Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

41603352 .. 41627646

Gene Structure 24295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAACTACAACGAAACCCTCCAGATAATCGACCTCTGGTACGACTGGCCCAATGGTCGAAACTTCAACATCGTACAGGACCAGCTGGGTTCAATCCTCTACGACCTCGAATGGAACAACGACACCTCCTTCTACAGCTTAGACTCTTCCAAAAGCTGCAGCAGCGTTCAATTTGAAGTAGAAAGCTCTCAGCAAAACACTGGTCCTGGGACCTTCAAGCTTGGGGAAGATCCTGCACCACCACCACCACCTAAGGGGGATGGTAAAGTCCATGGAGAAGCACCAAGAAGGAACCAGCGAGAAGATGGTAAATCAATTTTTGTTTATTGCAGGCTATGGCTTGTGAAGTCACCAACAAGAATTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

14.07

Weight (kDa)

4.83

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	360
AfaI	GTAC	2 cut(s)	41, 75
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	67, 93, 170, 176, 217
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	5 cut(s)	85, 138, 156, 186, 220
AluI	AGCT	5 cut(s)	85, 138, 156, 186, 220
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	156, 159, 162
ApoI	RAATTY	1 cut(s)	360
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AspS9I	GGNCC	4 cut(s)	48, 79, 203, 210
AsuHPI	GGTGA	1 cut(s)	342
AvaII	GGWCC	3 cut(s)	79, 203, 210
AxyI	CCTNAGG	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	143, 171, 174
BccI	CCATC	2 cut(s)	254, 299
BciT130I	CCWGG	1 cut(s)	207
BfmI	CTRYAG	2 cut(s)	133, 157
BisI	GCNGC	3 cut(s)	157, 160, 163
BlsI	GCNGC	3 cut(s)	158, 161, 164
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	3 cut(s)	79, 203, 210
BmgT120I	GGNCC	4 cut(s)	48, 79, 203, 210
BmiI	GGNNCC	2 cut(s)	211, 293
BmrFI	CCNGG	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	206, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	50, 205
Bse21I	CCTNAGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	206, 271
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	50, 205
BseXI	GCAGC	3 cut(s)	143, 171, 174
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	229
Bsp19I	CCATGG	1 cut(s)	271
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	211, 293
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	50, 205
BssECI	CCNNGG	2 cut(s)	206, 271
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	139, 189, 252
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	2 cut(s)	133, 157
BstV1I	GCAGC	3 cut(s)	143, 171, 174
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	332
Cfr13I	GGNCC	4 cut(s)	48, 79, 203, 210
Csp6I	GTAC	2 cut(s)	40, 74
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	8 cut(s)	49, 85, 138, 156, 186, 220, 334, 340
CviKI_1	RGCY	8 cut(s)	49, 85, 138, 156, 186, 220, 334, 340
CviQI	GTAC	2 cut(s)	40, 74
DdeI	CTNAG	3 cut(s)	139, 189, 252
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	3 cut(s)	79, 203, 210
Eco81I	CCTNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	275
FaiI	YATR	2 cut(s)	273, 337
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	157, 160, 163
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	157, 160, 163
GluI	GCNGC	3 cut(s)	157, 160, 163
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	1 cut(s)	342
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	139, 223, 282
HpyCH4V	TGCA	3 cut(s)	159, 236, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	3 cut(s)	139, 189, 252
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	229
Lsp1109I	GCAGC	3 cut(s)	143, 171, 174
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	3 cut(s)	138, 239, 314
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	3 cut(s)	170, 315, 360
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	29, 44, 107, 116, 136
MspA1I	CMGCKG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	2 cut(s)	211, 293
NmuCI	GTSAC	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	158, 161, 164
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	211, 293
PspPI	GGNCC	4 cut(s)	48, 79, 203, 210
PspPPI	RGGWCCY	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	41, 75
RsaNI	GTAC	2 cut(s)	40, 74
SatI	GCNGC	3 cut(s)	157, 160, 163
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	4 cut(s)	48, 79, 203, 210
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	207
SfcI	CTRYAG	2 cut(s)	133, 157
SinI	GGWCC	3 cut(s)	79, 203, 210
Sse9I	AATT	3 cut(s)	170, 315, 360
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	271
TaqI	TCGA	3 cut(s)	30, 58, 108
TasI	AATT	3 cut(s)	170, 315, 360
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	3 cut(s)	156, 159, 162
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	3 cut(s)	79, 203, 210
XapI	RAATTY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.