Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Reverse (-)

72153669 .. 72154196

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTCTTCTTCCACAGCCAAAGTCAACACCTCCTTCATCGCAATTCTCATCCTCCTCACCTCTCCTCTCTCCTCCTCATCTCTACCACACGAACCAGACCCAGTACTGACCCCATGGCCCCACCAATTCCACTCTATTATGGTGATGAACTACAGCGGAACCCTCCAGGTAATCGACCTCTGGTACGACTGGCCCAACGGTCGAAACTTCAACATCGTACAGGTCCAGCTGGGTTCAATCCTCTACGACCTCGAATGGAGAAACGACACCTCCTTCTTCTACATCTTAGACTCTTCCAAAAGTTGTAACAGCGTTCAACTTGAAGTAGGTATTCTCCGCCCAAATTGGCTCGACGGAGCTCAGTATCTGGGTCAGCGCCACGTGGACCATATTTCAATTGCTTCCACTAAATTTGCAAAAGAAACCTCAATTAATGGAGAAATGATGATGAGTAGATGCACAATGCTCAGTAGCAGAAGACCCAGATCGATGATGACGAAGACCCAAAAGGGTCATTTCACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.93

Weight (kDa)

8.6

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	156, 337
AcsI	RAATTY	1 cut(s)	410
AcvI	CACGTG	1 cut(s)	382
AfaI	GTAC	3 cut(s)	105, 185, 219
AgsI	TTSAA	5 cut(s)	211, 237, 317, 323, 396
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	229, 359
AluI	AGCT	2 cut(s)	229, 359
Alw21I	GWGCWC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	2 cut(s)	116, 191
ApoI	RAATTY	1 cut(s)	410
AseI	ATTAAT	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	4 cut(s)	117, 192, 223, 385
AsuHPI	GGTGA	2 cut(s)	49, 154
AvaII	GGWCC	2 cut(s)	223, 385
BanII	GRGCYC	1 cut(s)	361
BbrPI	CACGTG	1 cut(s)	382
BbsI	GAAGAC	2 cut(s)	484, 506
Bbv12I	GWGCWC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	379
BmcAI	AGTACT	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	223, 385
BmgT120I	GGNCC	4 cut(s)	117, 192, 223, 385
BmiI	GGNNCC	2 cut(s)	119, 160
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	446
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	2 cut(s)	484, 506
BpmI	CTGGAG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse1I	ACTGG	2 cut(s)	101, 194
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	374, 481
BseNI	ACTGG	2 cut(s)	101, 194
BseRI	GAGGAG	4 cut(s)	44, 54, 61, 64
BseYI	CCCAGC	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	118, 193
BshVI	ATCGAT	1 cut(s)	488
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	118, 193
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	485
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	2 cut(s)	156, 337
BspANI	GGCC	2 cut(s)	118, 193
BspCNI	CTCAG	2 cut(s)	373, 480
BspDI	ATCGAT	1 cut(s)	488
BspLI	GGNNCC	2 cut(s)	119, 160
BsrI	ACTGG	2 cut(s)	101, 194
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	286, 360, 467
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	488
BstMBI	GATC	1 cut(s)	485
BstMCI	CGRYCG	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	2 cut(s)	484, 506
Bsu15I	ATCGAT	1 cut(s)	488
BsuRI	GGCC	2 cut(s)	118, 193
BsuTUI	ATCGAT	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	367
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	4 cut(s)	117, 192, 223, 385
ClaI	ATCGAT	1 cut(s)	488
Csp6I	GTAC	3 cut(s)	104, 184, 218
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	6 cut(s)	17, 118, 193, 229, 349, 359
CviKI_1	RGCY	6 cut(s)	17, 118, 193, 229, 349, 359
CviQI	GTAC	3 cut(s)	104, 184, 218
DdeI	CTNAG	3 cut(s)	286, 360, 467
DpnI	GATC	1 cut(s)	487
DpnII	GATC	1 cut(s)	485
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	223, 385
Eco53kI	GAGCTC	1 cut(s)	359
Eco72I	CACGTG	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	117
FaiI	YATR	3 cut(s)	115, 140, 390
FatI	CATG	1 cut(s)	113
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	361
GlaI	GCGC	1 cut(s)	377
GsaI	CCCAGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	118, 193
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	290
HphI	GGTGA	2 cut(s)	49, 154
Hpy166II	GTNNAC	2 cut(s)	25, 385
Hpy8I	GTNNAC	2 cut(s)	25, 385
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	43, 283
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	416, 459
HpyF3I	CTNAG	3 cut(s)	286, 360, 467
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	117
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	485
LmnI	GCTCC	1 cut(s)	356
LweI	GCATC	1 cut(s)	446
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	487
MboI	GATC	1 cut(s)	485
MboII	GAAGA	4 cut(s)	268, 285, 489, 511
MfeI	CAATTG	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	6 cut(s)	42, 125, 343, 396, 410, 429
MlyI	GAGTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	432
MspA1I	CMGCKG	2 cut(s)	156, 229
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	485
NlaIII	CATG	1 cut(s)	117
NlaIV	GGNNCC	2 cut(s)	119, 160
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PleI	GAGTC	1 cut(s)	284
PmaCI	CACGTG	1 cut(s)	382
PmlI	CACGTG	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	119, 160
PspPI	GGNCC	4 cut(s)	117, 192, 223, 385
PstNI	CAGNNNCTG	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	105, 185, 219
RsaNI	GTAC	3 cut(s)	104, 184, 218
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	485
Sau96I	GGNCC	4 cut(s)	117, 192, 223, 385
ScaI	AGTACT	1 cut(s)	105
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	446
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	223, 385
Sse9I	AATT	6 cut(s)	42, 125, 343, 396, 410, 429
SsiI	CCGC	2 cut(s)	156, 337
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	5 cut(s)	174, 202, 252, 351, 488
TasI	AATT	6 cut(s)	42, 125, 343, 396, 410, 429
TatI	WGTACW	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TspDTI	ATGAA	2 cut(s)	25, 161
TspGWI	ACGGA	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	223, 385
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.