Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001918

Physical Location & Seq

Genomic Coordinates Forward (+)

13089215 .. 13090399

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G140200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAACCCAAGAGAAGCATCATCAACAATGGCCTCTGCAACTCTACCCAAGTCCCCGTCTTTCCTCTTCTTCCTCCTCCTCCTCCTTGTGATGCGCCTCAATTTCCCATTGATGTCGAAGACATTGGTAGAATCAGCCTCTGATGACCCAGCTCCAGCAGCATGGCCCCACCAATTCCACTCTGTGCTTTTCATGAACAACAGCAAGGGAGCTCTGCAAATTGTGGACCTCTGGTACGACTGGCCCAACGGCCGAAACTTCAACATAATCCAGAGCCAGCTGGGGAAGCTAACCTACGACCTGGAGTGGGACAATGGCACCTCCTTCATCTACACCTTGGACGCCAACAGAGAATGCAAGACCCTGCATTTCCCTGTTGGCATTCTCCGGCCCAATTGGCTTGATGGTGCTACTTATCTGGGTCAGCGCCACGTGGATGGTTTCCTGTGTAATGTGTGGGAAAAGGTTGACTTCATCTGGTACTATGAAGATGTCCTCACTAGGAGACCCGTCCACTGGGTCTTCTACACAGGGTTTAATGCTCATGTGATGACATTTGAGGTGGGAGCTGTGCTTGGGGATGCCAAGTGGGAGGCTCCTGTTTACTGTTTTGGGGAGGAGGCTGAGGCAGAAAGGAGCAGGAGCAGGAGCTCTGTGCTTGAATATATGACAAGTCATCATTCTCATGGGAGTTCGATGAGAGCTGGTTTTCGTGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

27.5

Weight (kDa)

5.97

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23760 AT4G14100
fragaria_vesca	FvH4_4g22500 FvH4_5g09720
malus_domestica	MD06G1128900.v1.1 MD13G1132000.v1.1 MD16G1142300.v1.1
prunus_persica	Prupe.1G213400_v2.0.a1 Prupe.5G140200_v2.0.a1
pyrus_communis	pycom06g12060 pycom16g11280
rosa_chinensis	RchiOBHm_Chr4g0428721 RchiOBHm_Chr4g0428731 RchiOBHm_Chr5g0066081 RchiOBHm_Chr7g0188511
rosa_laevigata	RLG00000002745 RLG00000004688 RLG00000007131 RLG00000007132
rosa_multiflora	Rmu_co8421357.1_g000001 Rmu_co8470925.1_g000001 Rmu_sc0001576.1_g000008 Rmu_sc0001847.1_g000001 Rmu_sc0001847.1_g000003 Rmu_sc0016427.1_g000006
rosa_roxburghii	Rroxscaffold_3G00266350 Rroxscaffold_4G00305790 Rroxscaffold_5G00370380 Rroxscaffold_5G00370390
rosa_rugosa	Rorug04G0227700 Rorug04G0227700 Rorug06G0491000
rosa_samantha	Rh1AG218900 Rh4AG285000 Rh4AG285100 Rh4BG291000 Rh4BG291100 Rh4CG306900 Rh4CG307000 Rh4DG288300 Rh7AG095700 Rh7BG097500 Rh7CG098300 Rh7DG097600
rosa_wichuraiana	Rw4G024730 Rw7G008270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	342
AdeI	CACNNNGTG	1 cut(s)	184
AfaI	GTAC	2 cut(s)	236, 482
AfiI	CCNNNNNNNGG	2 cut(s)	307, 516
AgsI	TTSAA	2 cut(s)	262, 662
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	7 cut(s)	152, 212, 280, 289, 569, 651, 704
AluI	AGCT	7 cut(s)	152, 212, 280, 289, 569, 651, 704
Alw21I	GWGCWC	2 cut(s)	214, 653
Alw26I	GTCTC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	5 cut(s)	30, 164, 242, 250, 389
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	96, 429
AspS9I	GGNCC	4 cut(s)	165, 226, 243, 390
AvaII	GGWCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	214, 653
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbrPI	CACGTG	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	125, 514
Bbv12I	GWGCWC	2 cut(s)	214, 653
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	2 cut(s)	398, 431
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	430
BglI	GCCNNNNNGGC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	4 cut(s)	165, 226, 243, 390
BmiI	GGNNCC	3 cut(s)	167, 319, 597
BmrFI	CCNGG	1 cut(s)	302
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	3 cut(s)	26, 81, 571
BmuI	ACTGGG	1 cut(s)	526
BpiI	GAAGAC	2 cut(s)	125, 514
BpmI	CTGGAG	2 cut(s)	138, 323
Bpu10I	CCTNAGC	1 cut(s)	624
BsaAI	YACGTR	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 516
Bse1I	ACTGG	2 cut(s)	245, 521
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	442, 586
BseLI	CCNNNNNNNGG	2 cut(s)	307, 516
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	2 cut(s)	245, 521
BseRI	GAGGAG	4 cut(s)	65, 68, 71, 632
BseX3I	CGGCCG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	170
BseYI	CCCAGC	2 cut(s)	148, 280
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	5 cut(s)	32, 166, 244, 252, 391
BshNI	GGYRCC	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	214, 653
BsiSI	CCGG	1 cut(s)	388
BslFI	GGGAC	2 cut(s)	37, 323
BslI	CCNNNNNNNGG	2 cut(s)	307, 516
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	2 cut(s)	37, 323
BsmI	GAATGC	2 cut(s)	359, 381
BsnI	GGCC	5 cut(s)	32, 166, 244, 252, 391
Bso31I	GGTCTC	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	214, 653
BspANI	GGCC	5 cut(s)	32, 166, 244, 252, 391
BspCNI	CTCAG	1 cut(s)	616
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	167, 319, 597
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	245, 521
BssECI	CCNNGG	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	624
BstF5I	GGATG	2 cut(s)	442, 586
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	2 cut(s)	96, 429
BstMAI	GTCTC	1 cut(s)	499
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 286, 397
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	170
BstV2I	GAAGAC	2 cut(s)	125, 514
BstXI	CCANNNNNNTGG	2 cut(s)	162, 437
BstZI	CGGCCG	1 cut(s)	250
BsuRI	GGCC	5 cut(s)	32, 166, 244, 252, 391
BtsCI	GGATG	2 cut(s)	442, 586
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	278
CaiI	CAGNNNCTG	1 cut(s)	140
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	2 cut(s)	96, 429
Cfr13I	GGNCC	4 cut(s)	165, 226, 243, 390
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	235, 481
CviAII	CATG	4 cut(s)	162, 193, 545, 686
CviQI	GTAC	2 cut(s)	235, 481
DdeI	CTNAG	1 cut(s)	624
DraIII	CACNNNGTG	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	250
EagI	CGGCCG	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Ecl136II	GAGCTC	2 cut(s)	212, 651
EclXI	CGGCCG	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	2 cut(s)	214, 653
Eco31I	GGTCTC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	226
Eco52I	CGGCCG	1 cut(s)	250
Eco53kI	GAGCTC	2 cut(s)	212, 651
Eco72I	CACGTG	1 cut(s)	433
EcoICRI	GAGCTC	2 cut(s)	212, 651
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	2 cut(s)	214, 653
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	4 cut(s)	165, 196, 548, 689
FaiI	YATR	8 cut(s)	163, 194, 266, 486, 546, 666, 668, 687
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	2 cut(s)	37, 323
FatI	CATG	4 cut(s)	161, 192, 544, 685
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	2 cut(s)	449, 593
FriOI	GRGCYC	2 cut(s)	214, 653
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	2 cut(s)	95, 428
GluI	GCNGC	1 cut(s)	159
GsaI	CCCAGC	2 cut(s)	152, 284
GsuI	CTGGAG	2 cut(s)	138, 323
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	5 cut(s)	32, 166, 244, 252, 391
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	2 cut(s)	96, 429
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	4 cut(s)	165, 196, 548, 689
Hin6I	GCGC	2 cut(s)	94, 427
HinP1I	GCGC	2 cut(s)	94, 427
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	388
Hpy166II	GTNNAC	4 cut(s)	226, 469, 514, 604
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	193, 271
Hpy8I	GTNNAC	4 cut(s)	226, 469, 514, 604
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	5 cut(s)	38, 217, 357, 367, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 286, 397
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	165, 196, 548, 689
HspAI	GCGC	2 cut(s)	94, 427
LmnI	GCTCC	7 cut(s)	157, 209, 566, 601, 636, 642, 648
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	3 cut(s)	26, 81, 571
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	1 cut(s)	432
MboII	GAAGA	5 cut(s)	58, 61, 130, 500, 514
MfeI	CAATTG	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	214, 653
MluCI	AATT	4 cut(s)	100, 173, 219, 394
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	2 cut(s)	435, 684
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	2 cut(s)	359, 381
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	158, 286, 397
NlaIII	CATG	4 cut(s)	165, 196, 548, 689
NlaIV	GGNNCC	3 cut(s)	167, 319, 597
PagI	TCATGA	1 cut(s)	192
PctI	GAATGC	2 cut(s)	359, 381
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	160
PmaCI	CACGTG	1 cut(s)	433
PmlI	CACGTG	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	433
Psp124BI	GAGCTC	2 cut(s)	214, 653
Psp6I	CCWGG	1 cut(s)	300
PspCI	CACGTG	1 cut(s)	433
PspFI	CCCAGC	2 cut(s)	148, 280
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	167, 319, 597
PspPI	GGNCC	4 cut(s)	165, 226, 243, 390
PstNI	CAGNNNCTG	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	236, 482
RsaNI	GTAC	2 cut(s)	235, 481
RseI	CAYNNNNRTG	2 cut(s)	435, 684
SacI	GAGCTC	2 cut(s)	214, 653
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	1 cut(s)	159
Sau96I	GGNCC	4 cut(s)	165, 226, 243, 390
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	2 cut(s)	214, 653
SfaNI	GCATC	3 cut(s)	26, 81, 571
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	435, 684
Sse9I	AATT	4 cut(s)	100, 173, 219, 394
SspMI	CTAG	1 cut(s)	501
SstI	GAGCTC	2 cut(s)	214, 653
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	116, 695
TasI	AATT	4 cut(s)	100, 173, 219, 394
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	521
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	6 cut(s)	17, 181, 209, 316, 463, 501
TspRI	CASTG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	226
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.