoI	YGGCCR	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	4 cut(s)	176, 425, 548, 686
AfiI	CCNNNNNNNGG	2 cut(s)	105, 192
AflIII	ACRYGT	1 cut(s)	487
AgeI	ACCGGT	1 cut(s)	626
AgsI	TTSAA	3 cut(s)	202, 314, 679
AluBI	AGCT	2 cut(s)	160, 220
AluI	AGCT	2 cut(s)	160, 220
Alw21I	GWGCWC	1 cut(s)	519
Ama87I	CYCGRG	3 cut(s)	242, 288, 518
AoxI	GGCC	5 cut(s)	107, 182, 190, 408, 449
AsiGI	ACCGGT	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	71, 369
AspS9I	GGNCC	2 cut(s)	108, 183
AsuHPI	GGTGA	2 cut(s)	223, 616
AvaI	CYCGRG	3 cut(s)	242, 288, 518
BanI	GGYRCC	3 cut(s)	213, 257, 366
BanII	GRGCYC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	519
BccI	CCATC	1 cut(s)	629
BceAI	ACGGC	5 cut(s)	11, 61, 205, 227, 271
BfoI	RGCGCY	1 cut(s)	370
BisI	GCNGC	2 cut(s)	54, 67
BlsI	GCNGC	2 cut(s)	55, 68
BmeT110I	CYCGRG	3 cut(s)	242, 288, 518
BmgT120I	GGNCC	2 cut(s)	108, 183
BmiI	GGNNCC	6 cut(s)	110, 151, 215, 259, 349, 368
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	104
BsaWI	WCCGGW	2 cut(s)	146, 626
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 192
Bse118I	RCCGGY	1 cut(s)	626
Bse1I	ACTGG	2 cut(s)	92, 185
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	42, 529
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	105, 192
BseMI	GCAATG	1 cut(s)	400
BseNI	ACTGG	2 cut(s)	92, 185
BseRI	GAGGAG	1 cut(s)	38
BseX3I	CGGCCG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	5 cut(s)	109, 184, 192, 410, 451
BshNI	GGYRCC	3 cut(s)	213, 257, 366
BshTI	ACCGGT	1 cut(s)	626
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	3 cut(s)	242, 288, 518
BsiSI	CCGG	3 cut(s)	147, 193, 627
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	105, 192
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	5 cut(s)	109, 184, 192, 410, 451
BsoBI	CYCGRG	3 cut(s)	242, 288, 518
Bsp1286I	GDGCHC	2 cut(s)	227, 519
Bsp143I	GATC	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	5 cut(s)	24, 54, 67, 99, 285
BspANI	GGCC	5 cut(s)	109, 184, 192, 410, 451
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	6 cut(s)	110, 151, 215, 259, 349, 368
BspT107I	GGYRCC	3 cut(s)	213, 257, 366
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	92, 185
BssAI	RCCGGY	1 cut(s)	626
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	162
BssNI	GRCGYC	1 cut(s)	367
BssSI	CACGAG	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	12, 304, 380
BstACI	GRCGYC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	104
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	42, 529
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	71, 369
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	491
BstPI	GGTNACC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstZI	CGGCCG	1 cut(s)	190
BsuRI	GGCC	5 cut(s)	109, 184, 192, 410, 451
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	42, 529
BtsI	GCAGTG	2 cut(s)	71, 573
BtsIMutI	CAGTG	3 cut(s)	8, 71, 573
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	2 cut(s)	71, 369
Cfr10I	RCCGGY	1 cut(s)	626
Cfr13I	GGNCC	2 cut(s)	108, 183
Csp6I	GTAC	4 cut(s)	175, 424, 547, 685
CspAI	ACCGGT	1 cut(s)	626
CviAII	CATG	2 cut(s)	105, 488
CviQI	GTAC	4 cut(s)	175, 424, 547, 685
DinI	GGCGCC	1 cut(s)	368
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DraI	TTTAAA	1 cut(s)	663
EaeI	YGGCCR	1 cut(s)	190
EagI	CGGCCG	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	274
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	190
Eco88I	CYCGRG	3 cut(s)	242, 288, 518
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	227
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	2 cut(s)	108, 491
FaiI	YATR	7 cut(s)	106, 128, 209, 419, 429, 489, 638
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	2 cut(s)	104, 487
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	54, 67
FokI	GGATG	2 cut(s)	29, 536
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	54, 67
GlaI	GCGC	2 cut(s)	70, 368
GluI	GCNGC	2 cut(s)	54, 67
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	5 cut(s)	109, 184, 192, 410, 451
HapII	CCGG	3 cut(s)	147, 193, 627
HhaI	GCGC	2 cut(s)	71, 369
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	2 cut(s)	108, 491
Hin6I	GCGC	2 cut(s)	69, 367
HinP1I	GCGC	2 cut(s)	69, 367
HinfI	GANTC	2 cut(s)	281, 675
HpaII	CCGG	3 cut(s)	147, 193, 627
HphI	GGTGA	2 cut(s)	223, 616
Hpy166II	GTNNAC	3 cut(s)	307, 376, 547
Hpy188I	TCNGA	1 cut(s)	329
Hpy8I	GTNNAC	3 cut(s)	307, 376, 547
Hpy99I	CGWCG	2 cut(s)	32, 347
HpyAV	CCTTC	3 cut(s)	274, 400, 639
HpyCH4III	ACNGT	3 cut(s)	12, 304, 380
HpyCH4IV	ACGT	3 cut(s)	309, 422, 435
HpyCH4V	TGCA	2 cut(s)	393, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpySE526I	ACGT	3 cut(s)	309, 422, 435
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	108, 491
HspAI	GCGC	2 cut(s)	69, 367
KasI	GGCGCC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	347
LweI	GCATC	1 cut(s)	514
MaeII	ACGT	3 cut(s)	309, 422, 435
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	227, 519
MluCI	AATT	2 cut(s)	116, 679
Mly113I	GGCGCC	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	352
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	160, 220
MspI	CCGG	3 cut(s)	147, 193, 627
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	584
NarI	GGCGCC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	108, 491
NlaIV	GGNNCC	6 cut(s)	110, 151, 215, 259, 349, 368
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	491
PaeR7I	CTCGAG	2 cut(s)	242, 518
PciI	ACATGT	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	675
PinAI	ACCGGT	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	55, 68
PleI	GAGTC	1 cut(s)	275
PluTI	GGCGCC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	275
PscI	ACATGT	1 cut(s)	487
PspEI	GGTNACC	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	220
PspN4I	GGNNCC	6 cut(s)	110, 151, 215, 259, 349, 368
PspPI	GGNCC	2 cut(s)	108, 183
PspXI	VCTCGAGB	2 cut(s)	242, 518
PvuII	CAGCTG	2 cut(s)	160, 220
RsaI	GTAC	4 cut(s)	176, 425, 548, 686
RsaNI	GTAC	4 cut(s)	175, 424, 547, 685
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	2 cut(s)	54, 67
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	2 cut(s)	108, 183
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	227, 519
SfaNI	GCATC	1 cut(s)	514
SfoI	GGCGCC	1 cut(s)	368
Sfr274I	CTCGAG	2 cut(s)	242, 518
SgrAI	CRCCGGYG	1 cut(s)	626
SlaI	CTCGAG	2 cut(s)	242, 518
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	242, 518
SmoI	CTYRAG	2 cut(s)	242, 518
Sse9I	AATT	2 cut(s)	116, 679
SsiI	CCGC	5 cut(s)	24, 54, 67, 99, 285
SspDI	GGCGCC	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	3 cut(s)	12, 304, 380
TaiI	ACGT	3 cut(s)	312, 425, 438
TaqI	TCGA	4 cut(s)	165, 243, 342, 519
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	116, 679
TatI	WGTACW	2 cut(s)	546, 684
TauI	GCSGC	2 cut(s)	56, 69
TfiI	GAWTC	1 cut(s)	675
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	3 cut(s)	15, 78, 580
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	152, 406, 653
TspGWI	ACGGA	2 cut(s)	360, 657
TspRI	CASTG	3 cut(s)	15, 78, 580
XceI	RCATGY	1 cut(s)	491
XhoI	CTCGAG	2 cut(s)	242, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.