Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Reverse (-)

8562745 .. 8564717

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTCTTAAAACCAATCCATTCCTTCATCGTTATCCTCCTCCTCGTTCTCTCCGTCGGTGACAAAATATCCGCCGGTACTGAGCCGGAGAAGGAGCCAGTTCCTGCGGTATGGCCGGAGCAGTTCCACGCGTTGATGTTGATGAACAAATCAGGGTCATTGGAGATTGTGGATCTTTGGTATGACTGGGTCAATGGACGTAACTTTAACATCATTCAGAAGCAGCTTGGTAAGCTCACTTATGACCTCGAATGGAACAATGGCACTTCTTTCTACTACACTCTTGACGCTTCTAAAACTTGTCGCACCGTTCATTTCGAGGTTGGAATCTTGAGACCAAATTGGCTAGATGGAGCAAAGTATATGGGTCAACGACATGTAAATGGGTTTTTATGCAACGTATGGGAAAAAGTTGAGTTCTTATGGTACTATGAAGATGTTGTCACCAAGAGACCTGTACAGTGGATCTTCTATACAGGTAGAGAAGCTCATGTGATGACATTTGAAGTTGGAGCTGTCCTAGAAGACGAGAAATGGCAGGCTCCTGTATATTGTTTCCACAATGAGAAGAAAGAAGTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

22.74

Weight (kDa)

5.69

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	72, 107
AclWI	GGATC	2 cut(s)	180, 473
AcoI	YGGCCR	1 cut(s)	113
AfaI	GTAC	4 cut(s)	79, 428, 459, 579
AflIII	ACRYGT	2 cut(s)	129, 376
AgsI	TTSAA	1 cut(s)	506
AluBI	AGCT	4 cut(s)	226, 235, 488, 515
AluI	AGCT	4 cut(s)	226, 235, 488, 515
Alw26I	GTCTC	2 cut(s)	328, 445
AlwI	GGATC	2 cut(s)	180, 473
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	71, 436
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	328, 445
BfaI	CTAG	2 cut(s)	347, 521
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	96, 543
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	352
BsaI	GGTCTC	2 cut(s)	328, 445
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	98, 191
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	98, 191
BseRI	GAGGAG	2 cut(s)	29, 32
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	115
BsiSI	CCGG	3 cut(s)	75, 86, 116
BsmAI	GTCTC	2 cut(s)	328, 445
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	2 cut(s)	328, 445
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	172, 465
BspACI	CCGC	2 cut(s)	72, 107
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	96, 543
BspPI	GGATC	2 cut(s)	180, 473
BspTNI	GGTCTC	2 cut(s)	328, 445
BsrFI	RCCGGY	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	98, 191
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	2 cut(s)	172, 465
Bst4CI	ACNGT	2 cut(s)	310, 462
BstAUI	TGTACA	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	175, 468
BstMAI	GTCTC	2 cut(s)	328, 445
BstMBI	GATC	2 cut(s)	172, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	380
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	2 cut(s)	172, 465
BstYI	RGATCY	2 cut(s)	172, 465
BsuRI	GGCC	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	540
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	74
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	4 cut(s)	78, 427, 458, 578
CviAII	CATG	2 cut(s)	377, 491
CviJI	RGCY	9 cut(s)	85, 97, 115, 226, 235, 346, 488, 515, 542
CviKI_1	RGCY	9 cut(s)	85, 97, 115, 226, 235, 346, 488, 515, 542
CviQI	GTAC	4 cut(s)	78, 427, 458, 578
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	174, 467
DpnII	GATC	2 cut(s)	172, 465
EaeI	YGGCCR	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	61
Eco31I	GGTCTC	2 cut(s)	328, 445
FaeI	CATG	2 cut(s)	380, 494
FatI	CATG	2 cut(s)	376, 490
Fnu4HI	GCNGC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	347, 521
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	3 cut(s)	75, 86, 116
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	380, 494
HincII	GTYRAC	1 cut(s)	371
HindII	GTYRAC	1 cut(s)	371
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	3 cut(s)	75, 86, 116
HphI	GGTGA	2 cut(s)	71, 436
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	284, 331
Hpy8I	GTNNAC	1 cut(s)	371
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	34, 85
HpyCH4III	ACNGT	2 cut(s)	310, 462
HpyCH4IV	ACGT	2 cut(s)	199, 399
HpyCH4V	TGCA	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	199, 399
Hsp92II	CATG	2 cut(s)	380, 494
Kzo9I	GATC	2 cut(s)	172, 465
LmnI	GCTCC	5 cut(s)	94, 118, 353, 512, 547
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	347, 521
MaeII	ACGT	2 cut(s)	199, 399
MaeIII	GTNAC	3 cut(s)	59, 200, 442
MalI	GATC	2 cut(s)	174, 467
MboI	GATC	2 cut(s)	172, 465
MboII	GAAGA	4 cut(s)	446, 460, 536, 580
MflI	RGATCY	2 cut(s)	172, 465
MluCI	AATT	1 cut(s)	340
MluI	ACGCGT	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	304, 490
MnlI	CCTC	5 cut(s)	47, 50, 53, 257, 313
MseI	TTAA	2 cut(s)	8, 207
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	3 cut(s)	75, 86, 116
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	232
NdeII	GATC	2 cut(s)	172, 465
NlaIII	CATG	2 cut(s)	380, 494
NlaIV	GGNNCC	2 cut(s)	96, 543
NmuCI	GTSAC	2 cut(s)	59, 442
NspI	RCATGY	1 cut(s)	380
PciI	ACATGT	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	225
PscI	ACATGT	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	96, 543
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	172, 465
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	4 cut(s)	79, 428, 459, 579
RsaNI	GTAC	4 cut(s)	78, 427, 458, 578
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	8, 207
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	172, 465
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	72, 107
SspMI	CTAG	2 cut(s)	347, 521
TaaI	ACNGT	2 cut(s)	310, 462
TaiI	ACGT	2 cut(s)	202, 402
TaqI	TCGA	2 cut(s)	249, 318
TasI	AATT	1 cut(s)	340
TatI	WGTACW	2 cut(s)	457, 577
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	2 cut(s)	8, 207
Tru9I	TTAA	2 cut(s)	8, 207
TscAI	CASTG	1 cut(s)	467
TseFI	GTSAC	2 cut(s)	59, 442
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	2 cut(s)	59, 442
TspDTI	ATGAA	4 cut(s)	16, 158, 302, 447
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	467
Tth111I	GACNNNGTC	1 cut(s)	188
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	2 cut(s)	347, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.