Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Reverse (-)

5591113 .. 5592816

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCTTTGCAGCAACCACACCTATCTCCTTGTGTTTCCTCCTCTTGGTTATCTCCTCCTTCAACATCTCAACTTCCGATGACCCGACTCCGGCGACATGGCCCCACCAATTCCACTCAGTTCTTTTCATGAACAACAGCGGAGCTCTCCAAATGTTGGACCTGTGGTACGACTGGCCCAACGGTCGGAACTTCAACATAATCCAGAACCAACTAGGAAAGCTCAAGTACGACTTGGAGTGGGACAACGGAACCTCCTTCATCTACACTTTGGACTCCGACCGGGAATGCAGGGTCTTGCATTTTGAGGTGGGCATTCTCCGGCCTAACTGGCTTGAAGGTGCAACTTATCTGGGTCAGCGCCATGTGGATGGCTTCCTCTGCAATGTTTGGGAGAAGGTTGACTTCATTTGGTACTATGAGGATGTTGTTACTAAGAGACCTGTTCACTGGCTCTTCTACACAGGGATGAGTGCTCATGTGATGACATTTGAGGTGGGAGCACAACTTGAGGACAAAGAGTGGAATGCTCCTGTTTACTGTTTTGGGGAGGCTGTTAAGTTGGAAAGGAAAAAGAGCTCCCTGACTGAAGCTACGGCAAGTGATTATTCTCATGGGAGGCTAGTGAGAAGAGTATTGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.89

Weight (kDa)

5.3

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AciI	CCGC	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	3 cut(s)	170, 230, 416
AfiI	CCNNNNNNNGG	4 cut(s)	46, 91, 157, 186
AgsI	TTSAA	3 cut(s)	64, 196, 338
AluBI	AGCT	4 cut(s)	146, 223, 579, 593
AluI	AGCT	4 cut(s)	146, 223, 579, 593
Alw21I	GWGCWC	4 cut(s)	148, 478, 505, 581
Alw26I	GTCTC	1 cut(s)	433
AoxI	GGCC	4 cut(s)	3, 101, 176, 323
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	102, 160, 177
AsuC2I	CCSGG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	160
BanII	GRGCYC	2 cut(s)	148, 581
Bbv12I	GWGCWC	4 cut(s)	148, 478, 505, 581
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	2 cut(s)	215, 623
BfoI	RGCGCY	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	102, 160, 177
BmiI	GGNNCC	2 cut(s)	104, 253
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	631
BpuEI	CTTGAG	2 cut(s)	209, 530
BpuMI	CCSGG	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 91, 157, 186
Bse1I	ACTGG	3 cut(s)	179, 335, 455
Bse3DI	GCAATG	1 cut(s)	391
BseGI	GGATG	4 cut(s)	376, 430, 474, 646
BseLI	CCNNNNNNNGG	4 cut(s)	46, 91, 157, 186
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	179, 335, 455
BseRI	GAGGAG	2 cut(s)	32, 46
BseXI	GCAGC	1 cut(s)	23
Bsh1285I	CGRYCG	2 cut(s)	187, 283
BshFI	GGCC	4 cut(s)	5, 103, 178, 325
BsiEI	CGRYCG	2 cut(s)	187, 283
BsiHKAI	GWGCWC	4 cut(s)	148, 478, 505, 581
BsiSI	CCGG	3 cut(s)	92, 283, 322
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	4 cut(s)	46, 91, 157, 186
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	3 cut(s)	293, 315, 532
BsnI	GGCC	4 cut(s)	5, 103, 178, 325
Bso31I	GGTCTC	1 cut(s)	433
Bsp1286I	GDGCHC	4 cut(s)	148, 478, 505, 581
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	4 cut(s)	5, 103, 178, 325
BspCNI	CTCAG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	104, 253
BspQI	GCTCTTC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	3 cut(s)	179, 335, 455
Bst4CI	ACNGT	2 cut(s)	185, 542
Bst6I	CTCTTC	2 cut(s)	461, 625
BstDEI	CTNAG	2 cut(s)	118, 435
BstF5I	GGATG	4 cut(s)	376, 430, 474, 646
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	363
BstMAI	GTCTC	1 cut(s)	433
BstMCI	CGRYCG	2 cut(s)	187, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 331, 381
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	5, 103, 178, 325
BtsCI	GGATG	4 cut(s)	376, 430, 474, 646
BtsIMutI	CAGTG	1 cut(s)	448
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	102, 160, 177
Csp6I	GTAC	3 cut(s)	169, 229, 415
CviAII	CATG	5 cut(s)	99, 130, 365, 479, 614
CviQI	GTAC	3 cut(s)	169, 229, 415
DdeI	CTNAG	2 cut(s)	118, 435
Eam1104I	CTCTTC	2 cut(s)	461, 625
EarI	CTCTTC	2 cut(s)	461, 625
Ecl136II	GAGCTC	2 cut(s)	146, 579
Eco24I	GRGCYC	2 cut(s)	148, 581
Eco31I	GGTCTC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	2 cut(s)	146, 579
Eco57I	CTGAAG	1 cut(s)	609
EcoICRI	GAGCTC	2 cut(s)	146, 579
EcoT38I	GRGCYC	2 cut(s)	148, 581
FaeI	CATG	5 cut(s)	102, 133, 368, 482, 617
FaiI	YATR	7 cut(s)	100, 131, 200, 366, 420, 480, 615
FalI	AAGNNNNNCTT	4 cut(s)	218, 250, 389, 421
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	5 cut(s)	98, 129, 364, 478, 613
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	3 cut(s)	383, 437, 481
FriOI	GRGCYC	2 cut(s)	148, 581
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	215, 623
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	4 cut(s)	5, 103, 178, 325
HapII	CCGG	3 cut(s)	92, 283, 322
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	102, 133, 368, 482, 617
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	88, 275
HpaII	CCGG	3 cut(s)	92, 283, 322
Hpy166II	GTNNAC	3 cut(s)	403, 448, 538
Hpy188I	TCNGA	3 cut(s)	79, 189, 280
Hpy188III	TCNNGA	2 cut(s)	130, 205
Hpy8I	GTNNAC	3 cut(s)	403, 448, 538
HpyAV	CCTTC	4 cut(s)	70, 268, 332, 391
HpyCH4III	ACNGT	2 cut(s)	185, 542
HpyCH4V	TGCA	5 cut(s)	11, 291, 301, 344, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 331, 381
HpyF3I	CTNAG	2 cut(s)	118, 435
Hsp92II	CATG	5 cut(s)	102, 133, 368, 482, 617
HspAI	GCGC	1 cut(s)	361
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	4 cut(s)	143, 500, 535, 584
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	2 cut(s)	215, 623
MaeIII	GTNAC	1 cut(s)	430
MboII	GAAGA	2 cut(s)	448, 642
MhlI	GDGCHC	4 cut(s)	148, 478, 505, 581
MluCI	AATT	1 cut(s)	110
MlyI	GAGTC	2 cut(s)	82, 269
MmeI	TCCRAC	4 cut(s)	138, 167, 303, 543
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	369, 467
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	3 cut(s)	92, 283, 322
MspR9I	CCNGG	1 cut(s)	284
Mva1269I	GAATGC	3 cut(s)	293, 315, 532
MwoI	GCNNNNNNNGC	3 cut(s)	11, 331, 381
NciI	CCSGG	1 cut(s)	284
NlaIII	CATG	5 cut(s)	102, 133, 368, 482, 617
NlaIV	GGNNCC	2 cut(s)	104, 253
PagI	TCATGA	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	461
PctI	GAATGC	3 cut(s)	293, 315, 532
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	82, 269
PpsI	GAGTC	2 cut(s)	82, 269
Psp124BI	GAGCTC	2 cut(s)	148, 581
PspN4I	GGNNCC	2 cut(s)	104, 253
PspPI	GGNCC	3 cut(s)	102, 160, 177
RsaI	GTAC	3 cut(s)	170, 230, 416
RsaNI	GTAC	3 cut(s)	169, 229, 415
RseI	CAYNNNNRTG	2 cut(s)	369, 467
SacI	GAGCTC	2 cut(s)	148, 581
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	1 cut(s)	12
Sau96I	GGNCC	3 cut(s)	102, 160, 177
SchI	GAGTC	2 cut(s)	82, 269
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	4 cut(s)	148, 478, 505, 581
SfaNI	GCATC	1 cut(s)	631
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	369, 467
SmlI	CTYRAG	2 cut(s)	224, 509
SmoI	CTYRAG	2 cut(s)	224, 509
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	2 cut(s)	215, 623
SstI	GAGCTC	2 cut(s)	148, 581
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	185, 542
TasI	AATT	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	455
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	4 cut(s)	118, 146, 250, 397
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	455
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	160
XspI	CTAG	2 cut(s)	215, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.